Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Reverse (-)

45345262 .. 45349845

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG279400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTAGTAACTTGCCGATGAGCCCTCAGTTGGAGCAGATCCATGGTGAAATCCACGACAATTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGACTCAAGTAGACAAAGTAAACAGCTTGAGGAACTTACAGGAAAGATGAGAGAATGTAAAAGATTGATTAAAGAGTTTGATCGTGAAATGAAGGATGAGGAGGGCCGAAATACTCCTGATGTGAATAAGCAACTCAATGATGAGAAGCAATCAATGATCAAGGAGCTGAATTCATATGTACAATTGAGAAAAACGTATATGAATAGCCTTGGTAACAAGAAAGTTGAACTCTTTGATATGGGAGCAGGAGTTAGTGAACCAACAGCTGATGACAATGTTCAAATGGCATCAGCTATGTCAAATCAAGAACTAATCAATTCTGGGACGAAAACAATGGACGAGACTGACCAGGTCATTGAACGGTCTAAAAAGGTTGTTCAACAGACGATTGAAGTTGGAACTCAAACTGCTGTTACCTTGAAGGGCCAAACCGATCAAATGGGCCGCATTGTCAATGAGCTGGACACAATTCAGTTCTCAATCAAGAAGGCCACCCAGCTTGTGAAAGAGATCGGTAGGCAGGTGGCAACAGATAAATGTATCATGCTTTTCCTTCTGCTTATAGTATGTGGTGTAATAGCAATTATTATTGTGAAGGTTGTTAACCCTAACAACAAGGACATCAGGGATATCCCTGGATTGGCACCACCAGCTGCAAGGAGGCTTTTGTCTGTGAGTACTGGGGAACAGTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

7.64

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	155 - 229	3.8e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	288, 787
AfiI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
AgsI	TTSAA	7 cut(s)	335, 389, 467, 488, 500, 529, 802
AjnI	CCWGG	2 cut(s)	456, 742
AluBI	AGCT	8 cut(s)	94, 133, 274, 374, 401, 568, 607, 761
AluI	AGCT	8 cut(s)	94, 133, 274, 374, 401, 568, 607, 761
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	211, 532, 550, 597
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	211, 532, 550
AsuHPI	GGTGA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	26, 73
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	458, 744
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	553, 762
BlsI	GCNGC	2 cut(s)	554, 763
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	458, 744
BmgT120I	GGNCC	3 cut(s)	211, 532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	2 cut(s)	458, 744
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	97, 155
BsaJI	CCNNGG	3 cut(s)	43, 316, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 94, 748
Bse1I	ACTGG	1 cut(s)	793
BseBI	CCWGG	2 cut(s)	458, 744
BseDI	CCNNGG	3 cut(s)	43, 316, 742
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	603
BshFI	GGCC	4 cut(s)	213, 534, 552, 599
BshNI	GGYRCC	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	213, 534, 552, 599
Bsp1286I	GDGCHC	2 cut(s)	26, 73
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	4 cut(s)	213, 534, 552, 599
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	3 cut(s)	43, 316, 742
BssMI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	2 cut(s)	458, 744
Bst4CI	ACNGT	2 cut(s)	471, 798
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	6 cut(s)	42, 105, 190, 267, 544, 621
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	458, 744
BstSCI	CCNGG	2 cut(s)	456, 742
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	213, 534, 552, 599
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	619
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	211, 532, 550
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	287, 786
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	2 cut(s)	44, 652
CviQI	GTAC	2 cut(s)	287, 786
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	6 cut(s)	41, 104, 189, 266, 543, 620
DpnII	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco24I	GRGCYC	2 cut(s)	26, 73
Eco32I	GATATC	1 cut(s)	739
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	456, 742
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT38I	GRGCYC	2 cut(s)	26, 73
ErhI	CCWWGG	2 cut(s)	43, 316
FaeI	CATG	2 cut(s)	47, 655
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	43, 651
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	553, 762
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	2 cut(s)	26, 73
Fsp4HI	GCNGC	2 cut(s)	553, 762
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	553, 762
GsaI	CCCAGC	1 cut(s)	607
HaeIII	GGCC	4 cut(s)	213, 534, 552, 599
Hin1II	CATG	2 cut(s)	47, 655
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	1 cut(s)	110
HpaI	GTTAAC	1 cut(s)	712
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	119, 128, 365, 712
Hpy188III	TCNNGA	5 cut(s)	88, 191, 224, 413, 592
Hpy8I	GTNNAC	4 cut(s)	119, 128, 365, 712
HpyAV	CCTTC	5 cut(s)	193, 523, 589, 671, 697
HpyCH4III	ACNGT	2 cut(s)	471, 798
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	47, 655
Ksp22I	TGATCA	1 cut(s)	264
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
LmnI	GCTCC	3 cut(s)	34, 271, 350
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	8, 320, 520
MalI	GATC	6 cut(s)	41, 104, 189, 266, 543, 620
MboI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	26, 73
MluCI	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	12, 484
MnlI	CCTC	6 cut(s)	36, 83, 130, 199, 202, 762
MseI	TTAA	2 cut(s)	177, 711
MspA1I	CMGCKG	2 cut(s)	374, 761
MspR9I	CCNGG	2 cut(s)	458, 744
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	2 cut(s)	458, 744
MwoI	GCNNNNNNNGC	1 cut(s)	758
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
PaqCI	CACCTGC	1 cut(s)	619
PflFI	GACNNNGTC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	554, 763
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	456, 742
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	456, 742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	3 cut(s)	211, 532, 550
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	458
PvuII	CAGCTG	2 cut(s)	374, 761
RsaI	GTAC	2 cut(s)	288, 787
RsaNI	GTAC	2 cut(s)	287, 786
SaqAI	TTAA	2 cut(s)	177, 711
SatI	GCNGC	2 cut(s)	553, 762
Sau3AI	GATC	6 cut(s)	39, 102, 187, 264, 541, 618
Sau96I	GGNCC	3 cut(s)	211, 532, 550
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	458, 744
SduI	GDGCHC	2 cut(s)	26, 73
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	112, 134
SmoI	CTYRAG	2 cut(s)	112, 134
Sse9I	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
SsiI	CCGC	1 cut(s)	553
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	456, 742
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	2 cut(s)	471, 798
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	67
TasI	AATT	6 cut(s)	61, 277, 290, 424, 576, 690
TatI	WGTACW	2 cut(s)	286, 785
TauI	GCSGC	1 cut(s)	555
Tru1I	TTAA	2 cut(s)	177, 711
Tru9I	TTAA	2 cut(s)	177, 711
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	3 cut(s)	212, 270, 323
Tth111I	GACNNNGTC	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.