Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Reverse (-)

24531116 .. 24535894

Gene Structure 4779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCACTAACTTGCCGATGAGTCCTCAGTTGGAGCAGATCCATGGCGAAATCCACGACAATTTTCGAGCTCTCGCAAATGGCTTCCAGAAGCTTGATAAGATCAAAGACTCCAATAGACAAAGTAAACAGCTGGAGGATCTTACAGGAAAGATGAGAGAATGTAAAAGATTGATCAAAGAGTTTGATCGCGAAATGAAGGATGAGGAGGGCCGAAATACTCCTGACGTGAATAAGCAACTCAATGAAGAGAAGCAATCAATGATCAAAGAGCTGAATTCATATGTACAGTTGAGAAAAACGTATATGAACAGCCTTGGAAACAAGAAGGTTGAACTCTTTGATATGGGAGCAGGAGTTAGTGAACCAACAGCTGATGACAATGTTCAAATGGCATCAACTATGTCAAATCAAGAACTGATCAATTCCGGGATGAAAACAATGGATGAGACGGACCAGGTCATTGAACGGTCTAAAAAGACTGTTCAACAGACAATCGAAGTGGGAACTCAAACTGCTGTTACCTTGAAGGGCCAAACTGACCAAATGGGCCGCATTGTCAATGAGCTGGACACAATTCAGTTCTCAATCAAGAAGGCCACCCAGCTTGTGAAAGAGATTGGCCGGCAGGTGGCAACAGATAAATGTATCATGCTTTTCCTTCTGCTTATTGTTTGTGGTGTAATAGCAATTATTATTGTGAAGGTTGTAAACCCGAACAACAAGGACATCAGGGACATCCCTGGATTGGCACCGCCAGCTGCAAGGAGGCTTTTGTCTCTGAGTACTCGGGTACAGTTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

269

Amino Acids

30.27

Weight (kDa)

8.64

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	155 - 229	3.5e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	751
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	553, 755
AclWI	GGATC	2 cut(s)	34, 147
AcoI	YGGCCR	2 cut(s)	3, 622
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	3 cut(s)	288, 787, 795
AfiI	CCNNNNNNNGG	2 cut(s)	631, 748
AgsI	TTSAA	6 cut(s)	335, 389, 467, 488, 529, 802
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	456, 742
AluBI	AGCT	8 cut(s)	71, 94, 133, 274, 374, 568, 607, 761
AluI	AGCT	8 cut(s)	71, 94, 133, 274, 374, 568, 607, 761
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	443, 783
AlwI	GGATC	2 cut(s)	34, 147
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	6 cut(s)	3, 211, 532, 550, 597, 622
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	211, 454, 532, 550
AsuC2I	CCSGG	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	789
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	458, 744
BclI	TGATCA	3 cut(s)	174, 264, 420
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	443, 783
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	553, 762
BlsI	GCNGC	2 cut(s)	554, 763
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	3 cut(s)	430, 458, 744
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	4 cut(s)	211, 454, 532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	3 cut(s)	430, 458, 744
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	43, 316, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 748
Bse118I	RCCGGY	1 cut(s)	624
BseBI	CCWGG	2 cut(s)	458, 744
BseDI	CCNNGG	3 cut(s)	43, 316, 742
BseGI	GGATG	4 cut(s)	208, 438, 451, 738
BseLI	CCNNNNNNNGG	2 cut(s)	631, 748
BseMII	CTCAG	2 cut(s)	41, 773
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	603
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	6 cut(s)	5, 213, 534, 552, 599, 624
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	789
BsiSI	CCGG	2 cut(s)	429, 625
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	631, 748
BsmAI	GTCTC	2 cut(s)	443, 783
BsmBI	CGTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	6 cut(s)	5, 213, 534, 552, 599, 624
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
Bsp19I	CCATGG	1 cut(s)	43
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	2 cut(s)	553, 755
BspANI	GGCC	6 cut(s)	5, 213, 534, 552, 599, 624
BspCNI	CTCAG	2 cut(s)	40, 774
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	2 cut(s)	34, 147
BspT107I	GGYRCC	1 cut(s)	751
BsrFI	RCCGGY	1 cut(s)	624
BsrGI	TGTACA	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	3 cut(s)	43, 316, 742
BssMI	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	2 cut(s)	458, 744
Bst4CI	ACNGT	4 cut(s)	291, 471, 484, 798
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	626, 759
BstDEI	CTNAG	2 cut(s)	27, 782
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	4 cut(s)	208, 438, 451, 738
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	7 cut(s)	42, 105, 142, 177, 190, 267, 423
BstMAI	GTCTC	2 cut(s)	443, 783
BstMBI	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	458, 744
BstSCI	CCNGG	3 cut(s)	428, 456, 742
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	2 cut(s)	39, 139
BstYI	RGATCY	2 cut(s)	39, 139
BsuRI	GGCC	6 cut(s)	5, 213, 534, 552, 599, 624
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	208, 438, 451, 738
BtuMI	TCGCGA	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	626, 759
Cfr10I	RCCGGY	1 cut(s)	624
Cfr13I	GGNCC	4 cut(s)	211, 454, 532, 550
CsiI	ACCWGGT	1 cut(s)	456
Csp6I	GTAC	3 cut(s)	287, 786, 794
CspCI	CAANNNNNGTGG	4 cut(s)	483, 518, 589, 624
CviAII	CATG	2 cut(s)	44, 652
CviQI	GTAC	3 cut(s)	287, 786, 794
DdeI	CTNAG	2 cut(s)	27, 782
DpnI	GATC	7 cut(s)	41, 104, 141, 176, 189, 266, 422
DpnII	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
EaeI	YGGCCR	2 cut(s)	3, 622
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	789
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	456, 742
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	2 cut(s)	43, 316
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	2 cut(s)	47, 655
FaiI	YATR	8 cut(s)	45, 283, 285, 306, 308, 347, 404, 653
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	43, 651
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	3 cut(s)	174, 264, 420
Fnu4HI	GCNGC	2 cut(s)	553, 762
FokI	GGATG	4 cut(s)	215, 445, 458, 725
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	553, 762
GluI	GCNGC	2 cut(s)	553, 762
GsaI	CCCAGC	1 cut(s)	607
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	6 cut(s)	5, 213, 534, 552, 599, 624
HapII	CCGG	2 cut(s)	429, 625
Hin1II	CATG	2 cut(s)	47, 655
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	22, 110
HpaII	CCGG	2 cut(s)	429, 625
Hpy166II	GTNNAC	3 cut(s)	128, 365, 712
Hpy188I	TCNGA	1 cut(s)	783
Hpy188III	TCNNGA	5 cut(s)	88, 191, 224, 413, 592
Hpy8I	GTNNAC	3 cut(s)	128, 365, 712
HpyAV	CCTTC	6 cut(s)	193, 322, 523, 589, 671, 697
HpyCH4III	ACNGT	4 cut(s)	291, 471, 484, 798
HpyCH4IV	ACGT	2 cut(s)	228, 302
HpyCH4V	TGCA	1 cut(s)	764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	2 cut(s)	27, 782
HpySE526I	ACGT	2 cut(s)	228, 302
Hsp92II	CATG	2 cut(s)	47, 655
KroI	GCCGGC	1 cut(s)	624
KroNI	GCCGGC	1 cut(s)	626
Ksp22I	TGATCA	3 cut(s)	174, 264, 420
Kzo9I	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
LmnI	GCTCC	2 cut(s)	34, 350
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	404
MabI	ACCWGGT	1 cut(s)	456
MaeII	ACGT	2 cut(s)	228, 302
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	7 cut(s)	41, 104, 141, 176, 189, 266, 422
MboI	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	2 cut(s)	39, 139
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	61, 277, 424, 576, 690
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	31, 104
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	36, 130, 199, 202, 762
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	133, 374, 761
MspI	CCGG	2 cut(s)	429, 625
MspR9I	CCNGG	3 cut(s)	430, 458, 744
MvaI	CCWGG	2 cut(s)	458, 744
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	758
NaeI	GCCGGC	1 cut(s)	626
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
NgoMIV	GCCGGC	1 cut(s)	624
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
NruI	TCGCGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	619
PdiI	GCCGGC	1 cut(s)	626
PflFI	GACNNNGTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	554, 763
PleI	GAGTC	2 cut(s)	30, 104
PpsI	GAGTC	2 cut(s)	30, 104
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	456, 742
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	456, 742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	4 cut(s)	211, 454, 532, 550
PsuI	RGATCY	2 cut(s)	39, 139
PsyI	GACNNNGTC	1 cut(s)	458
PvuII	CAGCTG	3 cut(s)	133, 374, 761
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	3 cut(s)	288, 787, 795
RsaNI	GTAC	3 cut(s)	287, 786, 794
SacI	GAGCTC	1 cut(s)	73
SatI	GCNGC	2 cut(s)	553, 762
Sau3AI	GATC	7 cut(s)	39, 102, 139, 174, 187, 264, 420
Sau96I	GGNCC	4 cut(s)	211, 454, 532, 550
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	2 cut(s)	31, 104
ScrFI	CCNGG	3 cut(s)	430, 458, 744
SduI	GDGCHC	1 cut(s)	73
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	404
SinI	GGWCC	1 cut(s)	454
Sse9I	AATT	5 cut(s)	61, 277, 424, 576, 690
SsiI	CCGC	2 cut(s)	553, 755
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	3 cut(s)	428, 456, 742
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	4 cut(s)	291, 471, 484, 798
TaiI	ACGT	2 cut(s)	231, 305
TaqI	TCGA	2 cut(s)	67, 498
TasI	AATT	5 cut(s)	61, 277, 424, 576, 690
TatI	WGTACW	2 cut(s)	286, 785
TauI	GCSGC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	5 cut(s)	212, 261, 270, 323, 449
TspGWI	ACGGA	1 cut(s)	467
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	1 cut(s)	277
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.