AT2G15830

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
6893949 .. 6894685
737 bp
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UTR
Exon/CDS
Intron
AT2G15830.1

Sequence Viewer

Length: 201 bp
ATGGTGATAAAGAAAATCGAGCTATGCATAGAGATTACGAAGATAACAATGGAGTTCTTGGTGGTGGTGGCTGACGCCGTCACAATCTTCTTAAGGCAATCTTCTCCACCTCCTCCGGCTCTACTCCGCCATGGTCTCTACTCATACTCTGCCTCCCCTAATCCTCCTTCTTCCCATTACATCATCGGCTTTCTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.31

Weight (kDa)

7.93

Isoelectric Point (pI)

82.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018304)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 75
AflII CTTAAG 1 cut(s) 91
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 16
BceAI ACGGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
BseDI CCNNGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 91
BstDSI CCRYGG 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 130
CseI GACGC 1 cut(s) 83
CviAII CATG 1 cut(s) 131
CviJI RGCY 4 cut(s) 22, 71, 119, 189
CviKI_1 RGCY 4 cut(s) 22, 71, 119, 189
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 134
FaiI YATR 4 cut(s) 25, 29, 132, 145
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 1 cut(s) 130
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 134
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 134
LpnPI CCDG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 5 cut(s) 52, 79, 93, 162, 185
MnlI CCTC 4 cut(s) 120, 123, 163, 174
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 130
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 92
SetI ASST 2 cut(s) 24, 112
SgeI CNNG 4 cut(s) 31, 70, 128, 143
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SsiI CCGC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 130
TaqI TCGA 1 cut(s) 18
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
Tth111I GACNNNGTC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.