Prupe.8G115400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
14258448 .. 14259608
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G115400.1

Sequence Viewer

Length: 171 bp
ATGGTGATCCAGAGGCTGGAAATGTGTCTAGAGCTGCTGAAACTGGCCCTGGAGTTTGTCCTCCTTGTAGCTCAAGCAGTGGAGATTGCCCTTCAGCACAACATGTCTCCATTCACCAGCTATTCAGCTTATAGCAGTGTTCCAGTTCATTTTGTTGGTTTTCTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.3

Weight (kDa)

5.39

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018304)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 102
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 4 cut(s) 34, 71, 120, 128
AluI AGCT 4 cut(s) 34, 71, 120, 128
Alw26I GTCTC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 16, 106
BbvI GCAGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 48, 143
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 48, 143
BseXI GCAGC 1 cut(s) 21
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 48, 143
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 50
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 6
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 47
BtsI GCAGTG 2 cut(s) 84, 142
BtsIMutI CAGTG 2 cut(s) 84, 142
CaiI CAGNNNCTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 16, 34, 47, 71, 120, 128
CviKI_1 RGCY 6 cut(s) 16, 34, 47, 71, 120, 128
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 132, 169
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 47
Hin1II CATG 1 cut(s) 106
HphI GGTGA 2 cut(s) 16, 106
Hpy188III TCNNGA 2 cut(s) 10, 29
HpyAV CCTTC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 7 cut(s) 2, 23, 29, 35, 62, 130, 156
Lsp1109I GCAGC 1 cut(s) 21
MaeI CTAG 1 cut(s) 29
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 155
MnlI CCTC 2 cut(s) 6, 71
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 106
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 1 cut(s) 36
PscI ACATGT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 16
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 50
SetI ASST 4 cut(s) 36, 73, 122, 130
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 48
TscAI CASTG 2 cut(s) 84, 142
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 2 cut(s) 84, 142
Van91I CCANNNNNTGG 1 cut(s) 16
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 106
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.