Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Forward (+)

8467871 .. 8471562

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12240.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCAGCAACTTACCGATGAGCCCTCCGTTGGAGCAGATCCATGGCGAAATCCACGACAATTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGACTCCAATAGACAAAGTAAACAGCTGGAGGAACTTACAGGAAAGATGAGGGAATGTAAAAGATTAATTAAAGAGTTTGATCGTGAAATCAAGGACGAGGAGAGCCGAAATCCTCCTGACGTGAATAAACAGCTTAATGATGAAAAGCAATCTATGATCAAAGAGCTGAATTCATATGTGCAATTGAGAAAAACGTATATGAATAGCCTTGGTAACAAGAAAGTCGAACTCTTTGATATGGGAGCAGGAGTTAGTGAACCCACTGCTGATGAGAATGTTCAAATGGCTTCAGCTATGTCAAATCAAGAACTAATCAATTCTGGGATGAAAACAATGGATGAGACTGATCAGGTCATTGAACGCTCTAAAAAGGTTGTTGAGCAAACAGTTGAAGTGGGAACTCAAACTGCTGTTACCTTAAAGGGCCAAACCGACCAAATGGGCCGCATTGTAAATGAGCTGGACACAATTCAGTTTTCAATTAAGAAGGCCTCTCAGCTTGTAAAGGAGATTGGTAGACAGGTGGCAACAGATAAATGCATCATGCTTTTTCTTTTGCTTATTGTAATTGGTGTAATAGCAATTATTGTTGTGAAGATTGTGAACCCCAGCAATAAAAACATAAGGGATATCCCTGGATTGGCGCCGCCTGCTGCAAGGAGGCTTTTGTCAATGAGTCCTCTGCAACAGTTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

269

Amino Acids

30.17

Weight (kDa)

6.79

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	625
AciI	CCGC	2 cut(s)	553, 755
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	752
AfiI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
AgsI	TTSAA	4 cut(s)	389, 467, 500, 588
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	7 cut(s)	94, 133, 241, 274, 401, 568, 607
AluI	AGCT	7 cut(s)	94, 133, 241, 274, 401, 568, 607
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	3, 532, 550, 597
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	2 cut(s)	532, 550
AsuII	TTCGAA	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	26, 73
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	2 cut(s)	264, 454
BcoDI	GTCTC	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	755
BisI	GCNGC	3 cut(s)	553, 755, 762
BlsI	GCNGC	3 cut(s)	554, 756, 763
Bme1390I	CCNGG	1 cut(s)	744
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	657
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	43, 316, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	3 cut(s)	43, 316, 742
BseGI	GGATG	2 cut(s)	438, 451
BseLI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseMII	CTCAG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	716
BshFI	GGCC	4 cut(s)	5, 534, 552, 599
BshNI	GGYRCC	1 cut(s)	751
BslI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	5, 534, 552, 599
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	26, 73
Bsp143I	GATC	5 cut(s)	39, 102, 187, 264, 454
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	553, 755
BspANI	GGCC	4 cut(s)	5, 534, 552, 599
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	751
BssECI	CCNNGG	3 cut(s)	43, 316, 742
BssMI	GATC	5 cut(s)	39, 102, 187, 264, 454
BssNI	GRCGYC	1 cut(s)	752
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	496, 798
BstACI	GRCGYC	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	7, 759
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	438, 451
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	754
BstKTI	GATC	5 cut(s)	42, 105, 190, 267, 457
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	5 cut(s)	39, 102, 187, 264, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	742
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	5, 534, 552, 599
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	438, 451
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	7, 759
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	532, 550
CviAII	CATG	2 cut(s)	44, 652
DdeI	CTNAG	1 cut(s)	603
DinI	GGCGCC	1 cut(s)	753
DpnI	GATC	5 cut(s)	41, 104, 189, 266, 456
DpnII	GATC	5 cut(s)	39, 102, 187, 264, 454
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	26, 73
Eco32I	GATATC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	2 cut(s)	26, 73
EgeI	GGCGCC	1 cut(s)	753
EheI	GGCGCC	1 cut(s)	753
ErhI	CCWWGG	2 cut(s)	43, 316
FaeI	CATG	2 cut(s)	47, 655
FatI	CATG	2 cut(s)	43, 651
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	2 cut(s)	264, 454
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	553, 755, 762
FokI	GGATG	2 cut(s)	445, 458
FriOI	GRGCYC	2 cut(s)	26, 73
Fsp4HI	GCNGC	3 cut(s)	553, 755, 762
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	3 cut(s)	553, 755, 762
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	4 cut(s)	5, 534, 552, 599
HhaI	GCGC	1 cut(s)	754
Hin1I	GRCGYC	1 cut(s)	752
Hin1II	CATG	2 cut(s)	47, 655
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HinfI	GANTC	2 cut(s)	110, 784
Hpy166II	GTNNAC	4 cut(s)	128, 365, 626, 712
Hpy188III	TCNNGA	4 cut(s)	88, 191, 224, 413
Hpy8I	GTNNAC	4 cut(s)	128, 365, 626, 712
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	2 cut(s)	496, 798
HpyCH4IV	ACGT	2 cut(s)	228, 302
HpyCH4V	TGCA	4 cut(s)	289, 648, 764, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	2 cut(s)	228, 302
Hsp92I	GRCGYC	1 cut(s)	752
Hsp92II	CATG	2 cut(s)	47, 655
HspAI	GCGC	1 cut(s)	752
KasI	GGCGCC	1 cut(s)	751
Ksp22I	TGATCA	2 cut(s)	264, 454
Kzo9I	GATC	5 cut(s)	39, 102, 187, 264, 454
LmnI	GCTCC	2 cut(s)	34, 350
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	657
MaeII	ACGT	2 cut(s)	228, 302
MaeIII	GTNAC	2 cut(s)	320, 520
MalI	GATC	5 cut(s)	41, 104, 189, 266, 456
MboI	GATC	5 cut(s)	39, 102, 187, 264, 454
MboII	GAAGA	1 cut(s)	715
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	26, 73
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	61, 174, 277, 290, 424, 576, 588, 675, 690
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	104, 793
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	9 cut(s)	36, 83, 130, 150, 199, 231, 610, 762, 798
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	173, 177, 243, 527, 591
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	744
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	1 cut(s)	758
NarI	GGCGCC	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	39, 102, 187, 264, 454
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	650
NspV	TTCGAA	1 cut(s)	801
PacI	TTAATTAA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	554, 756, 763
PleI	GAGTC	2 cut(s)	104, 792
PluTI	GGCGCC	1 cut(s)	755
PpsI	GAGTC	2 cut(s)	104, 792
PshBI	ATTAAT	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	532, 550
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	133
SaqAI	TTAA	5 cut(s)	173, 177, 243, 527, 591
SatI	GCNGC	3 cut(s)	553, 755, 762
Sau3AI	GATC	5 cut(s)	39, 102, 187, 264, 454
Sau96I	GGNCC	2 cut(s)	532, 550
SchI	GAGTC	2 cut(s)	104, 793
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	2 cut(s)	26, 73
SfaNI	GCATC	1 cut(s)	657
SfoI	GGCGCC	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	801
Sse9I	AATT	9 cut(s)	61, 174, 277, 290, 424, 576, 588, 675, 690
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	2 cut(s)	553, 755
SspDI	GGCGCC	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	2 cut(s)	496, 798
TaiI	ACGT	2 cut(s)	231, 305
TaqI	TCGA	3 cut(s)	67, 333, 801
TasI	AATT	9 cut(s)	61, 174, 277, 290, 424, 576, 588, 675, 690
TauI	GCSGC	2 cut(s)	555, 757
Tru1I	TTAA	5 cut(s)	173, 177, 243, 527, 591
Tru9I	TTAA	5 cut(s)	173, 177, 243, 527, 591
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	4 cut(s)	264, 270, 323, 449
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	173
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.