AT1G48200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016081
Physical Location & Seq
Reverse (-)
17796764 .. 17798337
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48200.1

Sequence Viewer

Length: 357 bp
ATGGCGAACAAGATTGCAATGTTTCTCTCGGAAGCAATGAACAACAATGCTGTGATAAACACGTGTCTAGGAGTATCGTTTGTGGTTTTGGGATTGAGATCTGATAAACAGCAGAAGTATGTTGAGGCCTTAGCAGAGCAGAAGGAGTCACTCTTCAAGTCTAATAAGGCAATGAAACTCACCATGTGGGAGTGGAAACAGCAGCTCTTTGCTGAAGCTGCCTCTGCGGGTAATGCCGCGGTTGTTCCTTTGTCGACGCTTAAGGCCATCTATGGTGAAGTTACCACCACAACCAATCAATCTGGTGACACAGCCAAGGAAGATTCTAAAGTGTCCACTCCCAAGATCATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.87

Weight (kDa)

8.71

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48200
fragaria_vesca FvH4_2g26810
malus_domestica MD08G1164500.v1.1
prunus_persica Prupe.1G499600_v2.0.a1
pyrus_communis pycom08g14170 pycom12654g00010
rosa_chinensis RchiOBHm_Chr6g0295671
rosa_laevigata RLG00000011777
rosa_multiflora Rmu_sc0018344.1_g000001
rosa_roxburghii Rroxscaffold_7G00172240
rosa_rugosa Rorug06G0253300
rosa_samantha Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana Rw6G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 254
AccII CGCG 1 cut(s) 239
AciI CCGC 3 cut(s) 227, 237, 239
AcuI CTGAAG 1 cut(s) 234
AcvI CACGTG 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 186
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 2 cut(s) 60, 62
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 205, 218
AluI AGCT 2 cut(s) 205, 218
AoxI GGCC 2 cut(s) 126, 264
ApeKI GCWGC 2 cut(s) 202, 218
AsuHPI GGTGA 3 cut(s) 172, 287, 317
BbrPI CACGTG 1 cut(s) 63
BbvI GCAGC 2 cut(s) 205, 214
BccI CCATC 1 cut(s) 275
BfaI CTAG 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 98
BisI GCNGC 3 cut(s) 203, 219, 237
BlsI GCNGC 3 cut(s) 204, 220, 238
Bpu10I CCTNAGC 1 cut(s) 130
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 237, 315
Bse3DI GCAATG 3 cut(s) 24, 42, 177
Bse8I GATNNNNATC 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 237, 315
BseJI GATNNNNATC 1 cut(s) 97
BseMI GCAATG 3 cut(s) 24, 42, 177
BseXI GCAGC 2 cut(s) 205, 214
Bsh1236I CGCG 1 cut(s) 239
BshFI GGCC 2 cut(s) 128, 266
BsnI GGCC 2 cut(s) 128, 266
Bsp143I GATC 2 cut(s) 98, 345
BspACI CCGC 3 cut(s) 227, 237, 239
BspANI GGCC 2 cut(s) 128, 266
BspFNI CGCG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 3 cut(s) 24, 42, 177
BssECI CCNNGG 2 cut(s) 237, 315
BssMI GATC 2 cut(s) 98, 345
BssT1I CCWWGG 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 158
BstAFI CTTAAG 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 130
BstDSI CCRYGG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 239
BstKTI GATC 2 cut(s) 101, 348
BstMBI GATC 2 cut(s) 98, 345
BstMWI GCNNNNNNNGC 3 cut(s) 218, 224, 233
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 205, 214
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuRI GGCC 2 cut(s) 128, 266
BtgI CCRYGG 1 cut(s) 237
CciI TCATGA 1 cut(s) 348
Cfr42I CCGCGG 1 cut(s) 240
CseI GACGC 1 cut(s) 265
CviAII CATG 2 cut(s) 184, 349
CviJI RGCY 5 cut(s) 128, 205, 218, 266, 314
CviKI_1 RGCY 5 cut(s) 128, 205, 218, 266, 314
DdeI CTNAG 1 cut(s) 130
DpnI GATC 2 cut(s) 100, 347
DpnII GATC 2 cut(s) 98, 345
DraIII CACNNNGTG 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 2 cut(s) 187, 352
FaiI YATR 5 cut(s) 120, 185, 273, 350, 355
FatI CATG 2 cut(s) 183, 348
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 3 cut(s) 203, 219, 237
Fsp4HI GCNGC 3 cut(s) 203, 219, 237
FspBI CTAG 1 cut(s) 68
GluI GCNGC 3 cut(s) 203, 219, 237
HaeIII GGCC 2 cut(s) 128, 266
HgaI GACGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 187, 352
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 2 cut(s) 146, 323
HphI GGTGA 3 cut(s) 172, 287, 317
Hpy166II GTNNAC 2 cut(s) 255, 336
Hpy188I TCNGA 2 cut(s) 31, 103
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 2 cut(s) 255, 336
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 224, 233
HpyF3I CTNAG 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 2 cut(s) 187, 352
KspI CCGCGG 1 cut(s) 240
Kzo9I GATC 2 cut(s) 98, 345
LpnPI CCDG 1 cut(s) 288
Lsp1109I GCAGC 2 cut(s) 205, 214
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 3 cut(s) 147, 280, 305
MalI GATC 2 cut(s) 100, 347
MboI GATC 2 cut(s) 98, 345
MboII GAAGA 2 cut(s) 145, 332
MflI RGATCY 1 cut(s) 98
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 2 cut(s) 118, 232
MseI TTAA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 260
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 218, 224, 233
NdeII GATC 2 cut(s) 98, 345
NlaIII CATG 2 cut(s) 187, 352
NmuCI GTSAC 2 cut(s) 147, 305
PagI TCATGA 1 cut(s) 348
PceI AGGCCT 1 cut(s) 128
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 3 cut(s) 204, 220, 238
PleI GAGTC 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
PpsI GAGTC 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 63
PspCI CACGTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 98
SacII CCGCGG 1 cut(s) 240
SalI GTCGAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 203, 219, 237
Sau3AI GATC 2 cut(s) 98, 345
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 65, 207, 220
Sfr303I CCGCGG 1 cut(s) 240
SgrBI CCGCGG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 3 cut(s) 227, 237, 239
SspMI CTAG 1 cut(s) 68
StuI AGGCCT 1 cut(s) 128
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 254
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 2 cut(s) 147, 305
TseI GCWGC 2 cut(s) 202, 218
Tsp45I GTSAC 2 cut(s) 147, 305
TspDTI ATGAA 2 cut(s) 53, 188
Vha464I CTTAAG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 254
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.