Rroxscaffold_7G00172240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016081
Physical Location & Seq
Forward (+)
12517455 .. 12520075
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172240.1

Sequence Viewer

Length: 336 bp
ATGGAGGTGGCGAACAAGGTGGTCAGCGCCGGAATGCGAGCAGCGAACAACAGCACGGTGATAAGCGTGTGCCTAGTCGGATCCTTCATTGCTCTGAGCGCAAGGTCAGTGAAGCAGCAAAACAAAATTGAAGCTCTAGAGGCGGAGAAGGACTCCCTCATCAAATCGAACAAGGCCACCAAGCAGACCATGTGGGACTGGAAGCAACAGCTCTATGCCGAAGCCGGCACCGACTCCGCTCTCGTCCCTCTCGCCAGACTCAAGGCCATCTACGGCGAAGCCCCAACTCCCCCAATCGGCAACAGAGAACATACGCTAGCTACAAGAGGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.96

Weight (kDa)

9.41

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48200
fragaria_vesca FvH4_2g26810
malus_domestica MD08G1164500.v1.1
prunus_persica Prupe.1G499600_v2.0.a1
pyrus_communis pycom08g14170 pycom12654g00010
rosa_chinensis RchiOBHm_Chr6g0295671
rosa_laevigata RLG00000011777
rosa_multiflora Rmu_sc0018344.1_g000001
rosa_roxburghii Rroxscaffold_7G00172240
rosa_rugosa Rorug06G0253300
rosa_samantha Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana Rw6G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccBSI CCGCTC 1 cut(s) 239
AciI CCGC 2 cut(s) 143, 237
AclWI GGATC 2 cut(s) 75, 88
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 3 cut(s) 134, 211, 320
AluI AGCT 3 cut(s) 134, 211, 320
AlwI GGATC 2 cut(s) 75, 88
AoxI GGCC 2 cut(s) 174, 264
ApeKI GCWGC 2 cut(s) 41, 115
AspLEI GCGC 2 cut(s) 29, 101
AsuHPI GGTGA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 316
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 53, 127
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 289
BfaI CTAG 3 cut(s) 74, 137, 317
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 2 cut(s) 42, 116
BlsI GCNGC 2 cut(s) 43, 117
BmiI GGNNCC 2 cut(s) 82, 229
BmtI GCTAGC 1 cut(s) 320
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpuEI CTTGAG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 53, 127
BshFI GGCC 2 cut(s) 176, 266
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 30, 225
BslFI GGGAC 2 cut(s) 209, 230
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 2 cut(s) 209, 230
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 176, 266
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 2 cut(s) 143, 237
BspANI GGCC 2 cut(s) 176, 266
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 82, 229
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 2 cut(s) 75, 88
BspT107I GGYRCC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 224
BssMI GATC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 39, 226, 318
BstDEI CTNAG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 101
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 98, 140
BstV1I GCAGC 2 cut(s) 53, 127
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 176, 266
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 39, 226, 318
CfoI GCGC 2 cut(s) 29, 101
Cfr10I RCCGGY 1 cut(s) 224
CviAII CATG 1 cut(s) 190
CviJI RGCY 7 cut(s) 134, 176, 211, 224, 266, 281, 320
CviKI_1 RGCY 7 cut(s) 134, 176, 211, 224, 266, 281, 320
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 158
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 191, 216, 312, 334
FaqI GGGAC 2 cut(s) 209, 230
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 42, 116
Fsp4HI GCNGC 2 cut(s) 42, 116
FspBI CTAG 3 cut(s) 74, 137, 317
GlaI GCGC 2 cut(s) 28, 100
GluI GCNGC 2 cut(s) 42, 116
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 176, 266
HapII CCGG 2 cut(s) 30, 225
HhaI GCGC 2 cut(s) 29, 101
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 2 cut(s) 27, 99
HinP1I GCGC 2 cut(s) 27, 99
HinfI GANTC 3 cut(s) 152, 233, 258
HpaII CCGG 2 cut(s) 30, 225
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 80, 96
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 94, 142
HpyCH4III ACNGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 140
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 2 cut(s) 27, 99
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 43, 184, 238, 268
Lsp1109I GCAGC 2 cut(s) 53, 127
MaeI CTAG 3 cut(s) 74, 137, 317
MalI GATC 1 cut(s) 82
MbiI CCGCTC 1 cut(s) 239
MboI GATC 1 cut(s) 80
MflI RGATCY 1 cut(s) 80
MluCI AATT 1 cut(s) 126
MlyI GAGTC 3 cut(s) 146, 227, 252
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 133, 167, 258, 320
MroNI GCCGGC 1 cut(s) 224
MspI CCGG 2 cut(s) 30, 225
Mva1269I GAATGC 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 98, 140
NaeI GCCGGC 1 cut(s) 226
NdeII GATC 1 cut(s) 80
NgoMIV GCCGGC 1 cut(s) 224
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 82, 229
PctI GAATGC 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 43, 117
PleI GAGTC 3 cut(s) 146, 227, 252
PpsI GAGTC 3 cut(s) 146, 227, 252
PspN4I GGNNCC 2 cut(s) 82, 229
PsuI RGATCY 1 cut(s) 80
SatI GCNGC 2 cut(s) 42, 116
Sau3AI GATC 1 cut(s) 80
SchI GAGTC 3 cut(s) 146, 227, 252
SetI ASST 6 cut(s) 9, 21, 107, 136, 213, 322
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 126
SsiI CCGC 2 cut(s) 143, 237
SspMI CTAG 3 cut(s) 74, 137, 317
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 126
TscAI CASTG 1 cut(s) 114
TseI GCWGC 2 cut(s) 41, 115
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 136
XspI CTAG 3 cut(s) 74, 137, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.