Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Reverse (-)

17808988 .. 17812106

Gene Structure 3119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGTCTGAATTGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGACCATTTCCGAGCCCTCGCGAATGGCTTCCAGAGGTTGGATAAGATCAAGGATTCTAGTAGACAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAGGAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTCAAGTAAATAAGCAATTGAATGATGAGAAACAATCTATGATTAAGGAACTCAACTCTTATGTTGCACTAAGAAAAACGTACTTGAATACACTCGGCAACAAGAAAGTTGAACTTTTTGATACTGGAGCTGGAGTCAGCGGTGAACCCACAGCTGAAGAAAACGTCCAAATGGCTTCAACAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAAAGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGGTTGTGCATCAGACACTCGAAGTTGGCACTCAAACTGCATCTAACTTAAAGGGACAGACGGATCAAATGGGCCGCGTTGTAAACGACCTAGACACAATTCAGTTCTCTCTTAAGAAAGCTTCGCAGCTGGTGAAAGAGATAGGAAGACAGGTAGCTACAGATAAATGCATAATGGCGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCTCCAGCGCAATCGAGAAAGCTCTTGTACTTCAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

265

Amino Acids

29.89

Weight (kDa)

7.69

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	101 - 159	2.2e-06	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	103 - 177	4.9e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	2 cut(s)	77, 558
AciI	CCGC	2 cut(s)	363, 556
AclI	AACGTT	1 cut(s)	472
AclWI	GGATC	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	399, 772
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	305, 785
AfiI	CCNNNNNNNGG	2 cut(s)	31, 94
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	244, 310, 335, 402, 470
AjnI	CCWGG	2 cut(s)	459, 745
Alw26I	GTCTC	3 cut(s)	153, 446, 732
AlwI	GGATC	1 cut(s)	552
AoxI	GGCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	377, 625
BanII	GRGCYC	2 cut(s)	26, 73
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	197, 439
BcgI	CGANNNNNNTGC	4 cut(s)	115, 125, 149, 159
BciT130I	CCWGG	2 cut(s)	461, 747
BcoDI	GTCTC	3 cut(s)	153, 446, 732
BfaI	CTAG	3 cut(s)	114, 572, 752
BfmI	CTRYAG	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	2 cut(s)	556, 608
BlsI	GCNGC	2 cut(s)	557, 609
Bme1390I	CCNGG	2 cut(s)	461, 747
BmgT120I	GGNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	461, 747
BmsI	GCATC	3 cut(s)	418, 499, 530
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	3 cut(s)	369, 375, 744
BpuEI	CTTGAG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 94
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	461, 747
BseDI	CCNNGG	1 cut(s)	745
BseGI	GGATG	2 cut(s)	450, 741
BseLI	CCNNNNNNNGG	2 cut(s)	31, 94
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	2 cut(s)	213, 747
BseXI	GCAGC	1 cut(s)	619
Bsh1236I	CGCG	2 cut(s)	77, 558
BshFI	GGCC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	31, 94
BsmAI	GTCTC	3 cut(s)	153, 446, 732
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	26, 73
Bsp143I	GATC	4 cut(s)	102, 187, 544, 708
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	2 cut(s)	363, 556
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	77, 558
BspPI	GGATC	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	745
BssMI	GATC	4 cut(s)	102, 187, 544, 708
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	461, 747
Bst4CI	ACNGT	1 cut(s)	164
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	147, 293
BstF5I	GGATG	2 cut(s)	450, 741
BstFNI	CGCG	2 cut(s)	77, 558
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	4 cut(s)	105, 190, 547, 711
BstMAI	GTCTC	3 cut(s)	153, 446, 732
BstMBI	GATC	4 cut(s)	102, 187, 544, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	2 cut(s)	461, 747
BstSCI	CCNGG	2 cut(s)	459, 745
BstSFI	CTRYAG	1 cut(s)	639
BstUI	CGCG	2 cut(s)	77, 558
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	450, 741
BtuMI	TCGCGA	1 cut(s)	77
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	304, 784
CviQI	GTAC	2 cut(s)	304, 784
DdeI	CTNAG	2 cut(s)	147, 293
DpnI	GATC	4 cut(s)	104, 189, 546, 710
DpnII	GATC	4 cut(s)	102, 187, 544, 708
Eco24I	GRGCYC	2 cut(s)	26, 73
Eco57I	CTGAAG	2 cut(s)	399, 772
EcoRII	CCWGG	2 cut(s)	459, 745
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	2 cut(s)	26, 73
FaiI	YATR	5 cut(s)	263, 285, 653, 689, 695
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	556, 608
FokI	GGATG	2 cut(s)	457, 728
FriOI	GRGCYC	2 cut(s)	26, 73
Fsp4HI	GCNGC	2 cut(s)	556, 608
FspBI	CTAG	3 cut(s)	114, 572, 752
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	556, 608
GsuI	CTGGAG	3 cut(s)	369, 375, 744
HaeIII	GGCC	1 cut(s)	555
HhaI	GCGC	1 cut(s)	766
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	3 cut(s)	40, 110, 357
HphI	GGTGA	2 cut(s)	377, 625
Hpy166II	GTNNAC	5 cut(s)	119, 194, 368, 565, 715
Hpy188I	TCNGA	6 cut(s)	10, 68, 495, 672, 737, 791
Hpy188III	TCNNGA	5 cut(s)	76, 88, 191, 712, 771
Hpy8I	GTNNAC	5 cut(s)	119, 194, 368, 565, 715
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	3 cut(s)	302, 387, 472
HpyCH4V	TGCA	4 cut(s)	290, 490, 521, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	2 cut(s)	147, 293
HpySE526I	ACGT	3 cut(s)	302, 387, 472
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	764
Kzo9I	GATC	4 cut(s)	102, 187, 544, 708
LmnI	GCTCC	3 cut(s)	34, 350, 760
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	3 cut(s)	418, 499, 530
MaeI	CTAG	3 cut(s)	114, 572, 752
MaeII	ACGT	3 cut(s)	302, 387, 472
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	4 cut(s)	104, 189, 546, 710
MboI	GATC	4 cut(s)	102, 187, 544, 708
MboII	GAAGA	5 cut(s)	149, 163, 392, 639, 718
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	26, 73
MluCI	AATT	4 cut(s)	11, 217, 239, 579
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	36, 83, 84, 234, 768
Mph1103I	ATGCAT	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	4 cut(s)	177, 267, 530, 594
MspA1I	CMGCKG	3 cut(s)	363, 377, 610
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	2 cut(s)	461, 747
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	461, 747
MvnI	CGCG	2 cut(s)	77, 558
MwoI	GCNNNNNNNGC	1 cut(s)	761
NdeII	GATC	4 cut(s)	102, 187, 544, 708
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	40, 110
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	557, 609
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Psp1406I	AACGTT	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	459, 745
PspGI	CCWGG	2 cut(s)	459, 745
PspPI	GGNCC	1 cut(s)	553
PvuII	CAGCTG	2 cut(s)	377, 610
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	2 cut(s)	305, 785
RsaNI	GTAC	2 cut(s)	304, 784
SaqAI	TTAA	4 cut(s)	177, 267, 530, 594
SatI	GCNGC	2 cut(s)	556, 608
Sau3AI	GATC	4 cut(s)	102, 187, 544, 708
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	461, 747
SduI	GDGCHC	2 cut(s)	26, 73
SfaNI	GCATC	3 cut(s)	418, 499, 530
SfcI	CTRYAG	1 cut(s)	639
SmlI	CTYRAG	2 cut(s)	225, 593
SmoI	CTYRAG	2 cut(s)	225, 593
Sse9I	AATT	4 cut(s)	11, 217, 239, 579
SsiI	CCGC	2 cut(s)	363, 556
SspMI	CTAG	3 cut(s)	114, 572, 752
StyD4I	CCNGG	2 cut(s)	459, 745
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	3 cut(s)	305, 390, 475
TaqI	TCGA	5 cut(s)	135, 214, 426, 501, 770
TasI	AATT	4 cut(s)	11, 217, 239, 579
TatI	WGTACW	1 cut(s)	783
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	40, 110
Tru1I	TTAA	4 cut(s)	177, 267, 530, 594
Tru9I	TTAA	4 cut(s)	177, 267, 530, 594
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	3 cut(s)	44, 60, 557
Van91I	CCANNNNNTGG	1 cut(s)	94
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	3 cut(s)	114, 572, 752
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.