Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Reverse (-)

5969564 .. 5972572

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCTTCTAATCTCCCCATGAGCCCTCAATTGGAGCAGATCCATGGCGAAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATTAAGGATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGACAAGATGAGAGAGTGTAAAAGATTGGTCAAAGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAGTAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTGCTCTAAGAAAAACGTATATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTTGATATGGGAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTATGTCAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTGAGCGCTCAAAACAGGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATTTAAAGGGACAGACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCTCAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATAAATGCATAATGGGGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAATCGAGGAAGCTATTGTACTTGAGGAATCAAGACTACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

269

Amino Acids

30.41

Weight (kDa)

6.86

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	152 - 210	9.1e-07	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccII	CGCG	2 cut(s)	77, 558
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	2 cut(s)	34, 552
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	313, 785
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	31, 94
AflIII	ACRYGT	2 cut(s)	556, 804
AgsI	TTSAA	5 cut(s)	114, 137, 244, 392, 584
AjnI	CCWGG	2 cut(s)	414, 745
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	446, 622
AlwI	GGATC	2 cut(s)	34, 552
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	2 cut(s)	462, 600
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	2 cut(s)	83, 387
AspLEI	GCGC	2 cut(s)	474, 766
AsuHPI	GGTGA	1 cut(s)	625
BanII	GRGCYC	3 cut(s)	26, 73, 276
BarI	GAAGNNNNNNTAC	2 cut(s)	767, 799
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	533
BciT130I	CCWGG	2 cut(s)	416, 747
BclI	TGATCA	2 cut(s)	264, 457
BcoDI	GTCTC	2 cut(s)	446, 622
BfaI	CTAG	2 cut(s)	117, 213
BfmI	CTRYAG	2 cut(s)	372, 519
BfoI	RGCGCY	1 cut(s)	475
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	2 cut(s)	416, 747
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	2 cut(s)	416, 747
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	2 cut(s)	375, 744
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	182, 808
BsaJI	CCNNGG	3 cut(s)	43, 316, 745
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 94
BseBI	CCWGG	2 cut(s)	416, 747
BseDI	CCNNGG	3 cut(s)	43, 316, 745
BseGI	GGATG	3 cut(s)	208, 454, 741
BseLI	CCNNNNNNNGG	2 cut(s)	31, 94
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	1 cut(s)	533
BseYI	CCCAGC	1 cut(s)	606
Bsh1236I	CGCG	2 cut(s)	77, 558
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	464, 602
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	276
BslFI	GGGAC	3 cut(s)	549, 567, 752
BslI	CCNNNNNNNGG	2 cut(s)	31, 94
BsmAI	GTCTC	2 cut(s)	446, 622
BsmFI	GGGAC	3 cut(s)	549, 567, 752
BsnI	GGCC	2 cut(s)	464, 602
Bsp1286I	GDGCHC	3 cut(s)	26, 73, 276
Bsp143I	GATC	5 cut(s)	39, 264, 457, 544, 708
Bsp19I	CCATGG	1 cut(s)	43
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	2 cut(s)	464, 602
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	2 cut(s)	77, 558
BspLI	GGNNCC	1 cut(s)	662
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	2 cut(s)	34, 552
BssECI	CCNNGG	3 cut(s)	43, 316, 745
BssMI	GATC	5 cut(s)	39, 264, 457, 544, 708
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	2 cut(s)	416, 747
Bst4CI	ACNGT	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	293, 378
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	3 cut(s)	208, 454, 741
BstFNI	CGCG	2 cut(s)	77, 558
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	2 cut(s)	474, 766
BstKTI	GATC	5 cut(s)	42, 267, 460, 547, 711
BstMAI	GTCTC	2 cut(s)	446, 622
BstMBI	GATC	5 cut(s)	39, 264, 457, 544, 708
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	2 cut(s)	416, 747
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	2 cut(s)	414, 745
BstSFI	CTRYAG	2 cut(s)	372, 519
BstUI	CGCG	2 cut(s)	77, 558
BstV1I	GCAGC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	464, 602
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	208, 454, 741
BtuMI	TCGCGA	1 cut(s)	77
CfoI	GCGC	2 cut(s)	474, 766
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	312, 784
CviAII	CATG	3 cut(s)	19, 44, 805
CviQI	GTAC	2 cut(s)	312, 784
DdeI	CTNAG	2 cut(s)	293, 378
DpnI	GATC	5 cut(s)	41, 266, 459, 546, 710
DpnII	GATC	5 cut(s)	39, 264, 457, 544, 708
DraI	TTTAAA	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco147I	AGGCCT	1 cut(s)	602
Eco24I	GRGCYC	3 cut(s)	26, 73, 276
Eco47III	AGCGCT	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	414, 745
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	3 cut(s)	26, 73, 276
ErhI	CCWWGG	2 cut(s)	43, 316
FaeI	CATG	3 cut(s)	22, 47, 808
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	3 cut(s)	549, 567, 752
FatI	CATG	3 cut(s)	18, 43, 804
FbaI	TGATCA	2 cut(s)	264, 457
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	3 cut(s)	215, 461, 728
FriOI	GRGCYC	3 cut(s)	26, 73, 276
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	2 cut(s)	117, 213
GlaI	GCGC	2 cut(s)	473, 765
GluI	GCNGC	1 cut(s)	522
GsaI	CCCAGC	1 cut(s)	610
GsuI	CTGGAG	2 cut(s)	375, 744
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	464, 602
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	2 cut(s)	474, 766
Hin1II	CATG	3 cut(s)	22, 47, 808
Hin6I	GCGC	2 cut(s)	472, 764
HinP1I	GCGC	2 cut(s)	472, 764
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	110, 715, 793
HpaI	GTTAAC	1 cut(s)	565
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	194, 565
Hpy188I	TCNGA	2 cut(s)	68, 720
Hpy188III	TCNNGA	6 cut(s)	76, 88, 224, 595, 712, 797
Hpy8I	GTNNAC	2 cut(s)	194, 565
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	285, 302
HpyCH4V	TGCA	2 cut(s)	521, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	2 cut(s)	293, 378
HpySE526I	ACGT	2 cut(s)	285, 302
Hsp92II	CATG	3 cut(s)	22, 47, 808
HspAI	GCGC	2 cut(s)	472, 764
Ksp22I	TGATCA	2 cut(s)	264, 457
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	39, 264, 457, 544, 708
LmnI	GCTCC	5 cut(s)	34, 271, 350, 418, 760
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	2 cut(s)	117, 213
MaeII	ACGT	2 cut(s)	285, 302
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	5 cut(s)	41, 266, 459, 546, 710
MboI	GATC	5 cut(s)	39, 264, 457, 544, 708
MboII	GAAGA	2 cut(s)	149, 718
MfeI	CAATTG	2 cut(s)	29, 239
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	26, 73, 276
MluCI	AATT	6 cut(s)	29, 217, 239, 277, 526, 584
MluI	ACGCGT	1 cut(s)	556
MmeI	TCCRAC	2 cut(s)	75, 487
MnlI	CCTC	9 cut(s)	36, 83, 84, 199, 373, 613, 765, 768, 783
Mph1103I	ATGCAT	1 cut(s)	653
MroXI	GAANNNNTTC	2 cut(s)	83, 387
MseI	TTAA	3 cut(s)	105, 530, 564
MspA1I	CMGCKG	2 cut(s)	377, 610
MspR9I	CCNGG	2 cut(s)	416, 747
MunI	CAATTG	2 cut(s)	29, 239
MvaI	CCWGG	2 cut(s)	416, 747
MvnI	CGCG	2 cut(s)	77, 558
MwoI	GCNNNNNNNGC	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	5 cut(s)	39, 264, 457, 544, 708
NlaIII	CATG	3 cut(s)	22, 47, 808
NlaIV	GGNNCC	1 cut(s)	662
NmuCI	GTSAC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	653
NspI	RCATGY	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	602
PciI	ACATGT	1 cut(s)	804
PdmI	GAANNNNTTC	2 cut(s)	83, 387
PfeI	GAWTC	3 cut(s)	110, 715, 793
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	414, 745
PspFI	CCCAGC	1 cut(s)	606
PspGI	CCWGG	2 cut(s)	414, 745
PspN4I	GGNNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	2 cut(s)	377, 610
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	2 cut(s)	313, 785
RsaNI	GTAC	2 cut(s)	312, 784
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	105, 530, 564
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	5 cut(s)	39, 264, 457, 544, 708
ScrFI	CCNGG	2 cut(s)	416, 747
SduI	GDGCHC	3 cut(s)	26, 73, 276
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	2 cut(s)	372, 519
SmlI	CTYRAG	2 cut(s)	197, 787
SmoI	CTYRAG	2 cut(s)	197, 787
Sse9I	AATT	6 cut(s)	29, 217, 239, 277, 526, 584
SseBI	AGGCCT	1 cut(s)	602
SsiI	CCGC	1 cut(s)	681
SspMI	CTAG	2 cut(s)	117, 213
SstI	GAGCTC	1 cut(s)	276
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	2 cut(s)	414, 745
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	2 cut(s)	288, 305
TaqI	TCGA	3 cut(s)	186, 501, 770
TasI	AATT	6 cut(s)	29, 217, 239, 277, 526, 584
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	3 cut(s)	110, 715, 793
Tru1I	TTAA	3 cut(s)	105, 530, 564
Tru9I	TTAA	3 cut(s)	105, 530, 564
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	390, 452
TspGWI	ACGGA	2 cut(s)	44, 557
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	217
XceI	RCATGY	1 cut(s)	808
XmnI	GAANNNNTTC	2 cut(s)	83, 387
XspI	CTAG	2 cut(s)	117, 213
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.