Prupe.1G499600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016081
Physical Location & Seq
Forward (+)
41365244 .. 41366820
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G499600.1

Sequence Viewer

Length: 357 bp
ATGGAGTTCGTTAACAAGGCGGTGAGCGCTGCAACGAAAGCGGCGAAGAACAACACGGTGATAAACGTGTGCCTGGTAGGCTCGTTCATCGCGCTGAGCGTAAGGTCGGTGAGGCAGCAAAACGACATCGAATCGCTGGAGGCGGAGAAGGCGTCTCTCATCAAATCGAACAAGGCTGCGAAGCAGACCATGTGGGACTGGAAGCAGCAGCTTTACGCCGAGGCCTCCTCCACTGGCGGCGCCGTTTTGGTCCCTCTCGCCAGACTCAAAGCCATTTACGGCGAAGCTCCCGTTGCCCAAATTGGAGAGGCTGTGAAGGAAGAATCAAAATCTGCTGCCTCCAAATTTGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.6

Weight (kDa)

9.3

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G48200
fragaria_vesca FvH4_2g26810
malus_domestica MD08G1164500.v1.1
prunus_persica Prupe.1G499600_v2.0.a1
pyrus_communis pycom08g14170 pycom12654g00010
rosa_chinensis RchiOBHm_Chr6g0295671
rosa_laevigata RLG00000011777
rosa_multiflora Rmu_sc0018344.1_g000001
rosa_roxburghii Rroxscaffold_7G00172240
rosa_rugosa Rorug06G0253300
rosa_samantha Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana Rw6G032000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 20, 41, 143, 237
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 2 cut(s) 152, 240
AfeI AGCGCT 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 66
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 211, 287
AluI AGCT 2 cut(s) 211, 287
Alw26I GTCTC 1 cut(s) 159
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 6 cut(s) 29, 115, 176, 205, 208, 335
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 1 cut(s) 336
AspLEI GCGC 3 cut(s) 29, 94, 242
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 34, 70, 121
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 6 cut(s) 16, 127, 163, 217, 220, 322
BceAI ACGGC 2 cut(s) 227, 295
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 2 cut(s) 30, 243
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 8 cut(s) 30, 42, 116, 177, 206, 209, 238, 336
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 8 cut(s) 31, 43, 117, 178, 207, 210, 239, 337
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 241, 252
BmrFI CCNGG 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 95
BsaHI GRCGYC 2 cut(s) 152, 240
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 297, 327
Bse1I ACTGG 2 cut(s) 203, 238
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 203, 238
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 6 cut(s) 16, 127, 163, 217, 220, 322
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 239
BslFI GGGAC 2 cut(s) 209, 236
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 209, 236
BsnI GGCC 1 cut(s) 224
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 4 cut(s) 20, 41, 143, 237
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 87
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 241, 252
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 203, 238
BssECI CCNNGG 1 cut(s) 219
BssNI GRCGYC 2 cut(s) 152, 240
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 2 cut(s) 152, 240
BstDEI CTNAG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 30, 243
BstHHI GCGC 3 cut(s) 29, 94, 242
BstMAI GTCTC 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 26, 38, 78, 149, 293
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 6 cut(s) 16, 127, 163, 217, 220, 322
BstXI CCANNNNNNTGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 231
CfoI GCGC 3 cut(s) 29, 94, 242
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 141
CviAII CATG 1 cut(s) 190
CviJI RGCY 7 cut(s) 81, 176, 211, 224, 272, 287, 311
CviKI_1 RGCY 7 cut(s) 81, 176, 211, 224, 272, 287, 311
DdeI CTNAG 1 cut(s) 95
DinI GGCGCC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 158
Eco147I AGGCCT 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 250
Eco47III AGCGCT 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 193
FaiI YATR 1 cut(s) 191
FaqI GGGAC 2 cut(s) 209, 236
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 30, 42, 116, 177, 206, 209, 238, 336
Fsp4HI GCNGC 8 cut(s) 30, 42, 116, 177, 206, 209, 238, 336
GlaI GCGC 3 cut(s) 28, 93, 241
GluI GCNGC 8 cut(s) 30, 42, 116, 177, 206, 209, 238, 336
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 2 cut(s) 30, 243
HaeIII GGCC 1 cut(s) 224
HgaI GACGC 1 cut(s) 141
HhaI GCGC 3 cut(s) 29, 94, 242
Hin1I GRCGYC 2 cut(s) 152, 240
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 3 cut(s) 27, 92, 240
HinP1I GCGC 3 cut(s) 27, 92, 240
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HinfI GANTC 3 cut(s) 131, 264, 323
HpaI GTTAAC 1 cut(s) 13
HphI GGTGA 3 cut(s) 34, 70, 121
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 142, 310
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 38, 78, 149, 293
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 2 cut(s) 152, 240
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 3 cut(s) 27, 92, 240
KasI GGCGCC 1 cut(s) 239
KspAI GTTAAC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 59, 86, 122, 184, 219, 274
Lsp1109I GCAGC 6 cut(s) 16, 127, 163, 217, 220, 322
MaeII ACGT 1 cut(s) 66
MboII GAAGA 2 cut(s) 58, 332
MluCI AATT 2 cut(s) 300, 344
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 8 cut(s) 105, 133, 214, 235, 238, 264, 301, 349
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 5 cut(s) 26, 38, 78, 149, 293
NarI GGCGCC 1 cut(s) 240
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 241, 252
NmeAIII GCCGAG 1 cut(s) 244
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 96
PfeI GAWTC 2 cut(s) 131, 323
PkrI GCNGC 8 cut(s) 31, 43, 117, 178, 207, 210, 239, 337
PleI GAGTC 1 cut(s) 258
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 241, 252
PspPI GGNCC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 8 cut(s) 30, 42, 116, 177, 206, 209, 238, 336
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 74
SetI ASST 4 cut(s) 69, 107, 213, 289
SfoI GGCGCC 1 cut(s) 241
SinI GGWCC 1 cut(s) 250
Sse9I AATT 2 cut(s) 300, 344
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 4 cut(s) 20, 41, 143, 237
SspDI GGCGCC 1 cut(s) 239
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 129, 167
TasI AATT 2 cut(s) 300, 344
TauI GCSGC 2 cut(s) 44, 240
TfiI GAWTC 2 cut(s) 131, 323
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 238
TseI GCWGC 6 cut(s) 29, 115, 176, 205, 208, 335
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 250
XapI RAATTY 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.