FvH4_2g26810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016081
Physical Location & Seq
Reverse (-)
21459512 .. 21460335
824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26810.t1

Sequence Viewer

Length: 342 bp
ATGGAGGAGACGGTGAACAAGCTGGTGAACGCCGGAAGGCGCGCGGCGAACAACAACACGGTGATAAGCGTGTGCCTAGTAGGATCCTTCATCGCCCTGGGCGCAAGGTCCATGAAGCAGCAAAACAAAATCGAGGCTCTAGAGGCGGAGAAGGACTCCGTCATCAAGTCGAACAAGGCCACCAAGCAGACCTTGTGGGACTGGAAGCAACAGCTCTATGCCGAAGCCGGCTCCGACTCCGCTCTCGTCCCTCTCGCTAGGATCAAAGCCATCTATGGGGATGCCACTACTCCCCCAATCGCTGCGAAGGAGGATCCAAAATCTGCGAGTTTTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.19

Weight (kDa)

9.1

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48200
fragaria_vesca FvH4_2g26810
malus_domestica MD08G1164500.v1.1
prunus_persica Prupe.1G499600_v2.0.a1
pyrus_communis pycom08g14170 pycom12654g00010
rosa_chinensis RchiOBHm_Chr6g0295671
rosa_laevigata RLG00000011777
rosa_multiflora Rmu_sc0018344.1_g000001
rosa_roxburghii Rroxscaffold_7G00172240
rosa_rugosa Rorug06G0253300
rosa_samantha Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana Rw6G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 2 cut(s) 42, 44
AciI CCGC 3 cut(s) 44, 146, 240
AclWI GGATC 5 cut(s) 78, 91, 269, 308, 321
AfiI CCNNNNNNNGG 1 cut(s) 276
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 22, 214
AluI AGCT 2 cut(s) 22, 214
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 5 cut(s) 78, 91, 269, 308, 321
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 118, 302
AspLEI GCGC 3 cut(s) 42, 44, 104
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 25, 37, 73
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 2 cut(s) 83, 313
BbvI GCAGC 2 cut(s) 130, 289
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 3 cut(s) 77, 140, 258
BisI GCNGC 3 cut(s) 45, 119, 303
BlsI GCNGC 3 cut(s) 46, 120, 304
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 85, 232, 315
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 271
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BsaJI CCNNGG 2 cut(s) 96, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 96, 97
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 206
BsePI GCGCGC 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 130, 289
Bsh1236I CGCG 2 cut(s) 42, 44
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 2 cut(s) 33, 228
BslFI GGGAC 2 cut(s) 212, 233
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 2 cut(s) 212, 233
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 83, 261, 313
BspACI CCGC 3 cut(s) 44, 146, 240
BspANI GGCC 1 cut(s) 179
BspFNI CGCG 2 cut(s) 42, 44
BspLI GGNNCC 3 cut(s) 85, 232, 315
BspPI GGATC 5 cut(s) 78, 91, 269, 308, 321
BsrBI CCGCTC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 96, 97
BssHII GCGCGC 1 cut(s) 40
BssMI GATC 3 cut(s) 83, 261, 313
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 13, 61
BstC8I GCNNGC 2 cut(s) 42, 229
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 2 cut(s) 42, 44
BstHHI GCGC 3 cut(s) 42, 44, 104
BstKTI GATC 3 cut(s) 86, 264, 316
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 3 cut(s) 83, 261, 313
BstMWI GCNNNNNNNGC 2 cut(s) 101, 143
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstUI CGCG 2 cut(s) 42, 44
BstV1I GCAGC 2 cut(s) 130, 289
BstX2I RGATCY 2 cut(s) 83, 313
BstYI RGATCY 2 cut(s) 83, 313
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 42, 229
CfoI GCGC 3 cut(s) 42, 44, 104
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 1 cut(s) 112
CviJI RGCY 7 cut(s) 22, 137, 179, 214, 227, 231, 269
CviKI_1 RGCY 7 cut(s) 22, 137, 179, 214, 227, 231, 269
DpnI GATC 3 cut(s) 85, 263, 315
DpnII GATC 3 cut(s) 83, 261, 313
EciI GGCGGA 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 113, 219, 276
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 2 cut(s) 212, 233
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 45, 119, 303
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 45, 119, 303
FspBI CTAG 3 cut(s) 77, 140, 258
GlaI GCGC 3 cut(s) 41, 43, 103
GluI GCNGC 3 cut(s) 45, 119, 303
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 33, 228
HhaI GCGC 3 cut(s) 42, 44, 104
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 3 cut(s) 40, 42, 102
HinP1I GCGC 3 cut(s) 40, 42, 102
HinfI GANTC 2 cut(s) 155, 236
HpaII CCGG 2 cut(s) 33, 228
HphI GGTGA 3 cut(s) 25, 37, 73
Hpy166II GTNNAC 2 cut(s) 16, 28
Hpy188I TCNGA 2 cut(s) 235, 341
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 16, 28
HpyAV CCTTC 4 cut(s) 30, 97, 145, 301
HpyCH4III ACNGT 2 cut(s) 13, 61
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 143
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 3 cut(s) 40, 42, 102
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 83, 261, 313
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 6 cut(s) 8, 46, 83, 110, 187, 241
Lsp1109I GCAGC 2 cut(s) 130, 289
LweI GCATC 1 cut(s) 271
MaeI CTAG 3 cut(s) 77, 140, 258
MalI GATC 3 cut(s) 85, 263, 315
MbiI CCGCTC 1 cut(s) 242
MboI GATC 3 cut(s) 83, 261, 313
MflI RGATCY 2 cut(s) 83, 313
MlyI GAGTC 2 cut(s) 149, 230
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 4 cut(s) 127, 136, 261, 304
MroNI GCCGGC 1 cut(s) 227
MspI CCGG 2 cut(s) 33, 228
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 2 cut(s) 42, 44
MwoI GCNNNNNNNGC 2 cut(s) 101, 143
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 3 cut(s) 83, 261, 313
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 85, 232, 315
PasI CCCWGGG 1 cut(s) 97
PauI GCGCGC 1 cut(s) 40
PdiI GCCGGC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 46, 120, 304
PleI GAGTC 2 cut(s) 149, 230
PpsI GAGTC 2 cut(s) 149, 230
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 3 cut(s) 85, 232, 315
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 2 cut(s) 83, 313
PsyI GACNNNGTC 1 cut(s) 158
PteI GCGCGC 1 cut(s) 40
SatI GCNGC 3 cut(s) 45, 119, 303
Sau3AI GATC 3 cut(s) 83, 261, 313
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 2 cut(s) 149, 230
ScrFI CCNGG 1 cut(s) 98
SetI ASST 4 cut(s) 24, 110, 194, 216
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 108
SsiI CCGC 3 cut(s) 44, 146, 240
SspMI CTAG 3 cut(s) 77, 140, 258
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 13, 61
TaqI TCGA 2 cut(s) 132, 170
TauI GCSGC 1 cut(s) 47
TseI GCWGC 2 cut(s) 118, 302
TspDTI ATGAA 2 cut(s) 79, 128
TspGWI ACGGA 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 139
XspI CTAG 3 cut(s) 77, 140, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.