MD08G1164500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016081
Physical Location & Seq
Forward (+)
19284140 .. 19285822
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1164500.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGAGTTGGCGAACAAGGTGATGAGCGCCGCCACGAGAGCGGTGAGCAACAACACGGTGATAAACGTGGCCCTGGTGGGTGCGTTCGTTGCACTGAGCGTAAGGTCGGTGAAGCAGCAAAACGACATCGAATCGCTGGAGGCGGAGAAGGCGTCGCTCATCAAGTCGAACAAGGCGGCGAAGCAGACCTTGTGGGACTGGAAGCAGCAGCTCTTCGCGGATGCCGCCTCCGATGACTCTGCCCTGGTTCCGCTTTCCAGGCTCAAAGCCATCTACGGCGAAGCCCCAGTCTCACAAATTGGTGAGGTTGTGAAGGAGGAATCAAAATCTGCTGCCCCCAAATTTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.53

Weight (kDa)

7.95

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48200
fragaria_vesca FvH4_2g26810
malus_domestica MD08G1164500.v1.1
prunus_persica Prupe.1G499600_v2.0.a1
pyrus_communis pycom08g14170 pycom12654g00010
rosa_chinensis RchiOBHm_Chr6g0295671
rosa_laevigata RLG00000011777
rosa_multiflora Rmu_sc0018344.1_g000001
rosa_roxburghii Rroxscaffold_7G00172240
rosa_rugosa Rorug06G0253300
rosa_samantha Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana Rw6G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 218
AciI CCGC 7 cut(s) 30, 41, 143, 176, 218, 225, 251
AcsI RAATTY 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 152
AjnI CCWGG 3 cut(s) 72, 243, 257
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 295
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 115, 205, 208, 332
ApoI RAATTY 1 cut(s) 341
ArsI GACNNNNNNTTYG 3 cut(s) 273, 305, 333
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 5 cut(s) 31, 55, 70, 121, 314
BauI CACGAG 1 cut(s) 34
BbvI GCAGC 4 cut(s) 127, 217, 220, 319
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 3 cut(s) 74, 245, 259
BcoDI GTCTC 1 cut(s) 295
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 7 cut(s) 30, 116, 177, 206, 209, 225, 333
BlsI GCNGC 7 cut(s) 31, 117, 178, 207, 210, 226, 334
Bme1390I CCNGG 3 cut(s) 74, 245, 259
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 3 cut(s) 74, 245, 259
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 72, 243
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 2 cut(s) 203, 287
BseBI CCWGG 3 cut(s) 74, 245, 259
BseDI CCNNGG 2 cut(s) 72, 243
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 203, 287
BseXI GCAGC 4 cut(s) 127, 217, 220, 319
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 1 cut(s) 71
BspACI CCGC 7 cut(s) 30, 41, 143, 176, 218, 225, 251
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 41
BsrI ACTGG 2 cut(s) 203, 287
BssECI CCNNGG 2 cut(s) 72, 243
BssNI GRCGYC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 34
Bst2UI CCWGG 3 cut(s) 74, 245, 259
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 295
BstMWI GCNNNNNNNGC 5 cut(s) 38, 89, 149, 224, 259
BstNI CCWGG 3 cut(s) 74, 245, 259
BstSCI CCNGG 3 cut(s) 72, 243, 257
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 4 cut(s) 127, 217, 220, 319
BstXI CCANNNNNNTGG 1 cut(s) 346
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 141
CviJI RGCY 5 cut(s) 71, 211, 262, 269, 284
CviKI_1 RGCY 5 cut(s) 71, 211, 262, 269, 284
DdeI CTNAG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 72, 243, 257
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 209
Fnu4HI GCNGC 7 cut(s) 30, 116, 177, 206, 209, 225, 333
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 7 cut(s) 30, 116, 177, 206, 209, 225, 333
GlaI GCGC 1 cut(s) 28
GluI GCNGC 7 cut(s) 30, 116, 177, 206, 209, 225, 333
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 131, 236, 320
HphI GGTGA 5 cut(s) 31, 55, 70, 121, 314
Hpy188I TCNGA 2 cut(s) 232, 353
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 142, 307
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 89, 149, 224, 259
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 152
HspAI GCGC 1 cut(s) 27
LguI GCTCTTC 1 cut(s) 218
LpnPI CCDG 9 cut(s) 59, 86, 122, 184, 230, 244, 257, 271, 300
Lsp1109I GCAGC 4 cut(s) 127, 217, 220, 319
LweI GCATC 1 cut(s) 211
MaeII ACGT 1 cut(s) 66
MbiI CCGCTC 1 cut(s) 41
MboII GAAGA 1 cut(s) 205
MluCI AATT 2 cut(s) 297, 341
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 4 cut(s) 133, 238, 298, 310
MspR9I CCNGG 3 cut(s) 74, 245, 259
MvaI CCWGG 3 cut(s) 74, 245, 259
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 5 cut(s) 38, 89, 149, 224, 259
NlaIV GGNNCC 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 131, 320
PkrI GCNGC 7 cut(s) 31, 117, 178, 207, 210, 226, 334
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 72, 243, 257
PspGI CCWGG 3 cut(s) 72, 243, 257
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 7 cut(s) 30, 116, 177, 206, 209, 225, 333
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 74, 245, 259
SetI ASST 6 cut(s) 21, 69, 107, 191, 213, 309
SfaNI GCATC 1 cut(s) 211
Sse9I AATT 2 cut(s) 297, 341
SsiI CCGC 7 cut(s) 30, 41, 143, 176, 218, 225, 251
StyD4I CCNGG 3 cut(s) 72, 243, 257
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 129, 167
TasI AATT 2 cut(s) 297, 341
TauI GCSGC 3 cut(s) 32, 179, 227
TfiI GAWTC 2 cut(s) 131, 320
TscAI CASTG 1 cut(s) 99
TseI GCWGC 4 cut(s) 115, 205, 208, 332
TspRI CASTG 1 cut(s) 99
XapI RAATTY 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.