Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015058

Physical Location & Seq

Genomic Coordinates Forward (+)

8495646 .. 8503110

Gene Structure 7465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G105900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCCAGCAACTTGCCGATGAGTCCTCAGTTGGAGCAGATCCATGGTGAAATCCACGATAATTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGACTCCAATAGACAAAGTAAACAGCTGGAAGAACTTACAGGAAAGATGAGGGAATGTAAAAGATTAATCAAAGAGTTTGACCGTGAAATCAAAGATGAGGAGAGCCGAAATCCTCCTGATGTGAATAAACAACTCAATGATGAGAAGCAATCTATGATCAAAGAGCTGAATTCATATGTTCAATTGAGAAAAACGTTTATGAATAGCCTCGGAAACAAGAGAGTCGAACTCTTTGATATGGGAGCAGGAGTTAGTGAACCAACTGCTGACGACAATGTTCAAATGGCTTCAGCTATGTCAAATCAAGAACTAATCGATTCTGGGACGAAAACAATGGATGAGACAGATCAGGTCATTGAACGCTCTAAAAAGGTTGTCGAGCAAACAATTGAAGTGGGAACTCAAACTGCAGTTACCTTAAAGGGCCAAACTGAACAAATGGGCCGCATTGTGAATGAGCTGGACACAATTCAGTTTTCAATTAAGAAGGCCTCCCAGCTGGTGAAAGAGATTGGTAGACAGGTGGCAACAGACAAGTGTATCATGCTTTTTCTTTTGCTTATTGTAGTCGGTGTAATAGCAATTATTGTTGTGAAGATTGTGCACCCTGGCAACAAAAACATCCGGGTTATCCCTGGATTGGCACCACCTGCTGCAAGGAGGCTTTTGTCACTGAGTACTCTGCAACAGTTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009506 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030054 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec20 V-SNARE_C

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

6.87

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48240 AT3G17440 AT3G17440
fragaria_vesca	FvH4_4g21470
malus_domestica	MD13G1140900.v1.1 MD16G1137000.v1.1
prunus_persica	Prupe.1G105900_v2.0.a1 Prupe.1G105900_v2.0.a1
pyrus_communis	pycom13g12240
rosa_chinensis	RchiOBHm_Chr4g0427401
rosa_laevigata	RLG00000007246
rosa_roxburghii	Rroxscaffold_5G00369070
rosa_rugosa	Rorug04G0217800
rosa_samantha	Rh4BG279400 Rh4DG276900
rosa_wichuraiana	Rw4G023750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	625
AciI	CCGC	1 cut(s)	553
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	787
AfiI	CCNNNNNNNGG	2 cut(s)	94, 748
AgsI	TTSAA	5 cut(s)	290, 389, 467, 500, 588
AjnI	CCWGG	2 cut(s)	715, 742
AluBI	AGCT	6 cut(s)	94, 133, 274, 401, 568, 607
AluI	AGCT	6 cut(s)	94, 133, 274, 401, 568, 607
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	443
Alw44I	GTGCAC	1 cut(s)	710
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	3, 532, 550, 597
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	277
AseI	ATTAAT	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	532, 550
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	59, 622
AsuII	TTCGAA	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	631, 664
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	748
BciT130I	CCWGG	2 cut(s)	717, 744
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	734
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	766
BisI	GCNGC	2 cut(s)	553, 762
BlsI	GCNGC	2 cut(s)	554, 763
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	3 cut(s)	717, 734, 744
BmgT120I	GGNCC	2 cut(s)	532, 550
BmiI	GGNNCC	1 cut(s)	753
BmrFI	CCNGG	3 cut(s)	717, 734, 744
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
Bpu14I	TTCGAA	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	734
Bsa29I	ATCGAT	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	43, 316, 715, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 748
BseBI	CCWGG	2 cut(s)	717, 744
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	4 cut(s)	43, 316, 715, 742
BseGI	GGATG	2 cut(s)	451, 729
BseLI	CCNNNNNNNGG	2 cut(s)	94, 748
BseMII	CTCAG	2 cut(s)	41, 773
BseRI	GAGGAG	1 cut(s)	221
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	748
BseYI	CCCAGC	1 cut(s)	603
BshFI	GGCC	4 cut(s)	5, 534, 552, 599
BshNI	GGYRCC	1 cut(s)	751
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	733
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	94, 748
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	4 cut(s)	5, 534, 552, 599
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1286I	GDGCHC	2 cut(s)	73, 714
Bsp143I	GATC	4 cut(s)	39, 102, 264, 454
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	4 cut(s)	5, 534, 552, 599
BspCNI	CTCAG	2 cut(s)	40, 774
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	753
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	801
BspT107I	GGYRCC	1 cut(s)	751
BssECI	CCNNGG	4 cut(s)	43, 316, 715, 742
BssMI	GATC	4 cut(s)	39, 102, 264, 454
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	717, 744
Bst4CI	ACNGT	2 cut(s)	191, 798
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	27, 782
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	451, 729
BstKTI	GATC	4 cut(s)	42, 105, 267, 457
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	4 cut(s)	39, 102, 264, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	717, 744
BstSCI	CCNGG	3 cut(s)	715, 732, 742
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	4 cut(s)	5, 534, 552, 599
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	451, 729
BtsIMutI	CAGTG	1 cut(s)	779
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	532, 550
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	786
CspCI	CAANNNNNGTGG	2 cut(s)	483, 518
CviAII	CATG	2 cut(s)	44, 652
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	2 cut(s)	27, 782
DpnI	GATC	4 cut(s)	41, 104, 266, 456
DpnII	GATC	4 cut(s)	39, 102, 264, 454
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	43
Eco147I	AGGCCT	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	715, 742
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	47, 655
FaiI	YATR	8 cut(s)	45, 263, 283, 285, 308, 347, 404, 653
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	2 cut(s)	43, 651
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	553, 762
FokI	GGATG	2 cut(s)	458, 716
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	553, 762
GluI	GCNGC	2 cut(s)	553, 762
GsaI	CCCAGC	1 cut(s)	607
HaeIII	GGCC	4 cut(s)	5, 534, 552, 599
HapII	CCGG	1 cut(s)	733
Hin1II	CATG	2 cut(s)	47, 655
HinfI	GANTC	4 cut(s)	22, 110, 330, 425
HpaII	CCGG	1 cut(s)	733
HphI	GGTGA	2 cut(s)	59, 622
Hpy166II	GTNNAC	4 cut(s)	128, 365, 626, 712
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	88, 224, 413
Hpy8I	GTNNAC	4 cut(s)	128, 365, 626, 712
HpyAV	CCTTC	1 cut(s)	589
HpyCH4III	ACNGT	2 cut(s)	191, 798
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	518, 712, 764, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	2 cut(s)	27, 782
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	47, 655
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	39, 102, 264, 454
LmnI	GCTCC	2 cut(s)	34, 350
Lsp1109I	GCAGC	1 cut(s)	748
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	520, 777
MalI	GATC	4 cut(s)	41, 104, 266, 456
MboI	GATC	4 cut(s)	39, 102, 264, 454
MboII	GAAGA	2 cut(s)	149, 715
MfeI	CAATTG	2 cut(s)	290, 495
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	73, 714
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	61, 277, 290, 495, 576, 588, 690
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	31, 104, 339
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	8 cut(s)	36, 83, 150, 199, 231, 326, 610, 762
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	173, 527, 591
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	133, 607
MspI	CCGG	1 cut(s)	733
MspR9I	CCNGG	3 cut(s)	717, 734, 744
MunI	CAATTG	2 cut(s)	290, 495
MvaI	CCWGG	2 cut(s)	717, 744
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	4 cut(s)	39, 102, 264, 454
NlaIII	CATG	2 cut(s)	47, 655
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	777
NspV	TTCGAA	1 cut(s)	801
PaqCI	CACCTGC	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	554, 763
PleI	GAGTC	3 cut(s)	30, 104, 338
PpsI	GAGTC	3 cut(s)	30, 104, 338
PshBI	ATTAAT	1 cut(s)	173
Psp1406I	AACGTT	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	715, 742
PspFI	CCCAGC	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	715, 742
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	532, 550
PstI	CTGCAG	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	2 cut(s)	133, 607
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
SaqAI	TTAA	3 cut(s)	173, 527, 591
SatI	GCNGC	2 cut(s)	553, 762
Sau3AI	GATC	4 cut(s)	39, 102, 264, 454
Sau96I	GGNCC	2 cut(s)	532, 550
ScaI	AGTACT	1 cut(s)	787
SchI	GAGTC	3 cut(s)	31, 104, 339
ScrFI	CCNGG	3 cut(s)	717, 734, 744
SduI	GDGCHC	2 cut(s)	73, 714
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	801
Sse9I	AATT	7 cut(s)	61, 277, 290, 495, 576, 588, 690
SseBI	AGGCCT	1 cut(s)	599
SsiI	CCGC	1 cut(s)	553
StuI	AGGCCT	1 cut(s)	599
StyD4I	CCNGG	3 cut(s)	715, 732, 742
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	191, 798
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	5 cut(s)	67, 333, 423, 486, 801
TasI	AATT	7 cut(s)	61, 277, 290, 495, 576, 588, 690
TatI	WGTACW	1 cut(s)	785
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	173, 527, 591
Tru9I	TTAA	3 cut(s)	173, 527, 591
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	1 cut(s)	777
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	2 cut(s)	270, 323
TspRI	CASTG	1 cut(s)	786
Van91I	CCANNNNNTGG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	173
XapI	RAATTY	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	625
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.