Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Forward (+)

10893158 .. 10897574

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCAGCAACTTGCCGATGAGCCCGCAGTTGGAGCAGATCCATGGCGAAATCCACGACAATTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGACTCCAATAGACAAAGTAAACAGCTGGAGGAACTTACAGGAAAGATGAGGGAATGTAAAAGATTAATTAAAGAGTTTGATCGTGAAGTCAAGGACGAGGAGAGCCGAAATCCTCCTGACGTGAATAAACAGCTTAATGATGAAAAGCAATCTATGATCAAAGAGCTGAATTCATATGTGCAATTGAGAAAAACGTATATGAATAGCCTTGGTAACAAGAAAGTCGAACTCTTTGATATGGGAGCAGGAATTAGTGAACCCACTGCTGATGAGAATGTTCAAATGGCTTCAGCTATGTCAAATCAAGAACTAATCAATTCTGGGATGAAAACAATGGATGAGACTGATCAGGTCATTGAACGCTCTAAAAAGGTTGTTGAGCAAACAGTTGAAGTGGGAACTCAAACTGCTGTTACCTTAAAGGGCCAAACTGACCAAATGGGCCACATTGTAAATGAGCTGGACACAATTCAGTTTTCAATTAGGAAGGCCTCTCAGCTTGTAAAGGAGATTGGTAGACAGGTGGCAACAGATAAATGCATCATGCTTTTTCTTTTGCTTATTGTAATTGGTGTAATAGCAATTATTGTTGTGAAGATTGTGAACCCCAGCAATAAAAACATAAGGGATATCCCTGGATTGGCGCCGCCTGCTGCAAGGAGGCTTTTGTCAACGAGTCTTCTGCAACAGTTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

6.38

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec20	PF03908	155 - 235	5.5e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	625
AciI	CCGC	2 cut(s)	26, 755
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	752
AfiI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
AgsI	TTSAA	4 cut(s)	389, 467, 500, 588
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	7 cut(s)	94, 133, 241, 274, 401, 568, 607
AluI	AGCT	7 cut(s)	94, 133, 241, 274, 401, 568, 607
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	3, 532, 550, 597
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	2 cut(s)	532, 550
AsuII	TTCGAA	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	2 cut(s)	26, 73
BbsI	GAAGAC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	748
BcgI	CGANNNNNNTGC	2 cut(s)	772, 806
BciT130I	CCWGG	1 cut(s)	744
BclI	TGATCA	2 cut(s)	264, 454
BcoDI	GTCTC	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	755
BisI	GCNGC	2 cut(s)	755, 762
BlsI	GCNGC	2 cut(s)	756, 763
Bme1390I	CCNGG	1 cut(s)	744
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	801
BsaHI	GRCGYC	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	43, 316, 742
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseBI	CCWGG	1 cut(s)	744
BseDI	CCNNGG	3 cut(s)	43, 316, 742
BseGI	GGATG	2 cut(s)	438, 451
BseLI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BseMII	CTCAG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	716
BshFI	GGCC	4 cut(s)	5, 534, 552, 599
BshNI	GGYRCC	1 cut(s)	751
BslI	CCNNNNNNNGG	3 cut(s)	31, 94, 748
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	4 cut(s)	5, 534, 552, 599
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	26, 73
Bsp143I	GATC	5 cut(s)	39, 102, 187, 264, 454
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	2 cut(s)	26, 755
BspANI	GGCC	4 cut(s)	5, 534, 552, 599
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	751
BssECI	CCNNGG	3 cut(s)	43, 316, 742
BssMI	GATC	5 cut(s)	39, 102, 187, 264, 454
BssNI	GRCGYC	1 cut(s)	752
BssT1I	CCWWGG	2 cut(s)	43, 316
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	2 cut(s)	496, 798
BstACI	GRCGYC	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	3 cut(s)	7, 26, 759
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	438, 451
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	1 cut(s)	754
BstKTI	GATC	5 cut(s)	42, 105, 190, 267, 457
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	5 cut(s)	39, 102, 187, 264, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 758
BstNI	CCWGG	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	742
BstV1I	GCAGC	1 cut(s)	748
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	5, 534, 552, 599
BtgI	CCRYGG	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	438, 451
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	7, 26, 759
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	532, 550
CviAII	CATG	2 cut(s)	44, 652
DdeI	CTNAG	1 cut(s)	603
DinI	GGCGCC	1 cut(s)	753
DpnI	GATC	5 cut(s)	41, 104, 189, 266, 456
DpnII	GATC	5 cut(s)	39, 102, 187, 264, 454
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	43, 316
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	26, 73
Eco32I	GATATC	1 cut(s)	739
Eco57I	CTGAAG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	43, 316
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	2 cut(s)	26, 73
EgeI	GGCGCC	1 cut(s)	753
EheI	GGCGCC	1 cut(s)	753
ErhI	CCWWGG	2 cut(s)	43, 316
FaeI	CATG	2 cut(s)	47, 655
FatI	CATG	2 cut(s)	43, 651
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	2 cut(s)	264, 454
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	755, 762
FokI	GGATG	2 cut(s)	445, 458
FriOI	GRGCYC	2 cut(s)	26, 73
Fsp4HI	GCNGC	2 cut(s)	755, 762
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	2 cut(s)	755, 762
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	4 cut(s)	5, 534, 552, 599
HhaI	GCGC	1 cut(s)	754
Hin1I	GRCGYC	1 cut(s)	752
Hin1II	CATG	2 cut(s)	47, 655
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	2 cut(s)	110, 784
Hpy166II	GTNNAC	5 cut(s)	128, 365, 626, 712, 780
Hpy188III	TCNNGA	4 cut(s)	88, 191, 224, 413
Hpy8I	GTNNAC	5 cut(s)	128, 365, 626, 712, 780
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	2 cut(s)	496, 798
HpyCH4IV	ACGT	2 cut(s)	228, 302
HpyCH4V	TGCA	4 cut(s)	289, 648, 764, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 758
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	2 cut(s)	228, 302
Hsp92I	GRCGYC	1 cut(s)	752
Hsp92II	CATG	2 cut(s)	47, 655
HspAI	GCGC	1 cut(s)	752
KasI	GGCGCC	1 cut(s)	751
Ksp22I	TGATCA	2 cut(s)	264, 454
Kzo9I	GATC	5 cut(s)	39, 102, 187, 264, 454
LmnI	GCTCC	2 cut(s)	34, 350
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	1 cut(s)	657
MaeII	ACGT	2 cut(s)	228, 302
MaeIII	GTNAC	2 cut(s)	320, 520
MalI	GATC	5 cut(s)	41, 104, 189, 266, 456
MboI	GATC	5 cut(s)	39, 102, 187, 264, 454
MboII	GAAGA	2 cut(s)	715, 779
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	26, 73
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	104, 793
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	7 cut(s)	83, 130, 150, 199, 231, 610, 762
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	173, 177, 243, 527
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	744
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	2 cut(s)	34, 758
NarI	GGCGCC	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	5 cut(s)	39, 102, 187, 264, 454
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	650
NspV	TTCGAA	1 cut(s)	801
PacI	TTAATTAA	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	756, 763
PleI	GAGTC	2 cut(s)	104, 792
PluTI	GGCGCC	1 cut(s)	755
PpsI	GAGTC	2 cut(s)	104, 792
PshBI	ATTAAT	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	532, 550
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	173, 177, 243, 527
SatI	GCNGC	2 cut(s)	755, 762
Sau3AI	GATC	5 cut(s)	39, 102, 187, 264, 454
Sau96I	GGNCC	2 cut(s)	532, 550
SchI	GAGTC	2 cut(s)	104, 793
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	2 cut(s)	26, 73
SfaNI	GCATC	1 cut(s)	657
SfoI	GGCGCC	1 cut(s)	753
SfuI	TTCGAA	1 cut(s)	801
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	2 cut(s)	26, 755
SspDI	GGCGCC	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	2 cut(s)	43, 316
TaaI	ACNGT	2 cut(s)	496, 798
TaiI	ACGT	2 cut(s)	231, 305
TaqI	TCGA	3 cut(s)	67, 333, 801
TauI	GCSGC	1 cut(s)	757
Tru1I	TTAA	4 cut(s)	173, 177, 243, 527
Tru9I	TTAA	4 cut(s)	173, 177, 243, 527
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	761
TspDTI	ATGAA	4 cut(s)	264, 270, 323, 449
TspRI	CASTG	1 cut(s)	376
Van91I	CCANNNNNTGG	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	173
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.