Rh6BG097600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
15239454 .. 15278412
38959 bp
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UTR
Exon/CDS
Intron
Rh6BG097600.1

Sequence Viewer

Length: 411 bp
ATGGGAGCATCATGGGTTGTGTATAACACTTTGGTTTCGAGTTTTTGTAAAGAAGGCAAGATTGATGAGGTTGAGAAATTGGTGGAGAGGATGAGAGATGAGGGTAAAGTATCGACTAGTTTTGACCTGTTTATTACTTCTTTATTTGGATGCATAAATACACGTTTGATCACATGGGATGTGGAGAATAGAAAGCGAAGAAGATTATATCATAAAAGCGAAGAGTGTATTGCAGCTATGGTGATTCTGAGGTTGGACACGTGTGTGGAGCTACTGAAGCTGGCCATAGAGTTCGTCATCGTCGTAGCAGAAGCAGTCGAGATAGCTCTTCAGCAGAACTTCCCTCCAAATCTTACCAGTACTTCAGCTTATACCAGCACTCATCTTCCTTTTGTTGGCTTTCTCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.46

Weight (kDa)

5.71

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 6 - 35 1.3e-08 PPR repeat
PPR_1 PF12854 6 - 32 2.3e-08 PPR repeat
PPR_2 PF13041 6 - 35 2.8e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018304)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 282
AcuI CTGAAG 3 cut(s) 296, 314, 348
AcvI CACGTG 1 cut(s) 261
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 3 cut(s) 161, 258, 260
AhlI ACTAGT 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 5 cut(s) 236, 271, 280, 326, 368
AluI AGCT 5 cut(s) 236, 271, 280, 326, 368
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 253
BalI TGGCCA 1 cut(s) 284
BbrPI CACGTG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 245
BclI TGATCA 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmcAI AGTACT 1 cut(s) 361
BmsI GCATC 2 cut(s) 17, 140
BsaAI YACGTR 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 357
BseGI GGATG 3 cut(s) 96, 155, 184
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 395
BsnI GGCC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 168
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 357
BssMI GATC 1 cut(s) 168
Bst6I CTCTTC 2 cut(s) 216, 333
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 96, 155, 184
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 3 cut(s) 96, 155, 184
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 360
CviAII CATG 2 cut(s) 12, 174
CviJI RGCY 7 cut(s) 236, 271, 280, 284, 326, 368, 399
CviKI_1 RGCY 7 cut(s) 236, 271, 280, 284, 326, 368, 399
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 248
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 216, 333
EarI CTCTTC 2 cut(s) 216, 333
Eco57I CTGAAG 3 cut(s) 296, 314, 348
Eco72I CACGTG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 155
FaeI CATG 2 cut(s) 15, 177
FaiI YATR 9 cut(s) 13, 24, 155, 175, 208, 213, 239, 287, 372
FatI CATG 2 cut(s) 11, 173
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 103, 162, 191
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 284
Hin1II CATG 2 cut(s) 15, 177
HinfI GANTC 1 cut(s) 244
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 163, 260
HpyCH4V TGCA 2 cut(s) 153, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 2 cut(s) 163, 260
Hsp92II CATG 2 cut(s) 15, 177
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 5, 268
LpnPI CCDG 4 cut(s) 140, 266, 370, 388
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 17, 140
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 163, 260
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 5 cut(s) 210, 213, 233, 320, 377
MlsI TGGCCA 1 cut(s) 284
MluCI AATT 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 5 cut(s) 61, 81, 94, 243, 354
Mox20I TGGCCA 1 cut(s) 284
Mph1103I ATGCAT 1 cut(s) 155
MscI TGGCCA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 1 cut(s) 168
NlaIII CATG 2 cut(s) 15, 177
NsiI ATGCAT 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 235
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 261
PspCI CACGTG 1 cut(s) 261
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 333
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 361
SfaNI GCATC 2 cut(s) 17, 140
SmiMI CAYNNNNRTG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 1 cut(s) 77
SspMI CTAG 1 cut(s) 117
TaiI ACGT 2 cut(s) 166, 263
TaqI TCGA 3 cut(s) 38, 113, 318
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 1 cut(s) 244
TseI GCWGC 1 cut(s) 233
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 361
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.