Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003552

Physical Location & Seq

Genomic Coordinates Reverse (-)

19266254 .. 19269175

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1164000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGGATATTAACTGCAATGATCTAGTTCTCGAAATGTTTAATATATTCTTCTCTGTTGTGAGGCAACACCATCAGCAGAGTTTGATAAATGATATTTTGTCTATAATGGTTCATATACTAAACGAGGAAGCTTCTCAGCCACTTTTGAATGTGGTTCTACAAAATCTTGTGAAGGAGTTAAAGAATGCAGACTGTGCTTCTTCCCAGCTTTCAGTTTCTGTGATTCAAACGTGCGCAGACAAACTTGAGTCCTTTGTTTGTGGGGTTCTGACATCTTGTATTTTGGATGGAGATGCTGATGGGAGTGAGCTCAGAGAATTTTACCATTATATCATTTTTAAATTTTTTGGGTGTGCTCCTCAGATGCTTCTTGCTGTCATTCCAAATTTGACTCAAGAGTTATTGACTGATCAGGTTGATGTGCAACTAAAAGCTGTTAATTTGATTGGAAAACTTTTCACACTGCCTGATCACCATAGTGCACAAAGGTATCATGACCAATCCCTCTGGGGCAGAATCACAAGAACTGCCCTTGAAAGTCGACTTCTAGATTTTGATGATAGAGTGAGAACACAAGCAGTAGTTGTTGCCTGTGATCTTGCCATGTCTAATATGATATGCTTTCCTCCCAAAATAATATCTCAGACCACTGAAAGACTTCTGGACAAGAAGATACCTATTAGAAAGAAAGCTCTGCAGAAGTTGATGGAAGCATATCGAGATTATTGTAACAAATGCTTTGAAGGCAACATGACGATAAGTGACCACTTTGAACAGATTCCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.95

Weight (kDa)

5.46

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDS5	PF20168	1 - 167	3.8e-42	Sister chromatid cohesion protein PDS5 protein
PDS5	PF20168	177 - 263	5.5e-23	Sister chromatid cohesion protein PDS5 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003552)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77600 AT1G77600 AT1G77600
fragaria_vesca	FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g26820 FvH4_2g27295
malus_domestica	MD08G1164000.v1.1 MD15G1350300.v1.1
prunus_persica	Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1 Prupe.1G499400_v2.0.a1
pyrus_communis	pycom08g14110 pycom15g31310
rosa_chinensis	RchiOBHm_Chr6g0295681
rosa_laevigata	RLG00000011776
rosa_multiflora	Rmu_sc0017142.1_g000001 Rmu_sc0018344.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172230
rosa_rugosa	Rorug06G0253300
rosa_samantha	Rh6AG366700 Rh6BG170200 Rh6BG374600 Rh6CG380900 Rh6DG367700
rosa_wichuraiana	Rw6G032010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	544
AcsI	RAATTY	3 cut(s)	320, 344, 388
AgsI	TTSAA	5 cut(s)	151, 230, 539, 746, 776
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	134, 211, 313, 437, 695
AluI	AGCT	5 cut(s)	134, 211, 313, 437, 695
Alw21I	GWGCWC	3 cut(s)	315, 361, 487
Alw44I	GTGCAC	1 cut(s)	483
AlwNI	CAGNNNCTG	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	483
ApoI	RAATTY	3 cut(s)	320, 344, 388
Asp700I	GAANNNNTTC	2 cut(s)	660, 780
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	487
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	3 cut(s)	315, 361, 487
BccI	CCATC	4 cut(s)	81, 284, 296, 703
BclI	TGATCA	2 cut(s)	412, 472
BfaI	CTAG	2 cut(s)	26, 551
BfmI	CTRYAG	1 cut(s)	698
BmsI	GCATC	2 cut(s)	286, 357
BpuEI	CTTGAG	2 cut(s)	269, 381
Bse3DI	GCAATG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	4 cut(s)	152, 328, 377, 659
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	315, 361, 487
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	315, 361, 487
Bsp143I	GATC	4 cut(s)	22, 412, 472, 598
BspCNI	CTCAG	4 cut(s)	151, 327, 376, 658
BspHI	TCATGA	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	702
BsrDI	GCAATG	1 cut(s)	25
BssMI	GATC	4 cut(s)	22, 412, 472, 598
Bst4CI	ACNGT	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstDEI	CTNAG	4 cut(s)	138, 314, 363, 645
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	4 cut(s)	25, 415, 475, 601
BstMBI	GATC	4 cut(s)	22, 412, 472, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 747
BstSFI	CTRYAG	1 cut(s)	698
BstSLI	GKGCMC	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	464, 651
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	239
CviAII	CATG	4 cut(s)	497, 607, 754, 786
CviJI	RGCY	6 cut(s)	134, 142, 211, 313, 437, 695
CviKI_1	RGCY	6 cut(s)	134, 142, 211, 313, 437, 695
DdeI	CTNAG	4 cut(s)	138, 314, 363, 645
DpnI	GATC	4 cut(s)	24, 414, 474, 600
DpnII	GATC	4 cut(s)	22, 412, 472, 598
DraI	TTTAAA	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	4 cut(s)	500, 610, 757, 789
FatI	CATG	4 cut(s)	496, 606, 753, 785
FbaI	TGATCA	2 cut(s)	412, 472
FblI	GTMKAC	1 cut(s)	544
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	26, 551
FspI	TGCGCA	1 cut(s)	238
GlaI	GCGC	1 cut(s)	238
GsaI	CCCAGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	500, 610, 757, 789
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	5 cut(s)	226, 251, 394, 519, 781
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	485, 545
Hpy188I	TCNGA	4 cut(s)	273, 317, 366, 648
Hpy188III	TCNNGA	6 cut(s)	32, 398, 497, 551, 665, 722
Hpy8I	GTNNAC	2 cut(s)	485, 545
HpyAV	CCTTC	2 cut(s)	169, 740
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	18, 191, 427, 485, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 747
HpyF3I	CTNAG	4 cut(s)	138, 314, 363, 645
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	4 cut(s)	500, 610, 757, 789
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	2 cut(s)	412, 472
Kzo9I	GATC	4 cut(s)	22, 412, 472, 598
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	221, 401, 483, 496, 607, 650
LweI	GCATC	2 cut(s)	286, 357
MaeI	CTAG	2 cut(s)	26, 551
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	731, 764
MalI	GATC	4 cut(s)	24, 414, 474, 600
MboI	GATC	4 cut(s)	22, 412, 472, 598
MboII	GAAGA	3 cut(s)	43, 195, 685
MhlI	GDGCHC	3 cut(s)	315, 361, 487
MluCI	AATT	4 cut(s)	320, 344, 388, 442
MlyI	GAGTC	2 cut(s)	260, 388
MnlI	CCTC	5 cut(s)	57, 121, 372, 518, 639
MroXI	GAANNNNTTC	2 cut(s)	660, 780
MseI	TTAA	6 cut(s)	12, 42, 182, 342, 441, 790
MslI	CAYNNNNRTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	197, 747
NdeII	GATC	4 cut(s)	22, 412, 472, 598
NlaIII	CATG	4 cut(s)	500, 610, 757, 789
NmuCI	GTSAC	1 cut(s)	764
NsbI	TGCGCA	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	1 cut(s)	496
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	2 cut(s)	660, 780
PfeI	GAWTC	3 cut(s)	226, 519, 781
PleI	GAGTC	2 cut(s)	259, 388
PpsI	GAGTC	2 cut(s)	259, 388
Psp124BI	GAGCTC	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	702
PstNI	CAGNNNCTG	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	543
SaqAI	TTAA	6 cut(s)	12, 42, 182, 342, 441, 790
Sau3AI	GATC	4 cut(s)	22, 412, 472, 598
SchI	GAGTC	2 cut(s)	260, 388
SduI	GDGCHC	3 cut(s)	315, 361, 487
SetI	ASST	9 cut(s)	136, 213, 236, 315, 420, 439, 494, 682, 697
SfaNI	GCATC	2 cut(s)	286, 357
SfcI	CTRYAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	248, 396
SmoI	CTYRAG	2 cut(s)	248, 396
Sse9I	AATT	4 cut(s)	320, 344, 388, 442
SspMI	CTAG	2 cut(s)	26, 551
SstI	GAGCTC	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	3 cut(s)	33, 544, 721
TasI	AATT	4 cut(s)	320, 344, 388, 442
TfiI	GAWTC	3 cut(s)	226, 519, 781
Tru1I	TTAA	6 cut(s)	12, 42, 182, 342, 441, 790
Tru9I	TTAA	6 cut(s)	12, 42, 182, 342, 441, 790
TscAI	CASTG	2 cut(s)	471, 658
TseFI	GTSAC	1 cut(s)	764
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	471, 658
VneI	GTGCAC	1 cut(s)	483
XapI	RAATTY	3 cut(s)	320, 344, 388
XbaI	TCTAGA	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	660, 780
XspI	CTAG	2 cut(s)	26, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.