Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003552

Physical Location & Seq

Genomic Coordinates Forward (+)

39979906 .. 39983836

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0253300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGATAATGAGATGATTGAATTCGATATCGGGTTAGGAGGCCGGGAGGGGGATGATGATTTTGTCGAAATTGAGCACCCGGTCGAAGATGAAGAGATGGTTGATAGCCCTCTACTTGGCAGTGCTAGTGGCAGTGCCAATGGCGTCGGGTTTAGTGGAGGGAGTGGTGAAATTTACCTTCCTGAGGGGGACCTCTTGGACCTTGAACCGTATGATGGCATGGAGTTTGAGTCTGAAGAGGCTGCCAAGGCATTCTACAATTCATATGCCCGCCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCGCGTCGTTCCAGGCGCGATGGAGCCATCATACAGAGGCAATTTGTTTGTGCGAAAGAGGGTTTTCGGAATTTGAATGAGAAGCGCACCAAGGATAGAGAGATCAAGCGCCCGCGGACTGTCACTAGAGTAGGATGCAAAGCGTCCTTGTCTGTAAAGATGCAAGATTCGGGGAAATGGGTTGTGTCTGGATTTGTTAAAGAGCATAATCATGAGTTGGTTCCCCCTGATCAGGTGCATTGCCTTCGGTCGCACAGGCAGATATCTGGTCCTGCTAAGACCTTGATTGATACATTGCAGGCAGCTGGAATGGGTCCCAGAAGGATCATGTCAGCACTGATTAAAGAATATGGTGGAATAAGCAGAGTTGGATTTACAGAGGTTGACTGTAGGAATTACATGAGGAATAATCGCCAGAGGAGCTTGGATGGGGATATTCAGATGCTATTGGATTATTTGAGACAAATGCAAGCAGATAACCAGAACTTCTTCTATGCTGTTCAGGGCGATGAGGATCAGGCCATGGGCAATGTCATCTGGGCTGATCCAAAGGCAAGGACGAACTACAATTACTTTGGTGATACTGTTACTTTTGATACTACCTACAGGTCGAACAGGTACCGTTTGCCCTTTGCACCTATCACAGGGATAAACCACCACGGGCAGCCTGTATTGTTTGGTTGTGCTTTTCTGATAAATGAGTCTGAAGCATCATTTGTTTGGCTGTTTAAAACATGGCTTATGGCAATGTCAGGCCGCCCTCCGTTGTCAATTACCACTGACCATGATCCTGTGATACAGTCAGCTATCATGCAGGTCTTCCCACAGACCCGTCACCGATTCTGCAAATGGCACATTTTCAAAAAATGCCAGGAGAAACTATCCCATGTGTTTCTTCAACATCCAAGTTTTGAAGCAGACTTTCACAAATGTGTCAATTTGACTGAGTCAATAGAAGAATTTGAGTCTTGCTGGTTGTCTCTTGTTGATAGATACGATCTCAGGGATCATGAATGGCTTCAAACAGTATACTCTGCTCGCAGGCAGTGGGTCCCTGTCTATCTGCGTGACACCTTTTTTGCAGAAATGTCCATAACCCAGAGAAGTGATAGTATGAACTCATATTTTGATGGTTATGTGAATGCTTCAACGAATCTGAGTCAGTTCTTTAAGCTCTATGAGAAAGCTCTGGAGAGTCGCAATGAGAAGGAAGTGAAAGCAGATTTTGACACTATGAACACTTCCCCAGTTCTGAAGACCCCATCTCCAATGGAAAAGCAAGCCTCTGAGTTTTATACAAAAAAAATATTTATGAGGTTTCAAGAGGAGCTAGTTGGGACATTAACTTTCACAGCATCCAAGGGCGATGATGATGGGGAGATCATCTCATATCAAGTAGCAAAGTTTGGGGAGGACCATAAAGCATATTATGTTAAACTAAATGTTCTGGACATGATGGCAAGTTGTAGTTGCCAGATGTTTGAGTTTTCAGGTCTTCTTTGCAGACATGTATTAGCAGTCTTTCGAGTGACCAATGTGCTAACTCTGCCATCTCATTACATATTGAAACGATGGACAAGAAATGCCAAGAGCAGCGTTATGTTAGAAGAACGTTCTAGTGATGTATATACCAATTATCTAGAATCTCATACTGTTAGATACAATACTTTACGCCATGAGGCCTTTAAATTTGTAGATGGAGCAAAGTCCTCAGAAACTTACGACCTTGCCCTGGATGCTTTAAAAGAAGCTGCAAAAAAAGTAGCTCATGCAATTAAGAATGATGGGAGAAATGTCATGGTGAACGGGCATATCAGGGGAAACTTGGCTGGTGGTGGAAGTCGGGCCAATTATACCATTGGGGATCATGATGGGAGTTCTGGCCAGAATTTGTCTGAGGATGATATGGACAAAAAAATTCGGGAACTTACATATGAGCTGGAGTGTGCTAATCGAAAGTGTGAAGTTTATCGGGCTAACCTACTTTCACTTTTGAAAGACATTGAGGATCATAAGTTGCAATTGTCAATTAAAGTGGAAAACATTAAGATTAGCATGAAAGACGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010605 GO:0016043 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032268 GO:0032269 GO:0032434 GO:0032435 GO:0033036 GO:0033365 GO:0033554 GO:0034613 GO:0034976 GO:0036503 GO:0042176 GO:0042177 GO:0042221 GO:0043161 GO:0043170 GO:0043621 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045048 GO:0045184 GO:0045861 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051205 GO:0051234 GO:0051246 GO:0051248 GO:0051603 GO:0051641 GO:0051716 GO:0060255 GO:0061024 GO:0061136 GO:0065007 GO:0070727 GO:0071704 GO:0071816 GO:0071840 GO:0072657 GO:0080090 GO:0080134 GO:0080135 GO:0090150 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901799 GO:1903050 GO:1903051 GO:1903069 GO:1903070 GO:1903362 GO:1903363 GO:1903573 GO:1904292 GO:1904293 GO:1905897 GO:2000058 GO:2000059

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SGTA_dimer TPR_1 TPR_11 TPR_17 TPR_2

Protein Analysis

791

Amino Acids

90.46

Weight (kDa)

6.07

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	85 - 176	7.7e-34	FAR1 DNA-binding domain
MULE	PF10551	297 - 390	1.2e-30	MULE transposase domain
SWIM	PF04434	585 - 610	9.5e-10	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77600 AT1G77600 AT1G77600
fragaria_vesca	FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g27295
malus_domestica	MD08G1164000.v1.1 MD15G1350300.v1.1
prunus_persica	Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1
pyrus_communis	pycom08g14110 pycom15g31310
rosa_chinensis	RchiOBHm_Chr6g0295681
rosa_laevigata	RLG00000011776
rosa_multiflora	Rmu_sc0017142.1_g000001 Rmu_sc0018344.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172230
rosa_rugosa	Rorug06G0253300
rosa_samantha	Rh6AG366700 Rh6BG170200 Rh6BG374600 Rh6CG380900 Rh6DG367700
rosa_wichuraiana	Rw6G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1108
Acc65I	GGTACC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	921
AccI	GTMKAC	1 cut(s)	1332
AccII	CGCG	3 cut(s)	307, 321, 418
AciI	CCGC	4 cut(s)	271, 416, 418, 1060
AclI	AACGTT	1 cut(s)	1915
AclWI	GGATC	7 cut(s)	635, 825, 842, 1085, 1317, 2175, 2319
AcoI	YGGCCR	1 cut(s)	2185
AcsI	RAATTY	7 cut(s)	20, 171, 373, 1262, 1991, 2191, 2220
AcuI	CTGAAG	3 cut(s)	255, 1029, 1577
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	289, 923
AfiI	CCNNNNNNNGG	7 cut(s)	49, 116, 184, 215, 535, 947, 2035
AflIII	ACRYGT	1 cut(s)	1810
AjnI	CCWGG	3 cut(s)	314, 1173, 2034
AleI	CACNNNNGTG	1 cut(s)	1233
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	757, 1287
AlwI	GGATC	7 cut(s)	635, 825, 842, 1085, 1317, 2175, 2319
AoxI	GGCC	6 cut(s)	40, 822, 1057, 1983, 2148, 2185
ApeKI	GCWGC	5 cut(s)	242, 605, 967, 1896, 2054
ApoI	RAATTY	7 cut(s)	20, 171, 373, 1262, 1991, 2191, 2220
ArsI	GACNNNNNNTTYG	2 cut(s)	1364, 1396
Asp700I	GAANNNNTTC	2 cut(s)	791, 1320
Asp718I	GGTACC	1 cut(s)	921
AspLEI	GCGC	3 cut(s)	321, 390, 414
AspS9I	GGNCC	7 cut(s)	190, 199, 572, 617, 1354, 1717, 2148
AsuC2I	CCSGG	2 cut(s)	44, 80
AsuHPI	GGTGA	4 cut(s)	179, 893, 1130, 2116
AvaII	GGWCC	6 cut(s)	190, 199, 572, 617, 1354, 1717
AxyI	CCTNAGG	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	2187
BanI	GGYRCC	1 cut(s)	921
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	3 cut(s)	1114, 1565, 1790
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	229, 617, 979, 1908, 2041
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	3 cut(s)	316, 1175, 2036
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	2 cut(s)	44, 80
BcoDI	GTCTC	2 cut(s)	757, 1287
BfaI	CTAG	5 cut(s)	126, 429, 1634, 1920, 1943
BfmI	CTRYAG	2 cut(s)	691, 907
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	6 cut(s)	243, 606, 968, 1060, 1897, 2055
BlsI	GCNGC	6 cut(s)	244, 607, 969, 1061, 1898, 2056
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	5 cut(s)	44, 80, 316, 1175, 2036
Bme18I	GGWCC	6 cut(s)	190, 199, 572, 617, 1354, 1717
BmgT120I	GGNCC	7 cut(s)	190, 199, 572, 617, 1354, 1717, 2148
BmiI	GGNNCC	8 cut(s)	191, 328, 525, 618, 619, 923, 1355, 1356
BmrFI	CCNGG	5 cut(s)	44, 80, 316, 1175, 2036
BmrI	ACTGGG	1 cut(s)	1544
BmsI	GCATC	6 cut(s)	428, 453, 735, 1022, 1667, 2029
BmuI	ACTGGG	1 cut(s)	1544
BpiI	GAAGAC	3 cut(s)	1114, 1565, 1790
BplI	GAGNNNNNCTC	2 cut(s)	1673, 1705
BpmI	CTGGAG	2 cut(s)	1514, 2264
BpuMI	CCSGG	2 cut(s)	44, 80
BsaBI	GATNNNNATC	1 cut(s)	816
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	7 cut(s)	246, 393, 416, 825, 961, 1662, 2034
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 1552, 1582
Bsc4I	CCNNNNNNNGG	7 cut(s)	49, 116, 184, 215, 535, 947, 2035
Bse1I	ACTGG	1 cut(s)	1550
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	5 cut(s)	541, 596, 838, 1056, 1510
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	316, 1175, 2036
BseDI	CCNNGG	7 cut(s)	246, 393, 416, 825, 961, 1662, 2034
BseGI	GGATG	7 cut(s)	58, 443, 736, 1204, 1658, 2044, 2209
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	7 cut(s)	49, 116, 184, 215, 535, 947, 2035
BseMI	GCAATG	5 cut(s)	541, 596, 838, 1056, 1510
BseMII	CTCAG	7 cut(s)	174, 1239, 1318, 1451, 1581, 2028, 2190
BseNI	ACTGG	1 cut(s)	1550
BseRI	GAGGAG	3 cut(s)	292, 736, 1643
BseXI	GCAGC	5 cut(s)	229, 617, 979, 1908, 2041
Bsh1236I	CGCG	3 cut(s)	307, 321, 418
Bsh1285I	CGRYCG	2 cut(s)	84, 554
BshFI	GGCC	6 cut(s)	42, 824, 1059, 1985, 2150, 2187
BshNI	GGYRCC	1 cut(s)	921
BsiEI	CGRYCG	2 cut(s)	84, 554
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	43, 80
BslFI	GGGAC	4 cut(s)	203, 603, 1340, 1654
BslI	CCNNNNNNNGG	7 cut(s)	49, 116, 184, 215, 535, 947, 2035
BsmAI	GTCTC	2 cut(s)	757, 1287
BsmFI	GGGAC	4 cut(s)	203, 603, 1340, 1654
BsmI	GAATGC	2 cut(s)	251, 1450
BsnI	GGCC	6 cut(s)	42, 824, 1059, 1985, 2150, 2187
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	4 cut(s)	271, 416, 418, 1060
BspANI	GGCC	6 cut(s)	42, 824, 1059, 1985, 2150, 2187
BspCNI	CTCAG	7 cut(s)	175, 1240, 1317, 1452, 1582, 2027, 2191
BspFNI	CGCG	3 cut(s)	307, 321, 418
BspHI	TCATGA	3 cut(s)	514, 1312, 2170
BspLI	GGNNCC	8 cut(s)	191, 328, 525, 618, 619, 923, 1355, 1356
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	7 cut(s)	635, 825, 842, 1085, 1317, 2175, 2319
BspT107I	GGYRCC	1 cut(s)	921
BsrDI	GCAATG	5 cut(s)	541, 596, 838, 1056, 1510
BsrI	ACTGG	1 cut(s)	1550
BssECI	CCNNGG	7 cut(s)	246, 393, 416, 825, 961, 1662, 2034
BssNAI	GTATAC	1 cut(s)	1333
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	4 cut(s)	246, 393, 825, 1662
Bst1107I	GTATAC	1 cut(s)	1333
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	316, 1175, 2036
Bst4CI	ACNGT	8 cut(s)	210, 424, 692, 889, 926, 1104, 1330, 1957
Bst6I	CTCTTC	2 cut(s)	87, 231
BstACI	GRCGYC	1 cut(s)	144
BstC8I	GCNNGC	7 cut(s)	271, 416, 603, 774, 1342, 1346, 1584
BstDEI	CTNAG	8 cut(s)	183, 579, 1248, 1304, 1460, 1590, 2014, 2199
BstDSI	CCRYGG	3 cut(s)	416, 825, 961
BstENI	CCTNNNNNAGG	2 cut(s)	182, 945
BstF5I	GGATG	7 cut(s)	58, 443, 736, 1204, 1658, 2044, 2209
BstFNI	CGCG	3 cut(s)	307, 321, 418
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	3 cut(s)	321, 390, 414
BstMAI	GTCTC	2 cut(s)	757, 1287
BstMCI	CGRYCG	2 cut(s)	84, 554
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 723, 1849, 2039
BstNI	CCWGG	3 cut(s)	316, 1175, 2036
BstNSI	RCATGY	1 cut(s)	1814
BstSCI	CCNGG	5 cut(s)	42, 78, 314, 1173, 2034
BstSFI	CTRYAG	2 cut(s)	691, 907
BstUI	CGCG	3 cut(s)	307, 321, 418
BstV1I	GCAGC	5 cut(s)	229, 617, 979, 1908, 2041
BstV2I	GAAGAC	3 cut(s)	1114, 1565, 1790
BstZ17I	GTATAC	1 cut(s)	1333
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	6 cut(s)	42, 824, 1059, 1985, 2150, 2187
BtgI	CCRYGG	3 cut(s)	416, 825, 961
BtgZI	GCGATG	3 cut(s)	336, 825, 1683
BtsCI	GGATG	7 cut(s)	58, 443, 736, 1204, 1658, 2044, 2209
BtsI	GCAGTG	3 cut(s)	127, 139, 1355
BtsIMutI	CAGTG	5 cut(s)	127, 139, 638, 1080, 1355
BveI	ACCTGC	1 cut(s)	1108
Cac8I	GCNNGC	7 cut(s)	271, 416, 603, 774, 1342, 1346, 1584
CciI	TCATGA	3 cut(s)	514, 1312, 2170
CfoI	GCGC	3 cut(s)	321, 390, 414
Cfr13I	GGNCC	7 cut(s)	190, 199, 572, 617, 1354, 1717, 2148
Cfr42I	CCGCGG	1 cut(s)	419
CseI	GACGC	3 cut(s)	133, 296, 435
Csp6I	GTAC	2 cut(s)	288, 922
CspCI	CAANNNNNGTGG	2 cut(s)	2319, 2354
CviQI	GTAC	2 cut(s)	288, 922
DdeI	CTNAG	8 cut(s)	183, 579, 1248, 1304, 1460, 1590, 2014, 2199
DraI	TTTAAA	3 cut(s)	1033, 1990, 2046
EaeI	YGGCCR	1 cut(s)	2185
Eam1104I	CTCTTC	2 cut(s)	87, 231
EarI	CTCTTC	2 cut(s)	87, 231
Eco130I	CCWWGG	4 cut(s)	246, 393, 825, 1662
Eco147I	AGGCCT	1 cut(s)	1985
Eco32I	GATATC	2 cut(s)	28, 567
Eco47I	GGWCC	6 cut(s)	190, 199, 572, 617, 1354, 1717
Eco57I	CTGAAG	3 cut(s)	255, 1029, 1577
Eco81I	CCTNAGG	1 cut(s)	183
EcoNI	CCTNNNNNAGG	2 cut(s)	182, 945
EcoO109I	RGGNCCY	3 cut(s)	190, 617, 1354
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	3 cut(s)	314, 1173, 2034
EcoRV	GATATC	2 cut(s)	28, 567
EcoT14I	CCWWGG	4 cut(s)	246, 393, 825, 1662
ErhI	CCWWGG	4 cut(s)	246, 393, 825, 1662
FaqI	GGGAC	4 cut(s)	203, 603, 1340, 1654
FauI	CCCGC	2 cut(s)	278, 423
FauNDI	CATATG	2 cut(s)	265, 2236
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	1332
Fnu4HI	GCNGC	6 cut(s)	243, 606, 968, 1060, 1897, 2055
FokI	GGATG	7 cut(s)	65, 450, 743, 1191, 1645, 2051, 2216
Fsp4HI	GCNGC	6 cut(s)	243, 606, 968, 1060, 1897, 2055
FspBI	CTAG	5 cut(s)	126, 429, 1634, 1920, 1943
GlaI	GCGC	3 cut(s)	320, 389, 413
GluI	GCNGC	6 cut(s)	243, 606, 968, 1060, 1897, 2055
GsuI	CTGGAG	2 cut(s)	1514, 2264
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	6 cut(s)	42, 824, 1059, 1985, 2150, 2187
HapII	CCGG	2 cut(s)	43, 80
HgaI	GACGC	3 cut(s)	133, 296, 435
HhaI	GCGC	3 cut(s)	321, 390, 414
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	3 cut(s)	319, 388, 412
HinP1I	GCGC	3 cut(s)	319, 388, 412
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	43, 80
HphI	GGTGA	4 cut(s)	179, 893, 1130, 2116
Hpy166II	GTNNAC	3 cut(s)	688, 1333, 2107
Hpy8I	GTNNAC	3 cut(s)	688, 1333, 2107
Hpy99I	CGWCG	2 cut(s)	149, 312
HpyAV	CCTTC	4 cut(s)	188, 557, 618, 1504
HpyCH4III	ACNGT	8 cut(s)	210, 424, 692, 889, 926, 1104, 1330, 1957
HpyCH4IV	ACGT	1 cut(s)	1915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 723, 1849, 2039
HpyF3I	CTNAG	8 cut(s)	183, 579, 1248, 1304, 1460, 1590, 2014, 2199
HpySE526I	ACGT	1 cut(s)	1915
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	3 cut(s)	319, 388, 412
KflI	GGGWCCC	2 cut(s)	617, 1354
KpnI	GGTACC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	532
KspI	CCGCGG	1 cut(s)	419
LmnI	GCTCC	5 cut(s)	305, 326, 723, 1630, 2003
Lsp1109I	GCAGC	5 cut(s)	229, 617, 979, 1908, 2041
LweI	GCATC	6 cut(s)	428, 453, 735, 1022, 1667, 2029
MaeI	CTAG	5 cut(s)	126, 429, 1634, 1920, 1943
MaeII	ACGT	1 cut(s)	1915
MaeIII	GTNAC	5 cut(s)	424, 889, 1136, 1370, 1831
MfeI	CAATTG	1 cut(s)	2324
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	2187
MluNI	TGGCCA	1 cut(s)	2187
MlyI	GAGTC	6 cut(s)	239, 1013, 1259, 1277, 1471, 1507
MmeI	TCCRAC	1 cut(s)	652
Mox20I	TGGCCA	1 cut(s)	2187
MroXI	GAANNNNTTC	2 cut(s)	791, 1320
MscI	TGGCCA	1 cut(s)	2187
MslI	CAYNNNNRTG	2 cut(s)	513, 1233
Msp20I	TGGCCA	1 cut(s)	2187
MspA1I	CMGCKG	2 cut(s)	418, 608
MspI	CCGG	2 cut(s)	43, 80
MspR9I	CCNGG	5 cut(s)	44, 80, 316, 1175, 2036
MunI	CAATTG	1 cut(s)	2324
Mva1269I	GAATGC	2 cut(s)	251, 1450
MvaI	CCWGG	3 cut(s)	316, 1175, 2036
MvnI	CGCG	3 cut(s)	307, 321, 418
MwoI	GCNNNNNNNGC	4 cut(s)	248, 723, 1849, 2039
NciI	CCSGG	2 cut(s)	44, 80
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	2 cut(s)	265, 2236
NlaIV	GGNNCC	8 cut(s)	191, 328, 525, 618, 619, 923, 1355, 1356
NmuCI	GTSAC	4 cut(s)	424, 1136, 1370, 1831
NspI	RCATGY	1 cut(s)	1814
OliI	CACNNNNGTG	1 cut(s)	1233
PagI	TCATGA	3 cut(s)	514, 1312, 2170
PceI	AGGCCT	1 cut(s)	1985
PciI	ACATGT	1 cut(s)	1810
PctI	GAATGC	2 cut(s)	251, 1450
PdmI	GAANNNNTTC	2 cut(s)	791, 1320
PfeI	GAWTC	4 cut(s)	470, 1143, 1456, 1946
PflFI	GACNNNGTC	1 cut(s)	1249
PkrI	GCNGC	6 cut(s)	244, 607, 969, 1061, 1898, 2056
PleI	GAGTC	6 cut(s)	238, 1012, 1258, 1276, 1470, 1506
PpsI	GAGTC	6 cut(s)	238, 1012, 1258, 1276, 1470, 1506
PpuMI	RGGWCCY	3 cut(s)	190, 617, 1354
PscI	ACATGT	1 cut(s)	1810
Psp1406I	AACGTT	1 cut(s)	1915
Psp5II	RGGWCCY	3 cut(s)	190, 617, 1354
Psp6I	CCWGG	3 cut(s)	314, 1173, 2034
PspGI	CCWGG	3 cut(s)	314, 1173, 2034
PspN4I	GGNNCC	8 cut(s)	191, 328, 525, 618, 619, 923, 1355, 1356
PspPI	GGNCC	7 cut(s)	190, 199, 572, 617, 1354, 1717, 2148
PspPPI	RGGWCCY	3 cut(s)	190, 617, 1354
PsrI	GAACNNNNNNTAC	2 cut(s)	857, 889
PsyI	GACNNNGTC	1 cut(s)	1249
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	289, 923
RsaNI	GTAC	2 cut(s)	288, 922
RseI	CAYNNNNRTG	2 cut(s)	513, 1233
SacII	CCGCGG	1 cut(s)	419
SatI	GCNGC	6 cut(s)	243, 606, 968, 1060, 1897, 2055
Sau96I	GGNCC	7 cut(s)	190, 199, 572, 617, 1354, 1717, 2148
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	6 cut(s)	239, 1013, 1259, 1277, 1471, 1507
ScrFI	CCNGG	5 cut(s)	44, 80, 316, 1175, 2036
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	6 cut(s)	428, 453, 735, 1022, 1667, 2029
SfcI	CTRYAG	2 cut(s)	691, 907
Sfr303I	CCGCGG	1 cut(s)	419
SgrBI	CCGCGG	1 cut(s)	419
SinI	GGWCC	6 cut(s)	190, 199, 572, 617, 1354, 1717
SmiMI	CAYNNNNRTG	2 cut(s)	513, 1233
SseBI	AGGCCT	1 cut(s)	1985
SsiI	CCGC	4 cut(s)	271, 416, 418, 1060
SspI	AATATT	1 cut(s)	1611
SspMI	CTAG	5 cut(s)	126, 429, 1634, 1920, 1943
StuI	AGGCCT	1 cut(s)	1985
StyD4I	CCNGG	5 cut(s)	42, 78, 314, 1173, 2034
StyI	CCWWGG	4 cut(s)	246, 393, 825, 1662
TaaI	ACNGT	8 cut(s)	210, 424, 692, 889, 926, 1104, 1330, 1957
TaiI	ACGT	1 cut(s)	1918
TaqI	TCGA	6 cut(s)	24, 66, 84, 914, 1828, 2257
TaqII	GACCGA	1 cut(s)	540
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	1 cut(s)	1062
TfiI	GAWTC	4 cut(s)	470, 1143, 1456, 1946
TscAI	CASTG	5 cut(s)	127, 139, 645, 1087, 1355
TseFI	GTSAC	4 cut(s)	424, 1136, 1370, 1831
TseI	GCWGC	5 cut(s)	242, 605, 967, 1896, 2054
Tsp45I	GTSAC	4 cut(s)	424, 1136, 1370, 1831
TspDTI	ATGAA	6 cut(s)	105, 252, 1329, 1433, 1553, 2375
TspGWI	ACGGA	1 cut(s)	1056
TspRI	CASTG	5 cut(s)	127, 139, 645, 1087, 1355
Tth111I	GACNNNGTC	1 cut(s)	1249
VpaK11BI	GGWCC	6 cut(s)	190, 199, 572, 617, 1354, 1717
XagI	CCTNNNNNAGG	2 cut(s)	182, 945
XapI	RAATTY	7 cut(s)	20, 171, 373, 1262, 1991, 2191, 2220
XbaI	TCTAGA	1 cut(s)	1942
XceI	RCATGY	1 cut(s)	1814
XmiI	GTMKAC	1 cut(s)	1332
XmnI	GAANNNNTTC	2 cut(s)	791, 1320
XspI	CTAG	5 cut(s)	126, 429, 1634, 1920, 1943
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.