RLG00000011776

Sister chromatid cohesion protein PDS5 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
12568259 .. 12580540
12282 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011776

Sequence Viewer

Length: 3876 bp
ATGGACGAGTCTGCCCTTCAACTCGTCGCCAAAATCGGCAACCAGCTCCGCCGTCAAACCCGTCCTAACAAGGACTCCGTCGTCAAATCGCTCCGAGAAGCTACAGTGGCTTTGGCAGAGCTAGAGCAGCCTTCAGGCTCCACAAAGAGGGAAGCCACCAGGAAACTAGAAGCGGCTATAGAGCCTCTGAAGGAAACCATTGTTAAAGGCCTGCTTCGGCATCGAGATAAGGATGTGAGGCTTTTAGTTGCCATCTGTGCCACTGAGATGATGAGACTCATGGCACCGGAACCGCCTTTTGAGGATAGAGATCTCAGAGATGTGTTTAAGCTTCTTGTGAGTGTGTTTGCGGAGCTAGGCGACACCGCAAACTCACTGTTTTCGAAGAGGGCTAAGATAGTGGAGATTGTTGCAAAGTTGAAGTGTTGTGTGATCATGTTGGACATTGACTGTAATGATGTTGTTCTCGACATGTTCAATACTTTCTTCTCTGTCGTGAGAGAAAATCATCAGCAGACTTTGATCAAGGATATTTTGTCTATAATGGCTGAGATACTAAATGAGGAAGCTTCTCACCCTCTTTTGGATGTGCTGCTCCGTAATCTTGTGAAGGAGGGAACAGATACAGCCTCTGCTTCTTCCCAGCTTGCAGTTTCTGTGATCCAAACCTGTGCAGAAAAGCTGGAAACCTTAGTTTGTGGCTTTTTGACATCTTGTATTTTAGATAGAGATGCTGTGGGGAGTGAGCTCAAGGAATTTTACCATGAAATCATTTTCAAAATTTTTGAGTGTGCTCCTCAGATGCTTCTTGCTGTCATCCCTAATTTAACTCAAGAGTTACTGACTGATCAGGTCGATGTCCGAATAAAAGCTGTTAAACTAATTGGAAAACTCTTTTCGCTGCCTGATCACCATATTTCACGAAAATATGATGACCTCTTCAAAGAGTTTCTGAAAAGATTCTCGGATAAGTCTGTGGAAGTTAGAGTTAGTGCTCTACAATGCGCTAGAGTTTGCTATGTAACCAATCCATCTGGGGAAGAATCACAAAAACTTCTATCTTCCCTTGAAGGTCGATTACGAGATTTCGATGATAAAGTGAGAACACAAGCAGTAATTGTTTCCTGTGATCTTGCCATGTCTAATCTGAGATACTTTCCTCCCAAACTAATATCTCAAACTACTGAGAGACTTCGGGACAAGAAGATACCTATTAGAAAGATGGCTCTGCAAAAGTTGATGGAAGTCTACCGGTATTACTGTAACAAATGTTCTGAAGGTTACATTGCAATAAGTGACCACTTTGAACAGATTCCATGTAAAATCTTGATGCTCTGCTATGATAAAGAGTGTAAGGAGTTCAGGTCCCAAAATATGGAGCTTGTTCTTGCAGAAGATTTATTCCCGGCTGTTCTTTCGATGGAAGAAAGGACAAGGCACTGGATCCATTTGTTTTCGGTTTTCACCCCTCTTCATTTGAAGGCTTTGAATGCTATTTTGTCTCAAAAACAAAGGTTGCAAAGCGAAATGCGAACTTACTTAGAGATAAGAAAGAAAGAGAAGGGAAATGATCCAGAAGACATGCAGAAGAGATATAAGAATTTGTTCTTGAAAATGGCAGTCTCTTTTGCAGACCCTTCCCATGCAGAAAAATGCTTTCATAAATTAAACCAAATGAAAGTTAATAACATTTTTGATTCGCTGGCTTTATTATTGGATGAAAGTAGAGATGCCCGGACAACCAGAGACAAATTTCTGCAGATCATTGGAGAGAAACATGAAGATTTTGAGTTTTTACAAACACTCTCCTCAAAATGCTCTTCTAACATATTCAGCTCAGAACACGTTCACTGTATTCTAGATTTTCTTTCCAGTAACACTACAGGAGACAAGCACCTTGAGGCTTCTTGTGTCCAACTCCTTCTGGCAATTACCAGCTTTTTCCCCACTCTCCTGAGAGGTTCCGAAACCCAATTTCAGATGTTACTACAGGGGAGCAACCCAATCAATGATAAGTTGCTTGAAGTGTTAGCCCAAGCCAGCAAGCATATATCAGTCAACCTTAGTGAAATCAATCCCTTTTTGGCGAGGGTCTGTCTGGAGGGGACTCGTTTGCAGGCAAAATATGCTGTTACAGCGATTGCTGCTTTATTTGATACTTCTAAGCAATTATCAAGTCTATGCAAGAAACTTGTGGAATCTCTAATTAGTGAGCAGAACATACCAACAGTGCTGCAGTCCTTGGGGTGTCTTGCACAGCATTCTGTTTCAACATTTGAAAGTCAAGCTGAAGAGATCACTCCTTATATATATCAGAATATTTTCCAAGTGGACTCTTCGGATTATATGAATTCATTTGATGATGCATCTGGTTGTAGCAACTCTTGCAAACTGAAGATATATGGGCTGAAAACACTAGTCAAGAGCTTCTTGCCACATGGTGGAACTCGCATCAAACGGCAAGTTAATGAACTCTGGGACATTTTGTCAACAATGTTGCTAAAGGGCGAAACAGTTGATAGCATTACCTCAGGTGAAAGTGATAAGGCTTGTCAGCCTTGTATAAGATTAGCTGCTGCAAAGTCTGTTCTCCGGCTTTCTCGAAAATGGGATTTCCATATTTCTCCAGAGATATTTCGCCTTACAATTTCAATGGCAAAGGATGACTCTCCTTTGGTTAGAAGATTATTTCTGGATAAAATGCACAAACTGCTGAAGGGGCATGCTATACCTAGCAGATACGCATGTGCTTTTGCAATGGCCACCTCAGATTGCCTCAAGGATCTCCAAGATGATTCATTCAAATATATGACAGAATTTATCAAGGATTACTGTAGAGAAGCTCAAGCGCATCAAATATCTGGAGCGCAAGAAGGATTAATGACTAGTTTTCCAGCATACATAGTGGTATTCTTGATCCATCTTCTCGCTCATGATAAGGATTTCCCCCATGAAGATTGTCAGGATGGAGAAATATATGCTCAGTTTTGCTATCCTCTGTTTGTTTTATTGCGGGAATTAGTCAATGCTAGTAATGGTGATGGTGCTCTGGGTATTCTCAAGGATTCTGTCTTGAATTTGATCTGCATTTTTCGTGCAATTAAGAAAGCTGAGGATGCCATTGATGTTGAAAAAACTTCTAGGCTGCACCTTCTAGCAGACATTGGACACTTTTTCGTGACGTCAACAAATCGTAATGGCCTCTCCTCATCAGATGGTCCTGGGCAAATTTTGCTACCTTCATCCTTATATAAATCTAATTCTAGGAGCCTTGCTCAATCATGTTTCGATGAGCACTTTGTCCGAAGAGTAGTTCATATGTTTAAATCTGATATCTCTTTGCCTTCAAGTACTCTTCCTAAAAGTGGGCAGAAGTGTCAAGGGAATAGCACAAAATCTAATGTTATTAAGAGTGACATGGGCACCAGTACAGGACATAGGCGAAAACGGGCTCTCTCTCCAAGTGCTCTTGGAGCAGATGGAAATGGGGCATCTAAAAAGTCTGAGATTAGTCTGGGGAAAGAAGTAGTTTCATCTTGTGATTCTGTAGCTACAGAATCATCTCTGGATGATCTGAATGTGAAAAGAAATACCACTATGACGAAAAATGTTAATGTGAATAGGAGCATCGATGAGGAACATTCCAATCATCTGAGTACATTTAAGATCACATGTGATAGTAGTGGGGATGTTCAGGTAGTATGCTTGGAAACTGATAGCGGGGAAACTTTAACTGATGGCTCGCTGAAGGGAAGGCCGAAACAGAACAAGAGGACGAAAGCTTCTGTGGAGACCTCAGTATCAGAAGTTCTTGATATGAATGACAATGCTGTTGCCAAAAGAACTCGACGACAAAAGAAACTAAATTATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1292

Amino Acids

145.18

Weight (kDa)

7.62

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 26 - 1085 9.3e-272 Sister chromatid cohesion protein PDS5 protein
HEAT_GCN1 PF23271 196 - 369 1e-06 Stalled ribosome sensor GCN1-like, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 3185
AccB1I GGYRCC 2 cut(s) 283, 3422
AccB7I CCANNNNNTGG 2 cut(s) 1375, 2441
AccI GTMKAC 1 cut(s) 1248
AciI CCGC 7 cut(s) 49, 173, 293, 350, 366, 3013, 3720
AclWI GGATC 6 cut(s) 655, 1438, 1451, 1565, 2790, 2911
AcoI YGGCCR 1 cut(s) 2760
AcsI RAATTY 8 cut(s) 755, 780, 1600, 1751, 2350, 2816, 3076, 3228
AcuI CTGAAG 7 cut(s) 117, 209, 1296, 2310, 2414, 2735, 3767
AcyI GRCGYC 1 cut(s) 3182
AdeI CACNNNGTG 1 cut(s) 2441
AfaI GTAC 3 cut(s) 3352, 3430, 3658
AfiI CCNNNNNNNGG 5 cut(s) 147, 583, 1375, 2441, 3365
AflIII ACRYGT 3 cut(s) 471, 1843, 3671
AgeI ACCGGT 1 cut(s) 1251
AhdI GACNNNNNGTC 1 cut(s) 2485
AhlI ACTAGT 2 cut(s) 2416, 2885
AjnI CCWGG 2 cut(s) 158, 3220
Alw21I GWGCWC 6 cut(s) 750, 796, 997, 3049, 3297, 3469
Alw26I GTCTC 7 cut(s) 268, 1183, 1506, 1627, 1740, 1881, 3785
AlwI GGATC 6 cut(s) 655, 1438, 1451, 1565, 2790, 2911
AlwNI CAGNNNCTG 2 cut(s) 632, 656
AoxI GGCC 4 cut(s) 208, 2760, 3199, 3755
ApeKI GCWGC 8 cut(s) 127, 592, 901, 2144, 2233, 2573, 2576, 3145
ApoI RAATTY 8 cut(s) 755, 780, 1600, 1751, 2350, 2816, 3076, 3228
AseI ATTAAT 1 cut(s) 2879
AsiGI ACCGGT 1 cut(s) 1251
Asp700I GAANNNNTTC 5 cut(s) 959, 1311, 1604, 1845, 2321
AspLEI GCGC 3 cut(s) 1007, 2851, 2869
AspS9I GGNCC 2 cut(s) 1365, 3218
AsuC2I CCSGG 2 cut(s) 1406, 1735
AsuHPI GGTGA 5 cut(s) 566, 902, 1456, 2546, 3050
AsuII TTCGAA 1 cut(s) 383
AvaII GGWCC 2 cut(s) 1365, 3218
AxyI CCTNAGG 1 cut(s) 2530
BaeGI GKGCMC 1 cut(s) 3425
BaeI ACNNNNGTAYC 4 cut(s) 2731, 2764, 3783, 3816
BalI TGGCCA 1 cut(s) 2762
BamHI GGATCC 1 cut(s) 1443
BanI GGYRCC 2 cut(s) 283, 3422
BanII GRGCYC 2 cut(s) 750, 3454
BarI GAAGNNNNNNTAC 2 cut(s) 1062, 1094
BbsI GAAGAC 1 cut(s) 1584
Bbv12I GWGCWC 6 cut(s) 750, 796, 997, 3049, 3297, 3469
BbvCI CCTCAGC 1 cut(s) 3111
BbvI GCAGC 8 cut(s) 139, 579, 888, 2131, 2220, 2560, 2563, 3132
BceAI ACGGC 2 cut(s) 36, 2474
BciT130I CCWGG 2 cut(s) 160, 3222
BclI TGATCA 4 cut(s) 432, 522, 847, 907
BcnI CCSGG 2 cut(s) 1406, 1735
BcoDI GTCTC 7 cut(s) 268, 1183, 1506, 1627, 1740, 1881, 3785
BcuI ACTAGT 2 cut(s) 2416, 2885
BfmI CTRYAG 9 cut(s) 102, 177, 1757, 1881, 1988, 2234, 2833, 3546, 3552
BglII AGATCT 1 cut(s) 310
BisI GCNGC 9 cut(s) 128, 174, 593, 902, 2145, 2234, 2574, 2577, 3146
BlsI GCNGC 9 cut(s) 129, 175, 594, 903, 2146, 2235, 2575, 2578, 3147
BmcAI AGTACT 1 cut(s) 3352
Bme1390I CCNGG 4 cut(s) 160, 1406, 1735, 3222
Bme18I GGWCC 2 cut(s) 1365, 3218
BmeRI GACNNNNNGTC 1 cut(s) 2485
BmgT120I GGNCC 2 cut(s) 1365, 3218
BmiI GGNNCC 8 cut(s) 139, 285, 291, 1367, 1445, 1963, 3269, 3424
BmrFI CCNGG 4 cut(s) 160, 1406, 1735, 3222
BpiI GAAGAC 1 cut(s) 1584
BplI GAGNNNNNCTC 2 cut(s) 3259, 3291
BpmI CTGGAG 3 cut(s) 2120, 2610, 2883
Bpu10I CCTNAGC 1 cut(s) 3111
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 6 cut(s) 734, 816, 1919, 2762, 2829, 3044
BpuMI CCSGG 2 cut(s) 1406, 1735
Bsa29I ATCGAT 1 cut(s) 3630
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 3182
BsaI GGTCTC 1 cut(s) 3785
BsaJI CCNNGG 2 cut(s) 2241, 3221
BsaWI WCCGGW 2 cut(s) 286, 1251
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 1349, 1379
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 583, 1375, 2441, 3365
Bse118I RCCGGY 1 cut(s) 1251
Bse1I ACTGG 3 cut(s) 1445, 1872, 3426
Bse21I CCTNAGG 1 cut(s) 2530
Bse3DI GCAATG 2 cut(s) 1284, 2763
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 160, 3222
BseCI ATCGAT 1 cut(s) 3630
BseDI CCNNGG 2 cut(s) 2241, 3221
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 5 cut(s) 147, 583, 1375, 2441, 3365
BseMI GCAATG 2 cut(s) 1284, 2763
BseNI ACTGG 3 cut(s) 1445, 1872, 3426
BseRI GAGGAG 3 cut(s) 786, 1798, 3196
BseSI GKGCMC 1 cut(s) 3425
BseXI GCAGC 8 cut(s) 139, 579, 888, 2131, 2220, 2560, 2563, 3132
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 2 cut(s) 693, 3131
BshFI GGCC 4 cut(s) 210, 2762, 3201, 3757
BshNI GGYRCC 2 cut(s) 283, 3422
BshTI ACCGGT 1 cut(s) 1251
BshVI ATCGAT 1 cut(s) 3630
BsiHKAI GWGCWC 6 cut(s) 750, 796, 997, 3049, 3297, 3469
BsiSI CCGG 5 cut(s) 287, 1252, 1406, 1735, 2593
BslFI GGGAC 4 cut(s) 1211, 1351, 2119, 2492
BslI CCNNNNNNNGG 5 cut(s) 147, 583, 1375, 2441, 3365
BsmAI GTCTC 7 cut(s) 268, 1183, 1506, 1627, 1740, 1881, 3785
BsmFI GGGAC 4 cut(s) 1211, 1351, 2119, 2492
BsmI GAATGC 2 cut(s) 1495, 2260
BsnI GGCC 4 cut(s) 210, 2762, 3201, 3757
Bso31I GGTCTC 1 cut(s) 3785
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 8 cut(s) 750, 796, 997, 3049, 3297, 3425, 3454, 3469
BspACI CCGC 7 cut(s) 49, 173, 293, 350, 366, 3013, 3720
BspANI GGCC 4 cut(s) 210, 2762, 3201, 3757
BspDI ATCGAT 1 cut(s) 3630
BspHI TCATGA 1 cut(s) 2932
BspLI GGNNCC 8 cut(s) 139, 285, 291, 1367, 1445, 1963, 3269, 3424
BspMAI CTGCAG 2 cut(s) 1761, 2238
BspPI GGATC 6 cut(s) 655, 1438, 1451, 1565, 2790, 2911
BspQI GCTCTTC 1 cut(s) 1825
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 2 cut(s) 283, 3422
BspTNI GGTCTC 1 cut(s) 3785
BsrDI GCAATG 2 cut(s) 1284, 2763
BsrFI RCCGGY 1 cut(s) 1251
BsrI ACTGG 3 cut(s) 1445, 1872, 3426
BssAI RCCGGY 1 cut(s) 1251
BssECI CCNNGG 2 cut(s) 2241, 3221
BssNI GRCGYC 1 cut(s) 3182
BssT1I CCWWGG 1 cut(s) 2241
Bst2UI CCWGG 2 cut(s) 160, 3222
Bst4CI ACNGT 8 cut(s) 106, 378, 452, 1262, 1853, 2230, 2515, 2834
Bst6I CTCTTC 9 cut(s) 380, 944, 1476, 1583, 1825, 2286, 2341, 3301, 3360
BstACI GRCGYC 1 cut(s) 3182
BstAPI GCANNNNNTGC 4 cut(s) 2126, 2385, 2710, 3232
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 8 cut(s) 212, 648, 1704, 2041, 2045, 2118, 2724, 3743
BstHHI GCGC 3 cut(s) 1007, 2851, 2869
BstMAI GTCTC 7 cut(s) 268, 1183, 1506, 1627, 1740, 1881, 3785
BstNI CCWGG 2 cut(s) 160, 3222
BstNSI RCATGY 5 cut(s) 475, 1585, 2726, 2748, 3675
BstSCI CCNGG 4 cut(s) 158, 1404, 1733, 3220
BstSFI CTRYAG 9 cut(s) 102, 177, 1757, 1881, 1988, 2234, 2833, 3546, 3552
BstSLI GKGCMC 1 cut(s) 3425
BstV1I GCAGC 8 cut(s) 139, 579, 888, 2131, 2220, 2560, 2563, 3132
BstV2I GAAGAC 1 cut(s) 1584
BstX2I RGATCY 3 cut(s) 310, 1443, 2782
BstYI RGATCY 3 cut(s) 310, 1443, 2782
Bsu15I ATCGAT 1 cut(s) 3630
Bsu36I CCTNAGG 1 cut(s) 2530
BsuRI GGCC 4 cut(s) 210, 2762, 3201, 3757
BsuTUI ATCGAT 1 cut(s) 3630
BtsIMutI CAGTG 6 cut(s) 111, 261, 374, 1438, 1849, 2235
Cac8I GCNNGC 8 cut(s) 212, 648, 1704, 2041, 2045, 2118, 2724, 3743
CaiI CAGNNNCTG 2 cut(s) 632, 656
CciI TCATGA 1 cut(s) 2932
CfoI GCGC 3 cut(s) 1007, 2851, 2869
Cfr10I RCCGGY 1 cut(s) 1251
Cfr13I GGNCC 2 cut(s) 1365, 3218
ClaI ATCGAT 1 cut(s) 3630
Csp6I GTAC 3 cut(s) 3351, 3429, 3657
CspAI ACCGGT 1 cut(s) 1251
CviQI GTAC 3 cut(s) 3351, 3429, 3657
DraI TTTAAA 1 cut(s) 3325
DraIII CACNNNGTG 1 cut(s) 2441
DrdI GACNNNNNNGTC 1 cut(s) 80
DriI GACNNNNNGTC 1 cut(s) 2485
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 2760
Eam1104I CTCTTC 9 cut(s) 380, 944, 1476, 1583, 1825, 2286, 2341, 3301, 3360
Eam1105I GACNNNNNGTC 1 cut(s) 2485
EarI CTCTTC 9 cut(s) 380, 944, 1476, 1583, 1825, 2286, 2341, 3301, 3360
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 748
Eco130I CCWWGG 1 cut(s) 2241
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 750, 3454
Eco31I GGTCTC 1 cut(s) 3785
Eco32I GATATC 1 cut(s) 3334
Eco47I GGWCC 2 cut(s) 1365, 3218
Eco53kI GAGCTC 1 cut(s) 748
Eco57I CTGAAG 7 cut(s) 117, 209, 1296, 2310, 2414, 2735, 3767
Eco81I CCTNAGG 1 cut(s) 2530
EcoICRI GAGCTC 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 1365
EcoRI GAATTC 1 cut(s) 2350
EcoRII CCWGG 2 cut(s) 158, 3220
EcoRV GATATC 1 cut(s) 3334
EcoT14I CCWWGG 1 cut(s) 2241
EcoT22I ATGCAT 1 cut(s) 2368
EcoT38I GRGCYC 2 cut(s) 750, 3454
ErhI CCWWGG 1 cut(s) 2241
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 2414, 2446
FaqI GGGAC 4 cut(s) 1211, 1351, 2119, 2492
FauI CCCGC 2 cut(s) 3006, 3713
FauNDI CATATG 1 cut(s) 3318
FbaI TGATCA 4 cut(s) 432, 522, 847, 907
FblI GTMKAC 1 cut(s) 1248
Fnu4HI GCNGC 9 cut(s) 128, 174, 593, 902, 2145, 2234, 2574, 2577, 3146
FriOI GRGCYC 2 cut(s) 750, 3454
Fsp4HI GCNGC 9 cut(s) 128, 174, 593, 902, 2145, 2234, 2574, 2577, 3146
GlaI GCGC 3 cut(s) 1006, 2850, 2868
GluI GCNGC 9 cut(s) 128, 174, 593, 902, 2145, 2234, 2574, 2577, 3146
GsaI CCCAGC 1 cut(s) 646
GsuI CTGGAG 3 cut(s) 2120, 2610, 2883
HaeIII GGCC 4 cut(s) 210, 2762, 3201, 3757
HapII CCGG 5 cut(s) 287, 1252, 1406, 1735, 2593
HhaI GCGC 3 cut(s) 1007, 2851, 2869
Hin1I GRCGYC 1 cut(s) 3182
Hin6I GCGC 3 cut(s) 1005, 2849, 2867
HinP1I GCGC 3 cut(s) 1005, 2849, 2867
HincII GTYRAC 3 cut(s) 2059, 2490, 3186
HindII GTYRAC 3 cut(s) 2059, 2490, 3186
HindIII AAGCTT 3 cut(s) 329, 567, 3780
HpaII CCGG 5 cut(s) 287, 1252, 1406, 1735, 2593
HphI GGTGA 5 cut(s) 566, 902, 1456, 2546, 3050
Hpy166II GTNNAC 6 cut(s) 1249, 1849, 2059, 2332, 2490, 3186
Hpy8I GTNNAC 6 cut(s) 1249, 1849, 2059, 2332, 2490, 3186
Hpy99I CGWCG 3 cut(s) 29, 83, 3852
HpyCH4III ACNGT 8 cut(s) 106, 378, 452, 1262, 1853, 2230, 2515, 2834
HpyCH4IV ACGT 2 cut(s) 1845, 3182
HpySE526I ACGT 2 cut(s) 1845, 3182
Hsp92I GRCGYC 1 cut(s) 3182
HspAI GCGC 3 cut(s) 1005, 2849, 2867
Ksp22I TGATCA 4 cut(s) 432, 522, 847, 907
LguI GCTCTTC 1 cut(s) 1825
Lsp1109I GCAGC 8 cut(s) 139, 579, 888, 2131, 2220, 2560, 2563, 3132
MaeII ACGT 2 cut(s) 1845, 3182
MflI RGATCY 3 cut(s) 310, 1443, 2782
MhlI GDGCHC 8 cut(s) 750, 796, 997, 3049, 3297, 3425, 3454, 3469
MlsI TGGCCA 1 cut(s) 2762
MluNI TGGCCA 1 cut(s) 2762
MlyI GAGTC 6 cut(s) 17, 68, 270, 2101, 2327, 2660
MmeI TCCRAC 2 cut(s) 420, 1939
Mox20I TGGCCA 1 cut(s) 2762
Mph1103I ATGCAT 1 cut(s) 2368
MroXI GAANNNNTTC 5 cut(s) 959, 1311, 1604, 1845, 2321
MscI TGGCCA 1 cut(s) 2762
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 2762
MspI CCGG 5 cut(s) 287, 1252, 1406, 1735, 2593
MspR9I CCNGG 4 cut(s) 160, 1406, 1735, 3222
Mva1269I GAATGC 2 cut(s) 1495, 2260
MvaI CCWGG 2 cut(s) 160, 3222
NciI CCSGG 2 cut(s) 1406, 1735
NdeI CATATG 1 cut(s) 3318
NlaIV GGNNCC 8 cut(s) 139, 285, 291, 1367, 1445, 1963, 3269, 3424
NmuCI GTSAC 3 cut(s) 1295, 3178, 3413
NsiI ATGCAT 1 cut(s) 2368
NspI RCATGY 5 cut(s) 475, 1585, 2726, 2748, 3675
NspV TTCGAA 1 cut(s) 383
PaeI GCATGC 1 cut(s) 2726
PagI TCATGA 1 cut(s) 2932
PceI AGGCCT 1 cut(s) 210
PciI ACATGT 2 cut(s) 471, 3671
PciSI GCTCTTC 1 cut(s) 1825
PctI GAATGC 2 cut(s) 1495, 2260
PdmI GAANNNNTTC 5 cut(s) 959, 1311, 1604, 1845, 2321
PfeI GAWTC 9 cut(s) 960, 1043, 1312, 1697, 2198, 2795, 3065, 3542, 3557
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 2 cut(s) 1375, 2441
PinAI ACCGGT 1 cut(s) 1251
PkrI GCNGC 9 cut(s) 129, 175, 594, 903, 2146, 2235, 2575, 2578, 3147
PleI GAGTC 6 cut(s) 16, 68, 270, 2101, 2327, 2660
PpsI GAGTC 6 cut(s) 16, 68, 270, 2101, 2327, 2660
PpuMI RGGWCCY 1 cut(s) 1365
PscI ACATGT 2 cut(s) 471, 3671
PshBI ATTAAT 1 cut(s) 2879
Psp124BI GAGCTC 1 cut(s) 750
Psp5II RGGWCCY 1 cut(s) 1365
Psp6I CCWGG 2 cut(s) 158, 3220
PspFI CCCAGC 1 cut(s) 642
PspGI CCWGG 2 cut(s) 158, 3220
PspN4I GGNNCC 8 cut(s) 139, 285, 291, 1367, 1445, 1963, 3269, 3424
PspPI GGNCC 2 cut(s) 1365, 3218
PspPPI RGGWCCY 1 cut(s) 1365
PsrI GAACNNNNNNTAC 4 cut(s) 1255, 1287, 3792, 3824
PstI CTGCAG 2 cut(s) 1761, 2238
PstNI CAGNNNCTG 2 cut(s) 632, 656
PsuI RGATCY 3 cut(s) 310, 1443, 2782
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 3 cut(s) 3352, 3430, 3658
RsaNI GTAC 3 cut(s) 3351, 3429, 3657
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 1825
SatI GCNGC 9 cut(s) 128, 174, 593, 902, 2145, 2234, 2574, 2577, 3146
Sau96I GGNCC 2 cut(s) 1365, 3218
ScaI AGTACT 1 cut(s) 3352
SchI GAGTC 6 cut(s) 17, 68, 270, 2101, 2327, 2660
ScrFI CCNGG 4 cut(s) 160, 1406, 1735, 3222
SduI GDGCHC 8 cut(s) 750, 796, 997, 3049, 3297, 3425, 3454, 3469
SfcI CTRYAG 9 cut(s) 102, 177, 1757, 1881, 1988, 2234, 2833, 3546, 3552
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 2 cut(s) 1365, 3218
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 6 cut(s) 749, 831, 1898, 2777, 2844, 3059
SmoI CTYRAG 6 cut(s) 749, 831, 1898, 2777, 2844, 3059
SpeI ACTAGT 2 cut(s) 2416, 2885
SphI GCATGC 1 cut(s) 2726
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 7 cut(s) 49, 173, 293, 350, 366, 3013, 3720
SspI AATATT 1 cut(s) 2320
SstI GAGCTC 1 cut(s) 750
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 4 cut(s) 158, 1404, 1733, 3220
StyI CCWWGG 1 cut(s) 2241
TaaI ACNGT 8 cut(s) 106, 378, 452, 1262, 1853, 2230, 2515, 2834
TaiI ACGT 2 cut(s) 1848, 3185
TatI WGTACW 3 cut(s) 3350, 3428, 3656
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 9 cut(s) 960, 1043, 1312, 1697, 2198, 2795, 3065, 3542, 3557
TscAI CASTG 6 cut(s) 111, 268, 381, 1445, 1856, 2235
TseFI GTSAC 3 cut(s) 1295, 3178, 3413
TseI GCWGC 8 cut(s) 127, 592, 901, 2144, 2233, 2573, 2576, 3145
Tsp45I GTSAC 3 cut(s) 1295, 3178, 3413
TspGWI ACGGA 2 cut(s) 67, 587
TspRI CASTG 6 cut(s) 111, 268, 381, 1445, 1856, 2235
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 2 cut(s) 1375, 2441
VpaK11BI GGWCC 2 cut(s) 1365, 3218
VspI ATTAAT 1 cut(s) 2879
XapI RAATTY 8 cut(s) 755, 780, 1600, 1751, 2350, 2816, 3076, 3228
XbaI TCTAGA 1 cut(s) 1858
XceI RCATGY 5 cut(s) 475, 1585, 2726, 2748, 3675
XmiI GTMKAC 1 cut(s) 1248
XmnI GAANNNNTTC 5 cut(s) 959, 1311, 1604, 1845, 2321
ZraI GACGTC 1 cut(s) 3183
ZrmI AGTACT 1 cut(s) 3352
Zsp2I ATGCAT 1 cut(s) 2368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.