AT1G49500

Leucine-rich repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18320490 .. 18322505
2016 bp
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UTR
Exon/CDS
Intron
AT1G49500.2

Sequence Viewer

Length: 192 bp
ATGGTGACTCTAAAAATGGAGATTTGCATCGAGTTGTTGAAATTGACCGTAGATTTCGTCGCCGCCGTTGCAGAATCAATCGAAGTAGCTTTCCGCCATCGTCCTCCACCGGTGATTCAATATTCTTCAGTGATGTATGGTCGCCGGAGTAATTACACCGCCGTTCCCATTCCTCTCGTGGGGTTTCTGTAG

Protein Analysis

63

Amino Acids

7.08

Weight (kDa)

7.92

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018304)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 63, 94, 159
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 179
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 2 cut(s) 40, 119
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 16, 124
BauI CACGAG 1 cut(s) 176
BccI CCATC 1 cut(s) 105
BceAI ACGGC 2 cut(s) 50, 146
BfmI CTRYAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmsI GCATC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 109
BsiSI CCGG 2 cut(s) 110, 145
BslI CCNNNNNNNGG 1 cut(s) 179
BspACI CCGC 3 cut(s) 63, 94, 159
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 109
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
EciI GGCGGA 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 111
FaiI YATR 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HapII CCGG 2 cut(s) 110, 145
HinfI GANTC 3 cut(s) 7, 74, 115
HpaII CCGG 2 cut(s) 110, 145
HphI GGTGA 2 cut(s) 16, 124
Hpy99I CGWCG 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 27, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 123, 158
LweI GCATC 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 1 cut(s) 117
MluCI AATT 2 cut(s) 41, 151
MnlI CCTC 2 cut(s) 114, 183
MspI CCGG 2 cut(s) 110, 145
MwoI GCNNNNNNNGC 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 4
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 74, 115
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 1 cut(s) 64
SatI GCNGC 1 cut(s) 63
SetI ASST 1 cut(s) 91
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 188
SgeI CNNG 4 cut(s) 43, 122, 157, 188
SgrAI CRCCGGYG 1 cut(s) 109
Sse9I AATT 2 cut(s) 41, 151
SsiI CCGC 3 cut(s) 63, 94, 159
SspI AATATT 1 cut(s) 122
TaaI ACNGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 30, 81
TasI AATT 2 cut(s) 41, 151
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 74, 115
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspRI CASTG 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.