Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012654

Orthogroup ID

OG0016081

Physical Location & Seq

Genomic Coordinates Forward (+)

4286 .. 4940

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12654g00010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGAGTTGGCGAACAAGGTGGTGAGCGCTGCCACGAGAGCGGTGAGCAACAACACGGTGATAAACGTGGCCCTGGTGGGTGCGTTCGTTGCACTAAGCGTAAGGTCGGTGAAGCAGCAAAACGACATCGAATCGCTGGAGGCGGAGAAGGCGTCGCTCATCAAGTCGAACAAGGCGGCGAAGCAGACCTTGTGGGACTGGAAGCAGCAGCTCTTCGCGGATGCCGCCTCCACCGACTCCGCCCTGGTTCCGCTTTCCAGGCTCAAAGCCATCTACGGCGAAGCCCCAGTCTCACAAATTGGTGAGGTTGTGAAGGAGGAATCAAAATCTGCTGCCCCCAAATTTGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.49

Weight (kDa)

8.96

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48200
fragaria_vesca	FvH4_2g26810
malus_domestica	MD08G1164500.v1.1
prunus_persica	Prupe.1G499600_v2.0.a1
pyrus_communis	pycom08g14170 pycom12654g00010
rosa_chinensis	RchiOBHm_Chr6g0295671
rosa_laevigata	RLG00000011777
rosa_multiflora	Rmu_sc0018344.1_g000001
rosa_roxburghii	Rroxscaffold_7G00172240
rosa_rugosa	Rorug06G0253300
rosa_samantha	Rh6AG366600 Rh6BG374500 Rh6CG380800
rosa_wichuraiana	Rw6G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	218
AciI	CCGC	7 cut(s)	41, 143, 176, 218, 225, 240, 251
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	72, 243, 257
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	28
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	5 cut(s)	29, 115, 205, 208, 332
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	3 cut(s)	273, 305, 333
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	5 cut(s)	34, 55, 70, 121, 314
BauI	CACGAG	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	16, 127, 217, 220, 319
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	3 cut(s)	74, 245, 259
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	7 cut(s)	30, 116, 177, 206, 209, 225, 333
BlsI	GCNGC	7 cut(s)	31, 117, 178, 207, 210, 226, 334
Bme1390I	CCNGG	3 cut(s)	74, 245, 259
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	3 cut(s)	74, 245, 259
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	72, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	2 cut(s)	203, 287
BseBI	CCWGG	3 cut(s)	74, 245, 259
BseDI	CCNNGG	2 cut(s)	72, 243
BseGI	GGATG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	203, 287
BseXI	GCAGC	5 cut(s)	16, 127, 217, 220, 319
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	71
BspACI	CCGC	7 cut(s)	41, 143, 176, 218, 225, 240, 251
BspANI	GGCC	1 cut(s)	71
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	203, 287
BssECI	CCNNGG	2 cut(s)	72, 243
BssNI	GRCGYC	1 cut(s)	152
BssSI	CACGAG	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	74, 245, 259
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 89, 149, 224, 259
BstNI	CCWGG	3 cut(s)	74, 245, 259
BstSCI	CCNGG	3 cut(s)	72, 243, 257
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	5 cut(s)	16, 127, 217, 220, 319
BstXI	CCANNNNNNTGG	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	226
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	141
CviJI	RGCY	5 cut(s)	71, 211, 262, 269, 284
CviKI_1	RGCY	5 cut(s)	71, 211, 262, 269, 284
DdeI	CTNAG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	2 cut(s)	158, 229
Eco47III	AGCGCT	1 cut(s)	28
EcoRII	CCWGG	3 cut(s)	72, 243, 257
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	209
Fnu4HI	GCNGC	7 cut(s)	30, 116, 177, 206, 209, 225, 333
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	7 cut(s)	30, 116, 177, 206, 209, 225, 333
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	7 cut(s)	30, 116, 177, 206, 209, 225, 333
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	131, 236, 320
HphI	GGTGA	5 cut(s)	34, 55, 70, 121, 314
Hpy188I	TCNGA	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	142, 307
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 89, 149, 224, 259
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	152
HspAI	GCGC	1 cut(s)	27
LguI	GCTCTTC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	59, 86, 122, 184, 230, 244, 257, 271, 300
Lsp1109I	GCAGC	5 cut(s)	16, 127, 217, 220, 319
LweI	GCATC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	205
MluCI	AATT	2 cut(s)	297, 341
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	4 cut(s)	133, 238, 298, 310
MspR9I	CCNGG	3 cut(s)	74, 245, 259
MvaI	CCWGG	3 cut(s)	74, 245, 259
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	38, 89, 149, 224, 259
NlaIV	GGNNCC	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	131, 320
PkrI	GCNGC	7 cut(s)	31, 117, 178, 207, 210, 226, 334
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	72, 243, 257
PspGI	CCWGG	3 cut(s)	72, 243, 257
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	218
SatI	GCNGC	7 cut(s)	30, 116, 177, 206, 209, 225, 333
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	74, 245, 259
SetI	ASST	6 cut(s)	21, 69, 107, 191, 213, 309
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	297, 341
SsiI	CCGC	7 cut(s)	41, 143, 176, 218, 225, 240, 251
StyD4I	CCNGG	3 cut(s)	72, 243, 257
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	129, 167
TasI	AATT	2 cut(s)	297, 341
TauI	GCSGC	2 cut(s)	179, 227
TfiI	GAWTC	2 cut(s)	131, 320
TseI	GCWGC	5 cut(s)	29, 115, 205, 208, 332
XapI	RAATTY	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.