AT1G49540

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009434
Physical Location & Seq
Reverse (-)
18333623 .. 18337520
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49540.2

Sequence Viewer

Length: 2517 bp
ATGTCAGAAAACACAAAAGTCGAAGCGAAGAGAGTGTTCATAGGAGCAGGATGCAACAGAGTCGTCAATAACGTCTCTTGGGGAGCTTCTGGTCTTGTCTCTTTCGGTGCCCAAAACGCCGTTGCTGTTTTCTGCCCTAAGACTGCCCAGATTCTTACAACGCTCCCAGGTCATAAAGCTTCTGTGAATTGCACTCATTGGTTACCCACTTCCAAGTTTGCCTTCAAAGCCAAGAAATTGGACCGGCAATATCTGCTATCAGGTGATTCAGATGGTATCATCATCCTCTGGGAACTATCTACTCTTAATAACGATTGGAGACATGTACTACAACTACCACTGTCTCACAAGAAAGGTGTAACTTGTATCACCGCTTATATGGTTTCTGAAACCGATGCAATGTTTGCTTCAGCTTCTTCTGATGGAGTTGTGAATGTCTGGGATGTTTCTTTTCCGTCTCAGCCTAGTGAGGAATGTAAAGTGGTGTGTCTGGACTCTATCTGTGTTGACACTAAAGCAATTGTAACGCTTTCATTAGCGGAATTGCCTCAAAATCCTGGTCGATTTGCCCTTGCTTTGGGCGGATTGGACAACAAAATCAAACTTTACTCTGGAGAAAGAACAGGAAAGTTTACTTCTGTTTGTGAGCTTAAAGGCCACACGGACTGGATTCGGAGTTTGGACTTCTCATTACCGTTACACACAACAGAAGAAATACCCAATAGTATTATGCTTGTGAGTTCTTCCCAGGACAAAGTTATTCGGATCTGGAAACTAGTGTTAGTCGGTGATGTTGGCTCGTGGCGAAGAGAAATCACTCTAGCTTCTTACATTGAAGGCCCAGTTTTCGTCTCAGGGACATTTACATATCAGATTTCAGTTGAATCTGTTCTGATTGGACATGAAGATTGGGTCTATTCTGTGGAATGGCAACCTCCAGTCATCGATTTCATTGATGGGCGGCTAGTTAACCACCAACCGCTGAGCATTTTATCGGCTTCGATGGACAAAACGATGATGATTTGGCGGCCTGAGAAGAAAACGGGTGTGTGGGTGAACGTTGTCTGTGTTGGAGAGCTAAGTCACTGTGCTCTTGGTTTCTACGGTGGTCATTGGAGCCCAAATAGTCTGTCTATTCTGGCTCATGGATATGGCGGAGCTTTTCATCTCTGGAGAAATGTTAGTAGCAGCAAAGAGTCTGAGAATTGGCAGATGCAGAAAGTTCCTTCGGGTCACTTTGCTGCTGTGACTGATGTCACATGGGCTAGAACCGGCGAGTACTTGCTATCCGTGAGCCAAGATCAGACCACTCGTGTGTTCTCAGCATGGAAGAATGATGAGGGGAATGAAGCAGAGGATGAGCATTGGCATGAACTGGCTCGTCCTCAGGTTCACGGGCATGATATTAACTGTGTGGCTATGGTTCAAGGTAAAGGCAACCACCGTTTTGTTAGTGGAGCAGAGGAGAAAGTTGTGAGAGTGTTTGAGGCTCCTCTGTCGTTCTTGAAGACTCTGAACCACACTTGTGCGGGAGGAGAAGGAAGCTTCCCTGAGGATTTACAAGCAGACGTGCAGGTTCTTGGAGCGAATATGTCTGCTCTTGGATTATCACAGAAACCTATCTACTTACACTCTTCTAGTGAACCACTGGAGAGAAATGGCGGAGGCGAAGGTTTGGATACATTTGAGACAGTTCCAGAGGCGGCTCCAGCAGAGTTGAAAGAGCCTCCAATCGAAGATCAGCTTGCGTTTCATACTTTATGGCCGGAATCTCATAAACTCTATGGTCATGGTAATGAACTATTTTCTCTCTGCTCTGACCACAAGGGAAACCTTGTTGCTTCATCGTGTAAGGCTCAATCTGCATCCATGGCAGAGATATGGCTATGGGAGGTTGGGACATGGAAAGCTGTTGGTCGTTTGCAATCTCACAGCTTGACGGTGACGCACTTGGAGTTCTCTTATGATGACACTCTGCTCTTGTCTGTCTCAAGAGATCGTCACTTCTCCGTTTTCTCTATCCAAAGGACAGACAATGGTGAGGTTAGTCACAAACTCATGGCAAAGGTTGAAGCACACAAGAGGATCATATGGGCATGTTCATGGAACCCGTTTGGCCACCAATTTGCAACTTCATCAAGGGACAAGACTGTCAAGATCTGGTCAGTTGAGAACGACGCTCGCATTAAACAGATTCTTGTCTTGCCTCCGTTTGGAAGCAGTGTAACGGCCGTGGCTTGGACTGGACTAGACCGCAACGAGAAGAGTGGGTGCGTGGCAGTGGGGATGGAAAGCGGGCTAATAGAGCTGTCGAACGTAAAGATTATAGAAACAGAGGAAGGTACGACTGCAACAGCAGCTCTTGCTCTTCGGCTCGAACCGTTCATGTGTCATGTCTCGGCTGTGAACAGGTTAGCTTGGAGACCAACCGAGAAGTGTGAGTCTAATCAGAGCTTGCGATGGTTAACTTCTTGTGGGGATGATAATTGTGTGAGAGTTTTTAACTTCAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051252 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1903506 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

838

Amino Acids

92.68

Weight (kDa)

5.95

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 20 - 151 2e-08 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 22 - 261 1.2e-09 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 32 - 152 5.3e-08 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 33 - 151 4e-07 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 80 - 261 3.7e-06 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 81 - 260 1.4e-11 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 117 - 261 1.4e-09 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 325 - 446 6.1e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 403 - 499 1e-05 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 414 - 499 1.3e-06 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 592 - 688 3.5e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 595 - 725 3.1e-11 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 597 - 747 1e-14 WDR5 beta-propeller domain
Beta-prop_EML PF23409 598 - 733 3.5e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 604 - 752 5e-11 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 626 - 747 7.4e-08 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 635 - 739 5e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 636 - 733 6.3e-08 WDR3 second beta-propeller domain
EIF3I PF24805 643 - 736 1.4e-07 EIF3I
WD40 PF00400 688 - 724 1.3e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 695 - 750 4.7e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2150
Acc36I ACCTGC 1 cut(s) 1564
AccB1I GGYRCC 1 cut(s) 107
AclI AACGTT 1 cut(s) 1059
AclWI GGATC 2 cut(s) 773, 2093
AcoI YGGCCR 3 cut(s) 1763, 2116, 2229
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 3 cut(s) 327, 1280, 2344
AfiI CCNNNNNNNGG 3 cut(s) 577, 2213, 2238
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 8 cut(s) 226, 836, 884, 1427, 1507, 1720, 2072, 2509
AhlI ACTAGT 1 cut(s) 775
AjiI CACGTC 1 cut(s) 1570
AjnI CCWGG 3 cut(s) 166, 556, 747
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 2 cut(s) 1313, 1524
Alw21I GWGCWC 1 cut(s) 1093
AlwI GGATC 2 cut(s) 773, 2093
AoxI GGCC 6 cut(s) 655, 838, 1028, 1763, 2116, 2229
ApeKI GCWGC 3 cut(s) 1188, 1241, 2357
ArsI GACNNNNNNTTYG 4 cut(s) 544, 576, 1115, 1147
Asp700I GAANNNNTTC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 241, 839
AsuHPI GGTGA 6 cut(s) 275, 361, 800, 1066, 1954, 2051
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 2 cut(s) 1386, 1551
BaeGI GKGCMC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 2118
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 1121
BauI CACGAG 2 cut(s) 799, 1311
BbsI GAAGAC 1 cut(s) 1514
Bbv12I GWGCWC 1 cut(s) 1093
BbvI GCAGC 3 cut(s) 1200, 1228, 2369
BccI CCATC 6 cut(s) 266, 416, 950, 997, 2281, 2454
BceAI ACGGC 3 cut(s) 104, 2216, 2244
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 3 cut(s) 168, 558, 749
BciVI GTATCC 1 cut(s) 1672
BcuI ACTAGT 1 cut(s) 775
BfaI CTAG 7 cut(s) 465, 776, 821, 965, 1266, 1638, 2249
BfuAI ACCTGC 1 cut(s) 1564
BfuI GTATCC 1 cut(s) 1672
BglII AGATCT 1 cut(s) 2157
BisI GCNGC 6 cut(s) 962, 1028, 1189, 1242, 1704, 2358
BlpI GCTNAGC 1 cut(s) 983
BlsI GCNGC 6 cut(s) 963, 1029, 1190, 1243, 1705, 2359
BmcAI AGTACT 1 cut(s) 1280
Bme1390I CCNGG 3 cut(s) 168, 558, 749
Bme18I GGWCC 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 1570
BmgT120I GGNCC 2 cut(s) 241, 839
BmiI GGNNCC 5 cut(s) 109, 1118, 1491, 1707, 2108
BmrFI CCNGG 3 cut(s) 168, 558, 749
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 4 cut(s) 41, 385, 1203, 1874
BmuI ACTGGG 1 cut(s) 836
BoxI GACNNNNGTC 1 cut(s) 1253
BpiI GAAGAC 1 cut(s) 1514
BpmI CTGGAG 5 cut(s) 633, 921, 1192, 1670, 1692
Bpu1102I GCTNAGC 1 cut(s) 983
BpuEI CTTGAG 1 cut(s) 1975
Bsa29I ATCGAT 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 2416
BsaJI CCNNGG 4 cut(s) 166, 747, 1869, 2232
Bsc4I CCNNNNNNNGG 3 cut(s) 577, 2213, 2238
Bse118I RCCGGY 2 cut(s) 243, 1271
Bse1I ACTGG 6 cut(s) 671, 842, 938, 1380, 1653, 2248
Bse21I CCTNAGG 2 cut(s) 1386, 1551
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 3 cut(s) 168, 558, 749
BseCI ATCGAT 1 cut(s) 945
BseDI CCNNGG 4 cut(s) 166, 747, 1869, 2232
BseGI GGATG 7 cut(s) 56, 282, 448, 1363, 1865, 2292, 2485
BseLI CCNNNNNNNGG 3 cut(s) 577, 2213, 2238
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 8 cut(s) 473, 867, 974, 1023, 1191, 1335, 1400, 1542
BseNI ACTGG 6 cut(s) 671, 842, 938, 1380, 1653, 2248
BseRI GAGGAG 3 cut(s) 1478, 1482, 1548
BseSI GKGCMC 1 cut(s) 112
BseX3I CGGCCG 1 cut(s) 2229
BseXI GCAGC 3 cut(s) 1200, 1228, 2369
BsgI GTGCAG 1 cut(s) 1592
Bsh1285I CGRYCG 1 cut(s) 2232
BshFI GGCC 6 cut(s) 657, 840, 1030, 1765, 2118, 2231
BshNI GGYRCC 1 cut(s) 107
BshVI ATCGAT 1 cut(s) 945
BsiEI CGRYCG 1 cut(s) 2232
BsiHKAI GWGCWC 1 cut(s) 1093
BsiSI CCGG 3 cut(s) 244, 1272, 1766
BslFI GGGAC 3 cut(s) 871, 1912, 2156
BslI CCNNNNNNNGG 3 cut(s) 577, 2213, 2238
BsmBI CGTCTC 3 cut(s) 79, 462, 856
BsmFI GGGAC 3 cut(s) 871, 1912, 2156
BsnI GGCC 6 cut(s) 657, 840, 1030, 1765, 2118, 2231
Bso31I GGTCTC 1 cut(s) 2416
Bsp1286I GDGCHC 3 cut(s) 112, 1093, 1121
Bsp143I GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
Bsp1720I GCTNAGC 1 cut(s) 983
Bsp19I CCATGG 1 cut(s) 1869
BspANI GGCC 6 cut(s) 657, 840, 1030, 1765, 2118, 2231
BspCNI CTCAG 8 cut(s) 472, 866, 975, 1024, 1192, 1334, 1399, 1543
BspDI ATCGAT 1 cut(s) 945
BspLI GGNNCC 5 cut(s) 109, 1118, 1491, 1707, 2108
BspMI ACCTGC 1 cut(s) 1564
BspPI GGATC 2 cut(s) 773, 2093
BspQI GCTCTTC 1 cut(s) 2373
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 2416
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 2 cut(s) 243, 1271
BsrI ACTGG 6 cut(s) 671, 842, 938, 1380, 1653, 2248
BssAI RCCGGY 2 cut(s) 243, 1271
BssECI CCNNGG 4 cut(s) 166, 747, 1869, 2232
BssMI GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
BssSI CACGAG 2 cut(s) 799, 1311
BssT1I CCWWGG 1 cut(s) 1869
Bst2BI CACGAG 2 cut(s) 799, 1311
Bst2UI CCWGG 3 cut(s) 168, 558, 749
Bst6I CTCTTC 5 cut(s) 23, 802, 1639, 2258, 2373
BstAPI GCANNNNNTGC 3 cut(s) 253, 404, 2363
BstC8I GCNNGC 4 cut(s) 1746, 2182, 2297, 2456
BstDSI CCRYGG 2 cut(s) 1869, 2232
BstEII GGTNACC 1 cut(s) 201
BstF5I GGATG 7 cut(s) 56, 282, 448, 1363, 1865, 2292, 2485
BstKTI GATC 6 cut(s) 768, 1303, 1741, 1999, 2088, 2160
BstMBI GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
BstMCI CGRYCG 1 cut(s) 2232
BstNI CCWGG 3 cut(s) 168, 558, 749
BstNSI RCATGY 2 cut(s) 326, 2100
BstPAI GACNNNNGTC 1 cut(s) 1253
BstPI GGTNACC 1 cut(s) 201
BstSCI CCNGG 3 cut(s) 166, 556, 747
BstSLI GKGCMC 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 1200, 1228, 2369
BstV2I GAAGAC 1 cut(s) 1514
BstX2I RGATCY 2 cut(s) 765, 2157
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 2 cut(s) 765, 2157
BstZI CGGCCG 1 cut(s) 2229
Bsu15I ATCGAT 1 cut(s) 945
Bsu36I CCTNAGG 2 cut(s) 1386, 1551
BsuI GTATCC 1 cut(s) 1672
BsuRI GGCC 6 cut(s) 657, 840, 1030, 1765, 2118, 2231
BsuTUI ATCGAT 1 cut(s) 945
BtgI CCRYGG 2 cut(s) 1869, 2232
BtgZI GCGATG 1 cut(s) 2473
BtrI CACGTC 1 cut(s) 1570
BtsCI GGATG 7 cut(s) 56, 282, 448, 1363, 1865, 2292, 2485
BtsI GCAGTG 2 cut(s) 2227, 2286
BtsIMutI CAGTG 5 cut(s) 338, 1084, 1646, 2227, 2286
BveI ACCTGC 1 cut(s) 1564
Cac8I GCNNGC 4 cut(s) 1746, 2182, 2297, 2456
Cfr10I RCCGGY 2 cut(s) 243, 1271
Cfr13I GGNCC 2 cut(s) 241, 839
ClaI ATCGAT 1 cut(s) 945
CseI GACGC 2 cut(s) 1954, 2186
Csp6I GTAC 3 cut(s) 326, 1279, 2343
CviQI GTAC 3 cut(s) 326, 1279, 2343
DpnI GATC 6 cut(s) 767, 1302, 1740, 1998, 2087, 2159
DpnII GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
DrdI GACNNNNNNGTC 1 cut(s) 2150
DseDI GACNNNNNNGTC 1 cut(s) 2150
EaeI YGGCCR 3 cut(s) 1763, 2116, 2229
EagI CGGCCG 1 cut(s) 2229
Eam1104I CTCTTC 5 cut(s) 23, 802, 1639, 2258, 2373
EarI CTCTTC 5 cut(s) 23, 802, 1639, 2258, 2373
EciI GGCGGA 3 cut(s) 597, 1170, 1677
EclXI CGGCCG 1 cut(s) 2229
Eco130I CCWWGG 1 cut(s) 1869
Eco24I GRGCYC 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 2416
Eco47I GGWCC 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 2229
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 2 cut(s) 1386, 1551
Eco91I GGTNACC 1 cut(s) 201
EcoO65I GGTNACC 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 166, 556, 747
EcoT14I CCWWGG 1 cut(s) 1869
EcoT38I GRGCYC 1 cut(s) 1121
ErhI CCWWGG 1 cut(s) 1869
Esp3I CGTCTC 3 cut(s) 79, 462, 856
FalI AAGNNNNNCTT 4 cut(s) 206, 238, 1728, 1760
FaqI GGGAC 3 cut(s) 871, 1912, 2156
FauI CCCGC 2 cut(s) 1522, 2288
FauNDI CATATG 1 cut(s) 2090
Fnu4HI GCNGC 6 cut(s) 962, 1028, 1189, 1242, 1704, 2358
FokI GGATG 7 cut(s) 63, 269, 455, 1370, 1852, 2299, 2492
FriOI GRGCYC 1 cut(s) 1121
Fsp4HI GCNGC 6 cut(s) 962, 1028, 1189, 1242, 1704, 2358
FspBI CTAG 7 cut(s) 465, 776, 821, 965, 1266, 1638, 2249
GluI GCNGC 6 cut(s) 962, 1028, 1189, 1242, 1704, 2358
GsuI CTGGAG 5 cut(s) 633, 921, 1192, 1670, 1692
HaeIII GGCC 6 cut(s) 657, 840, 1030, 1765, 2118, 2231
HapII CCGG 3 cut(s) 244, 1272, 1766
HgaI GACGC 2 cut(s) 1954, 2186
HincII GTYRAC 3 cut(s) 508, 970, 2466
HindII GTYRAC 3 cut(s) 508, 970, 2466
HindIII AAGCTT 2 cut(s) 177, 1543
HpaI GTTAAC 2 cut(s) 970, 2466
HpaII CCGG 3 cut(s) 244, 1272, 1766
HphI GGTGA 6 cut(s) 275, 361, 800, 1066, 1954, 2051
Hpy166II GTNNAC 8 cut(s) 508, 633, 970, 1057, 1393, 1643, 2407, 2466
Hpy188III TCNNGA 8 cut(s) 491, 612, 769, 1171, 1504, 1697, 1992, 2155
Hpy8I GTNNAC 8 cut(s) 508, 633, 970, 1057, 1393, 1643, 2407, 2466
Hpy99I CGWCG 1 cut(s) 2180
HpyAV CCTTC 6 cut(s) 232, 830, 1236, 1532, 1664, 2333
HpyCH4IV ACGT 4 cut(s) 72, 1059, 1569, 2316
HpyCH4V TGCA 9 cut(s) 54, 192, 398, 1216, 1573, 1865, 1924, 2129, 2351
HpySE526I ACGT 4 cut(s) 72, 1059, 1569, 2316
KspAI GTTAAC 2 cut(s) 970, 2466
Kzo9I GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
LguI GCTCTTC 1 cut(s) 2373
LmnI GCTCC 9 cut(s) 44, 83, 168, 1116, 1157, 1457, 1495, 1583, 1711
Lsp1109I GCAGC 3 cut(s) 1200, 1228, 2369
LweI GCATC 4 cut(s) 41, 385, 1203, 1874
MaeI CTAG 7 cut(s) 465, 776, 821, 965, 1266, 1638, 2249
MaeII ACGT 4 cut(s) 72, 1059, 1569, 2316
MalI GATC 6 cut(s) 767, 1302, 1740, 1998, 2087, 2159
MboI GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 2 cut(s) 765, 2157
MhlI GDGCHC 3 cut(s) 112, 1093, 1121
MlsI TGGCCA 1 cut(s) 2118
MluCI AATT 7 cut(s) 187, 236, 519, 542, 1204, 2123, 2485
MluNI TGGCCA 1 cut(s) 2118
MlyI GAGTC 5 cut(s) 69, 488, 1205, 1504, 2450
MmeI TCCRAC 1 cut(s) 1051
Mox20I TGGCCA 1 cut(s) 2118
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 1 cut(s) 2118
MseI TTAA 7 cut(s) 306, 651, 969, 1407, 2187, 2465, 2502
MslI CAYNNNNRTG 7 cut(s) 1149, 1313, 1368, 1398, 1524, 1794, 2101
Msp20I TGGCCA 1 cut(s) 2118
MspA1I CMGCKG 1 cut(s) 982
MspI CCGG 3 cut(s) 244, 1272, 1766
MspR9I CCNGG 3 cut(s) 168, 558, 749
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 3 cut(s) 168, 558, 749
NcoI CCATGG 1 cut(s) 1869
NdeI CATATG 1 cut(s) 2090
NdeII GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
NlaIV GGNNCC 5 cut(s) 109, 1118, 1491, 1707, 2108
NmeAIII GCCGAG 1 cut(s) 2378
NmuCI GTSAC 7 cut(s) 1082, 1232, 1246, 1255, 1942, 2000, 2048
NspI RCATGY 2 cut(s) 326, 2100
OliI CACNNNNGTG 2 cut(s) 1313, 1524
PciI ACATGT 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 2373
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 6 cut(s) 151, 266, 670, 884, 1769, 2194
PkrI GCNGC 6 cut(s) 963, 1029, 1190, 1243, 1705, 2359
PleI GAGTC 5 cut(s) 68, 488, 1204, 1504, 2449
PpsI GAGTC 5 cut(s) 68, 488, 1204, 1504, 2449
PscI ACATGT 1 cut(s) 322
PshAI GACNNNNGTC 1 cut(s) 1253
Psp1406I AACGTT 1 cut(s) 1059
Psp6I CCWGG 3 cut(s) 166, 556, 747
PspEI GGTNACC 1 cut(s) 201
PspGI CCWGG 3 cut(s) 166, 556, 747
PspN4I GGNNCC 5 cut(s) 109, 1118, 1491, 1707, 2108
PspPI GGNCC 2 cut(s) 241, 839
PsuI RGATCY 2 cut(s) 765, 2157
RsaI GTAC 3 cut(s) 327, 1280, 2344
RsaNI GTAC 3 cut(s) 326, 1279, 2343
RseI CAYNNNNRTG 7 cut(s) 1149, 1313, 1368, 1398, 1524, 1794, 2101
SapI GCTCTTC 1 cut(s) 2373
SaqAI TTAA 7 cut(s) 306, 651, 969, 1407, 2187, 2465, 2502
SatI GCNGC 6 cut(s) 962, 1028, 1189, 1242, 1704, 2358
Sau3AI GATC 6 cut(s) 765, 1300, 1738, 1996, 2085, 2157
Sau96I GGNCC 2 cut(s) 241, 839
ScaI AGTACT 1 cut(s) 1280
SchI GAGTC 5 cut(s) 69, 488, 1205, 1504, 2450
ScrFI CCNGG 3 cut(s) 168, 558, 749
SduI GDGCHC 3 cut(s) 112, 1093, 1121
SfaNI GCATC 4 cut(s) 41, 385, 1203, 1874
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 7 cut(s) 1149, 1313, 1368, 1398, 1524, 1794, 2101
SmlI CTYRAG 1 cut(s) 1990
SmoI CTYRAG 1 cut(s) 1990
SpeI ACTAGT 1 cut(s) 775
Sse9I AATT 7 cut(s) 187, 236, 519, 542, 1204, 2123, 2485
SspMI CTAG 7 cut(s) 465, 776, 821, 965, 1266, 1638, 2249
StyD4I CCNGG 3 cut(s) 166, 556, 747
StyI CCWWGG 1 cut(s) 1869
TaiI ACGT 4 cut(s) 75, 1062, 1572, 2319
TaqI TCGA 7 cut(s) 21, 562, 945, 1001, 1734, 2312, 2376
TasI AATT 7 cut(s) 187, 236, 519, 542, 1204, 2123, 2485
TatI WGTACW 2 cut(s) 325, 1278
TauI GCSGC 3 cut(s) 964, 1030, 1706
TfiI GAWTC 6 cut(s) 151, 266, 670, 884, 1769, 2194
Tru1I TTAA 7 cut(s) 306, 651, 969, 1407, 2187, 2465, 2502
Tru9I TTAA 7 cut(s) 306, 651, 969, 1407, 2187, 2465, 2502
TscAI CASTG 5 cut(s) 345, 1091, 1653, 2227, 2286
TseFI GTSAC 7 cut(s) 1082, 1232, 1246, 1255, 1942, 2000, 2048
TseI GCWGC 3 cut(s) 1188, 1241, 2357
Tsp45I GTSAC 7 cut(s) 1082, 1232, 1246, 1255, 1942, 2000, 2048
TspGWI ACGGA 5 cut(s) 444, 677, 1279, 1999, 2199
TspRI CASTG 5 cut(s) 345, 1091, 1653, 2227, 2286
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 2 cut(s) 326, 2100
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 7 cut(s) 465, 776, 821, 965, 1266, 1638, 2249
ZrmI AGTACT 1 cut(s) 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.