Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G49500 AT1G49500 AT2G15830 AT3G19030 AT4G33960 |
| prunus_persica | Prupe.8G115400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0259401 |
| rosa_roxburghii | Rroxscaffold_7G00206680 |
| rosa_samantha | Rh6AG104400 Rh6BG097600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 170 |
| AleI | CACNNNNGTG | 1 cut(s) | 65 |
| AluBI | AGCT | 2 cut(s) | 16, 89 |
| AluI | AGCT | 2 cut(s) | 16, 89 |
| Alw26I | GTCTC | 2 cut(s) | 12, 114 |
| AsuHPI | GGTGA | 2 cut(s) | 49, 52 |
| BceAI | ACGGC | 1 cut(s) | 137 |
| BcoDI | GTCTC | 2 cut(s) | 12, 114 |
| BfaI | CTAG | 1 cut(s) | 17 |
| BisI | GCNGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 1 cut(s) | 151 |
| BmsI | GCATC | 1 cut(s) | 36 |
| BsaBI | GATNNNNATC | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 1 cut(s) | 66 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 170 |
| Bse8I | GATNNNNATC | 1 cut(s) | 26 |
| BseDI | CCNNGG | 1 cut(s) | 66 |
| BseJI | GATNNNNATC | 1 cut(s) | 26 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 170 |
| BsiSI | CCGG | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 170 |
| BsmAI | GTCTC | 2 cut(s) | 12, 114 |
| BsmBI | CGTCTC | 1 cut(s) | 114 |
| BspACI | CCGC | 1 cut(s) | 150 |
| BssECI | CCNNGG | 1 cut(s) | 66 |
| Bst4CI | ACNGT | 3 cut(s) | 67, 108, 128 |
| Bst6I | CTCTTC | 1 cut(s) | 117 |
| BstDSI | CCRYGG | 1 cut(s) | 66 |
| BstMAI | GTCTC | 2 cut(s) | 12, 114 |
| BtgI | CCRYGG | 1 cut(s) | 66 |
| CviAII | CATG | 1 cut(s) | 178 |
| CviJI | RGCY | 4 cut(s) | 16, 71, 89, 100 |
| CviKI_1 | RGCY | 4 cut(s) | 16, 71, 89, 100 |
| Eam1104I | CTCTTC | 1 cut(s) | 117 |
| EarI | CTCTTC | 1 cut(s) | 117 |
| Esp3I | CGTCTC | 1 cut(s) | 114 |
| FaeI | CATG | 1 cut(s) | 181 |
| FaiI | YATR | 1 cut(s) | 179 |
| FatI | CATG | 1 cut(s) | 177 |
| Fnu4HI | GCNGC | 1 cut(s) | 150 |
| Fsp4HI | GCNGC | 1 cut(s) | 150 |
| FspBI | CTAG | 1 cut(s) | 17 |
| GluI | GCNGC | 1 cut(s) | 150 |
| HapII | CCGG | 1 cut(s) | 136 |
| Hin1II | CATG | 1 cut(s) | 181 |
| HindIII | AAGCTT | 1 cut(s) | 87 |
| HinfI | GANTC | 2 cut(s) | 74, 174 |
| HpaII | CCGG | 1 cut(s) | 136 |
| HphI | GGTGA | 2 cut(s) | 49, 52 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| HpyCH4III | ACNGT | 3 cut(s) | 67, 108, 128 |
| HpyCH4V | TGCA | 1 cut(s) | 27 |
| Hsp92II | CATG | 1 cut(s) | 181 |
| LpnPI | CCDG | 2 cut(s) | 129, 149 |
| LweI | GCATC | 1 cut(s) | 36 |
| MaeI | CTAG | 1 cut(s) | 17 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MboII | GAAGA | 2 cut(s) | 95, 104 |
| MluCI | AATT | 3 cut(s) | 32, 42, 142 |
| MmeI | TCCRAC | 1 cut(s) | 151 |
| MnlI | CCTC | 2 cut(s) | 111, 174 |
| MslI | CAYNNNNRTG | 1 cut(s) | 65 |
| MspI | CCGG | 1 cut(s) | 136 |
| NlaIII | CATG | 1 cut(s) | 181 |
| NmuCI | GTSAC | 1 cut(s) | 58 |
| OliI | CACNNNNGTG | 1 cut(s) | 65 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 63 |
| PfeI | GAWTC | 2 cut(s) | 74, 174 |
| PkrI | GCNGC | 1 cut(s) | 151 |
| RseI | CAYNNNNRTG | 1 cut(s) | 65 |
| SatI | GCNGC | 1 cut(s) | 150 |
| SetI | ASST | 2 cut(s) | 18, 91 |
| SfaNI | GCATC | 1 cut(s) | 36 |
| SgeI | CNNG | 6 cut(s) | 29, 79, 128, 137, 148, 179 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 65 |
| Sse9I | AATT | 3 cut(s) | 32, 42, 142 |
| SsiI | CCGC | 1 cut(s) | 150 |
| SspMI | CTAG | 1 cut(s) | 17 |
| TaaI | ACNGT | 3 cut(s) | 67, 108, 128 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 3 cut(s) | 32, 42, 142 |
| TauI | GCSGC | 1 cut(s) | 152 |
| TfiI | GAWTC | 2 cut(s) | 74, 174 |
| TseFI | GTSAC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 58 |
| TspDTI | ATGAA | 1 cut(s) | 166 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| XspI | CTAG | 1 cut(s) | 17 |