FvH4_2g27295

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003552
Physical Location & Seq
Reverse (-)
21711369 .. 21712218
850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27295.t1

Sequence Viewer

Length: 396 bp
ATGAGGAAGCTTCTGGATGTGATTCTCCGTAATATTGTGAAGGAGGGAACGGATACAGCCTCTACTTCTTCTCAGAGTGCAGTTTCTGTGATCCAAACATGCGTAGAAAAGCTGGAACCCTTAGTTTGTGCCTTTTTGACATCTTGGTTTTTAGACAGAGATGCCATGGGGAGTGAGCTCAAGGAATTTTACCATGAAATCATTTTCAGAAGTTTTGAATGTGCTCCTCAGATGCTTTTTGCTGTCATCCCTAATTTAACTCAAGAGTTGCTGATTGATCAAGTCGGTGTCCGAATAAGAGCTGTTAAGCTGATTGGAAAACTCTTTACACTGCCTGAATACCATATATCACGAAAATATGAGGACCTCTTCAAAGAGTATCTAAAAAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.19

Weight (kDa)

6.73

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 3 - 131 8.3e-33 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 185
AgsI TTSAA 2 cut(s) 218, 373
AluBI AGCT 5 cut(s) 10, 112, 178, 302, 310
AluI AGCT 5 cut(s) 10, 112, 178, 302, 310
Alw21I GWGCWC 2 cut(s) 180, 226
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 86
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 364
AvaII GGWCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 180, 226
BciVI GTATCC 1 cut(s) 46
BclI TGATCA 1 cut(s) 277
BfuI GTATCC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 364
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 2 cut(s) 151, 222
BpuEI CTTGAG 2 cut(s) 164, 246
BsaJI CCNNGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 22, 246
BseMII CTCAG 2 cut(s) 86, 242
BseRI GAGGAG 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 180, 226
Bsp1286I GDGCHC 2 cut(s) 180, 226
Bsp143I GATC 2 cut(s) 90, 277
Bsp19I CCATGG 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 85, 241
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 90, 277
BssT1I CCWWGG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 72, 121, 228
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 2 cut(s) 22, 246
BstKTI GATC 2 cut(s) 93, 280
BstMBI GATC 2 cut(s) 90, 277
BstNSI RCATGY 1 cut(s) 102
BsuI GTATCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 2 cut(s) 22, 246
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 364
CviAII CATG 3 cut(s) 99, 166, 194
CviJI RGCY 6 cut(s) 10, 59, 112, 178, 302, 310
CviKI_1 RGCY 6 cut(s) 10, 59, 112, 178, 302, 310
DdeI CTNAG 3 cut(s) 72, 121, 228
DpnI GATC 2 cut(s) 92, 279
DpnII GATC 2 cut(s) 90, 277
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 102, 169, 197
FaiI YATR 6 cut(s) 100, 167, 195, 345, 347, 360
FatI CATG 3 cut(s) 98, 165, 193
FbaI TGATCA 1 cut(s) 277
FokI GGATG 2 cut(s) 29, 233
FriOI GRGCYC 1 cut(s) 180
Hin1II CATG 3 cut(s) 102, 169, 197
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 75, 209, 231, 293
Hpy188III TCNNGA 3 cut(s) 14, 263, 351
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 72, 121, 228
Hsp92II CATG 3 cut(s) 102, 169, 197
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 90, 277
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 98, 348
LweI GCATC 2 cut(s) 151, 222
MalI GATC 2 cut(s) 92, 279
MboI GATC 2 cut(s) 90, 277
MboII GAAGA 2 cut(s) 60, 361
MhlI GDGCHC 2 cut(s) 180, 226
MluCI AATT 2 cut(s) 185, 253
MnlI CCTC 5 cut(s) 37, 70, 237, 355, 377
MseI TTAA 3 cut(s) 257, 306, 394
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 90, 277
NlaIII CATG 3 cut(s) 102, 169, 197
NlaIV GGNNCC 1 cut(s) 117
NspI RCATGY 1 cut(s) 102
PfeI GAWTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 364
PspPPI RGGWCCY 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 257, 306, 394
Sau3AI GATC 2 cut(s) 90, 277
Sau96I GGNCC 1 cut(s) 364
SduI GDGCHC 2 cut(s) 180, 226
SetI ASST 6 cut(s) 12, 114, 180, 304, 312, 369
SfaNI GCATC 2 cut(s) 151, 222
SinI GGWCC 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 179, 261
SmoI CTYRAG 2 cut(s) 179, 261
Sse9I AATT 2 cut(s) 185, 253
SspI AATATT 1 cut(s) 34
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 1 cut(s) 165
TasI AATT 2 cut(s) 185, 253
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 3 cut(s) 257, 306, 394
Tru9I TTAA 3 cut(s) 257, 306, 394
TscAI CASTG 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 2 cut(s) 17, 65
TspRI CASTG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.