FvH4_4g26660

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009434
Physical Location & Seq
Reverse (-)
27973984 .. 27979128
5145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26660.t1

Sequence Viewer

Length: 2523 bp
ATGTCGTCCGCCTTCAACGGTGGCCAGACTGACGTCGAAGTAAAGCGAGTGTTCATAGGAGCAGGGTGCAACAGAATAGTGAACAACGTCTCATGGGGTGCTTGTGATTTAGTCGCTTTCGGCGCCCAAAACGCCGTCGCTGTTTTCGACCCAAAGACTGCTCAAATTTCGACTACGCTTCCGGGCCACAAGGCCTCTGTTAACTGCACCCAATGGCTTCCAAGTAATAAGTTTGCATTCAAAGCTAAAGACTTAGACCAACATTACTTGCTTTCTGGAGATGCTGGGGGTGCCATTATTTTGTGGGAGTATACTGTTCTTGAAGGAAAGTGGAGATACGTACTGCAAATACCTGAATTACACAAGAAGGGTGTCACATGCATTAGTGGGATTTTGGTTTCCGATACTGAGGCAGTCTTTGCTTCTACTTCGTCGGACGGTACAGTTTATATCTGGGAGGTTGTTTTCCCAACTACTGGTGGAGGTGACTGTAAATTATTGCATTTGGATTCTCTATTTGTTGGTTCAAAACCTATGGTAGCACTTTCACTAGCAGAGTTGCCTGGGAATACTGGGCATCTAGTCCTGGCCATGGGGGGATTGGATAACAAGATTCACCTATACTCTGGGGAGAGGAGAGGAAAGTTTGTTCGAGCCTGCGAGTTGAAAGGACATGCAGATTGGATCAGAAGCCTGGATTTCTCGTTACCTATTTTCAATAATGGTGAGGCACATAATATTCTACTTGTTAGTTCATCACAAGACAAAGGGATACGCATATGGAAGATGGCTCTACGGGGTTCTTTGGACAGCAGCCAGAGTTCCAAGCCAGGAAAAATAAGCTTAGCATCTTACATAGAAGGCCCTGTACTTGTCGCTGGAACAACCTCATATCAGATTTCACTGGAATCTCTTCTAATTGGTCATGAGGATTGGGTGTATTCAGTGGAGTGGCAACCACCTTCACCTGTATCTTCAGACGGGATTGCGTACTGTCAACACCAGAGCATCTTATCTGCATCTATGGATAAGACAATGATGATCTGGAAACCAGAAAAAACTTCTGGTATCTGGATGAATGTTGTTACTGTTGGGGAATTGAGTCATTGTGCTCTAGGATTTTATGGTGGCCACTGGAGTCCCAACGGAGATTCGATCTTAGCACATGGGTATGGTGGATCTTTCCATCTGTGGAGAAATGTCGGTACTGGCTTAGATAATTGGCAACCGCAAAAAGTTCCATCTGGGCATTTTGCAGCTATTACCGATATTGCTTGGGGGAGATCTGGTGAATACTTGCTGTCAGTCAGTGATGACCAGACAACACGAATTTTTTCTCCATGGCAAAATGAAACATCTCTAGGAGATGAGGGTTCTTGGCATGAAATTGCTCGTCCTCAAGTTCATGGTCATGATATGAACTGTGTCACCATCATCCAAGGAAAAGGAAACCATCGTTTTGTCAGTGGAGCCGATGAGAAAGTTGCCAGAGTGTTTGAAGCTCCTTTGTCTTTCTTGAAGACATTGGGTCATGCCATTTCACAAAACTCTACCTTTTCTGAAGATATTCAGTTGGGTGTACAGATATTGGGTGCAAATATGTCAGCTCTTGGGCTATCACAGAAACCTATTTATGTTCATGCTGAGCAGCACACCATAGAGAAGAATCCAAATGATAGCCTTGACACCCTTGAAGCTATTCCTGATGCGGTTCCTGTTGTGTTGACTGAACCTCCAATTGAAGATCAATTGGGATGGCATACACTATGGCCAGAATCACATAAGCTTTATGGTCACGGGAATGAGCTGTTTGCTCTTTGCAGTGATCATGAAGGGAAGCTTGTCGCTTCATCTTGTAAGGCCCAATCAGCAGCAGTTGCAGAAATATGGCTGTGGGAAGTTGGTTCCTGGAAAGCAGTTGGTCGCTTGCAGTCGCATAGTTTGACAGTTACACAAATGGAGTTCTCTCTTGATGACAAATTCCTGTTGGCAGTATCAAGGGATCGCCAGTTCTCTATATTTTCAATTGACAAAACAGGCACTGATGGCACTAGTTACAAGCTGGTAGCAAAGCACGAGGCACACAAAAGAATCATATGGTCATGTTCCTGGAATCCCCACGGCTATGAATTTGCAACAGGCTCAAGAGACAAGACGGTGAAGATCTGGACTGTTGGAAAGGATTCATCAGTTAAGCTGCTCATGACTCTCCCACAGTTCAGCAGTAGCGTCACATCCCTATCTTGGGCTGGTCTTGATTCCAAGAAAAATAATGGGGTTCTTGCAGTTGGAATGGAAAGCGGACTTATTGAATTGTGGAGTCTGTCTGTTAACAGAACCGATGATGGTGTAGCAGCAAATGTACTTGCTACTCTTGTAGCACGGTTTGATCCATTGATGTGCCATGTTTCTTCTGTGAGCCGTTTGGCGTGGAGAAAGCGCAAGAATAAAGATTGTACTAGCATACAGCTTGCCTCATGTGGAGCTGATCATTGTGTGAGAGTGTTCGAGGTAAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

841

Amino Acids

91.77

Weight (kDa)

6.24

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 24 - 154 2.5e-06 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 24 - 154 2.1e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 38 - 155 1.3e-06 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 38 - 154 1.4e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 87 - 271 5.8e-08 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 195 - 302 1.4e-07 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 304 - 501 1e-07 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 379 - 498 9.2e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 418 - 678 2.3e-11 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 595 - 725 8.7e-13 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 598 - 777 1.7e-16 WDR5 beta-propeller domain
WD40_Prp19 PF24814 598 - 775 1.2e-09 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 625 - 725 4.4e-06 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 627 - 777 2.5e-11 CDC20/Fizzy WD40 domain
WD40 PF00400 687 - 723 4.4e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 695 - 777 1.7e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AccB1I GGYRCC 2 cut(s) 122, 290
AccB7I CCANNNNNTGG 1 cut(s) 476
AccI GTMKAC 1 cut(s) 311
AciI CCGC 4 cut(s) 9, 1229, 1709, 2301
AclWI GGATC 4 cut(s) 692, 1186, 2010, 2384
AcoI YGGCCR 4 cut(s) 22, 588, 1129, 1769
AcsI RAATTY 4 cut(s) 165, 1329, 1979, 2129
AcuI CTGAAG 2 cut(s) 960, 1581
AcyI GRCGYC 2 cut(s) 33, 123
AfaI GTAC 8 cut(s) 342, 442, 870, 992, 1207, 1581, 2364, 2458
AfiI CCNNNNNNNGG 4 cut(s) 476, 592, 2244, 2245
AhdI GACNNNNNGTC 1 cut(s) 1527
AhlI ACTAGT 1 cut(s) 2051
AjnI CCWGG 6 cut(s) 562, 585, 693, 829, 1907, 2108
AloI GAACNNNNNNTCC 4 cut(s) 633, 665, 1994, 2026
Alw21I GWGCWC 1 cut(s) 1114
Alw26I GTCTC 2 cut(s) 94, 2142
AlwI GGATC 4 cut(s) 692, 1186, 2010, 2384
AlwNI CAGNNNCTG 1 cut(s) 2042
AoxI GGCC 8 cut(s) 22, 184, 192, 588, 862, 1129, 1769, 1860
ApeKI GCWGC 6 cut(s) 813, 1256, 1648, 1871, 2197, 2354
ApoI RAATTY 4 cut(s) 165, 1329, 1979, 2129
Asp700I GAANNNNTTC 5 cut(s) 912, 1333, 1566, 1698, 2182
AspLEI GCGC 2 cut(s) 125, 2442
AspS9I GGNCC 3 cut(s) 184, 863, 1861
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 7 cut(s) 497, 608, 737, 957, 1301, 1420, 2170
BalI TGGCCA 4 cut(s) 24, 590, 1131, 1771
BanI GGYRCC 2 cut(s) 122, 290
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BauI CACGAG 1 cut(s) 2075
BbsI GAAGAC 1 cut(s) 1526
Bbv12I GWGCWC 1 cut(s) 1114
BbvI GCAGC 6 cut(s) 825, 1268, 1660, 1883, 2184, 2366
BccI CCATC 8 cut(s) 781, 1194, 1249, 1439, 1461, 1749, 2039, 2339
BceAI ACGGC 3 cut(s) 119, 2137, 2406
BciT130I CCWGG 6 cut(s) 564, 587, 695, 831, 1909, 2110
BciVI GTATCC 1 cut(s) 765
BclI TGATCA 2 cut(s) 1825, 2488
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 94, 2142
BcuI ACTAGT 1 cut(s) 2051
BfaI CTAG 6 cut(s) 551, 581, 1115, 1361, 2052, 2460
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 765
BglII AGATCT 2 cut(s) 1283, 2163
BisI GCNGC 6 cut(s) 814, 1257, 1649, 1872, 2198, 2355
BlpI GCTNAGC 2 cut(s) 844, 1644
BlsI GCNGC 6 cut(s) 815, 1258, 1650, 1873, 2199, 2356
Bme1390I CCNGG 7 cut(s) 183, 564, 587, 695, 831, 1909, 2110
BmeRI GACNNNNNGTC 1 cut(s) 1527
BmgT120I GGNCC 3 cut(s) 184, 863, 1861
BmiI GGNNCC 5 cut(s) 124, 292, 1471, 1713, 1906
BmrFI CCNGG 7 cut(s) 183, 564, 587, 695, 831, 1909, 2110
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 6 cut(s) 271, 586, 857, 1017, 1028, 1696
BmuI ACTGGG 1 cut(s) 582
BoxI GACNNNNGTC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 1526
BpmI CTGGAG 2 cut(s) 297, 1156
Bpu1102I GCTNAGC 2 cut(s) 844, 1644
BpuEI CTTGAG 2 cut(s) 1383, 2128
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 33, 123
BsaJI CCNNGG 5 cut(s) 563, 591, 1340, 1438, 2119
BsaXI ACNNNNNCTCC 4 cut(s) 1273, 1303, 1717, 1747
Bsc4I CCNNNNNNNGG 4 cut(s) 476, 592, 2244, 2245
Bse1I ACTGG 6 cut(s) 481, 577, 909, 1139, 1213, 2008
BseBI CCWGG 6 cut(s) 564, 587, 695, 831, 1909, 2110
BseDI CCNNGG 5 cut(s) 563, 591, 1340, 1438, 2119
BseGI GGATG 4 cut(s) 1080, 1434, 1760, 2234
BseLI CCNNNNNNNGG 4 cut(s) 476, 592, 2244, 2245
BseMII CTCAG 2 cut(s) 399, 1635
BseNI ACTGG 6 cut(s) 481, 577, 909, 1139, 1213, 2008
BseRI GAGGAG 1 cut(s) 649
BseXI GCAGC 6 cut(s) 825, 1268, 1660, 1883, 2184, 2366
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 8 cut(s) 24, 186, 194, 590, 864, 1131, 1771, 1862
BshNI GGYRCC 2 cut(s) 122, 290
BsiHKAI GWGCWC 1 cut(s) 1114
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 1125
BslI CCNNNNNNNGG 4 cut(s) 476, 592, 2244, 2245
BsmAI GTCTC 2 cut(s) 94, 2142
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 1125
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 8 cut(s) 24, 186, 194, 590, 864, 1131, 1771, 1862
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp1407I TGTACA 1 cut(s) 1579
Bsp1720I GCTNAGC 2 cut(s) 844, 1644
Bsp19I CCATGG 2 cut(s) 591, 1340
BspACI CCGC 4 cut(s) 9, 1229, 1709, 2301
BspANI GGCC 8 cut(s) 24, 186, 194, 590, 864, 1131, 1771, 1862
BspCNI CTCAG 2 cut(s) 400, 1636
BspHI TCATGA 4 cut(s) 925, 1411, 1828, 2202
BspLI GGNNCC 5 cut(s) 124, 292, 1471, 1713, 1906
BspPI GGATC 4 cut(s) 692, 1186, 2010, 2384
BspT107I GGYRCC 2 cut(s) 122, 290
BsrGI TGTACA 1 cut(s) 1579
BsrI ACTGG 6 cut(s) 481, 577, 909, 1139, 1213, 2008
BssECI CCNNGG 5 cut(s) 563, 591, 1340, 1438, 2119
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 2 cut(s) 33, 123
BssSI CACGAG 1 cut(s) 2075
BssT1I CCWWGG 3 cut(s) 591, 1340, 1438
Bst1107I GTATAC 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 2075
Bst2UI CCWGG 6 cut(s) 564, 587, 695, 831, 1909, 2110
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 2 cut(s) 33, 123
BstAPI GCANNNNNTGC 2 cut(s) 419, 1877
BstAUI TGTACA 1 cut(s) 1579
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 658, 1928, 2472
BstDEI CTNAG 6 cut(s) 253, 408, 844, 1159, 1213, 1644
BstDSI CCRYGG 3 cut(s) 591, 1340, 2119
BstF5I GGATG 4 cut(s) 1080, 1434, 1760, 2234
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 2442
BstMAI GTCTC 2 cut(s) 94, 2142
BstMWI GCNNNNNNNGC 8 cut(s) 122, 131, 242, 290, 419, 1868, 1877, 2046
BstNI CCWGG 6 cut(s) 564, 587, 695, 831, 1909, 2110
BstNSI RCATGY 2 cut(s) 381, 677
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 7 cut(s) 181, 562, 585, 693, 829, 1907, 2108
BstSNI TACGTA 1 cut(s) 340
BstV1I GCAGC 6 cut(s) 825, 1268, 1660, 1883, 2184, 2366
BstV2I GAAGAC 1 cut(s) 1526
BstX2I RGATCY 3 cut(s) 1178, 1283, 2163
BstYI RGATCY 3 cut(s) 1178, 1283, 2163
BstZ17I GTATAC 1 cut(s) 312
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 8 cut(s) 24, 186, 194, 590, 864, 1131, 1771, 1862
BtgI CCRYGG 3 cut(s) 591, 1340, 2119
BtsCI GGATG 4 cut(s) 1080, 1434, 1760, 2234
BtsI GCAGTG 1 cut(s) 1828
BtsIMutI CAGTG 7 cut(s) 902, 951, 1132, 1315, 1471, 1828, 2040
Cac8I GCNNGC 3 cut(s) 658, 1928, 2472
CaiI CAGNNNCTG 1 cut(s) 2042
CciI TCATGA 4 cut(s) 925, 1411, 1828, 2202
CfoI GCGC 2 cut(s) 125, 2442
Cfr13I GGNCC 3 cut(s) 184, 863, 1861
CseI GACGC 1 cut(s) 2218
Csp6I GTAC 8 cut(s) 341, 441, 869, 991, 1206, 1580, 2363, 2457
CviQI GTAC 8 cut(s) 341, 441, 869, 991, 1206, 1580, 2363, 2457
DdeI CTNAG 6 cut(s) 253, 408, 844, 1159, 1213, 1644
DinI GGCGCC 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 1527
EaeI YGGCCR 4 cut(s) 22, 588, 1129, 1769
Eam1104I CTCTTC 1 cut(s) 918
Eam1105I GACNNNNNGTC 1 cut(s) 1527
EarI CTCTTC 1 cut(s) 918
Eco105I TACGTA 1 cut(s) 340
Eco130I CCWWGG 3 cut(s) 591, 1340, 1438
Eco147I AGGCCT 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 960, 1581
EcoO109I RGGNCCY 1 cut(s) 863
EcoRII CCWGG 6 cut(s) 562, 585, 693, 829, 1907, 2108
EcoT14I CCWWGG 3 cut(s) 591, 1340, 1438
EcoT22I ATGCAT 1 cut(s) 383
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 3 cut(s) 591, 1340, 1438
Esp3I CGTCTC 1 cut(s) 94
FalI AAGNNNNNCTT 2 cut(s) 1824, 1856
FaqI GGGAC 1 cut(s) 1125
FauNDI CATATG 2 cut(s) 779, 2096
FbaI TGATCA 2 cut(s) 1825, 2488
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 6 cut(s) 814, 1257, 1649, 1872, 2198, 2355
FokI GGATG 4 cut(s) 1087, 1421, 1767, 2221
Fsp4HI GCNGC 6 cut(s) 814, 1257, 1649, 1872, 2198, 2355
FspBI CTAG 6 cut(s) 551, 581, 1115, 1361, 2052, 2460
GlaI GCGC 2 cut(s) 124, 2441
GluI GCNGC 6 cut(s) 814, 1257, 1649, 1872, 2198, 2355
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 2 cut(s) 297, 1156
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 8 cut(s) 24, 186, 194, 590, 864, 1131, 1771, 1862
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 2218
HhaI GCGC 2 cut(s) 125, 2442
Hin1I GRCGYC 2 cut(s) 33, 123
Hin6I GCGC 2 cut(s) 123, 2440
HinP1I GCGC 2 cut(s) 123, 2440
HincII GTYRAC 4 cut(s) 202, 998, 1725, 2332
HindII GTYRAC 4 cut(s) 202, 998, 1725, 2332
HindIII AAGCTT 3 cut(s) 841, 1784, 1838
HpaI GTTAAC 2 cut(s) 202, 2332
HpaII CCGG 1 cut(s) 182
HphI GGTGA 7 cut(s) 497, 608, 737, 957, 1301, 1420, 2170
Hpy166II GTNNAC 7 cut(s) 82, 202, 312, 998, 1580, 1725, 2332
Hpy188I TCNGA 6 cut(s) 403, 436, 689, 897, 979, 1561
Hpy8I GTNNAC 7 cut(s) 82, 202, 312, 998, 1580, 1725, 2332
Hpy99I CGWCG 3 cut(s) 38, 140, 436
HpyAV CCTTC 6 cut(s) 22, 317, 361, 854, 972, 1826
HpyCH4IV ACGT 3 cut(s) 33, 87, 339
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 131, 242, 290, 419, 1868, 1877, 2046
HpyF3I CTNAG 6 cut(s) 253, 408, 844, 1159, 1213, 1644
HpySE526I ACGT 3 cut(s) 33, 87, 339
Hsp92I GRCGYC 2 cut(s) 33, 123
HspAI GCGC 2 cut(s) 123, 2440
KasI GGCGCC 1 cut(s) 122
Ksp22I TGATCA 2 cut(s) 1825, 2488
KspAI GTTAAC 2 cut(s) 202, 2332
LmnI GCTCC 4 cut(s) 59, 1469, 1507, 2483
Lsp1109I GCAGC 6 cut(s) 825, 1268, 1660, 1883, 2184, 2366
LweI GCATC 6 cut(s) 271, 586, 857, 1017, 1028, 1696
MaeI CTAG 6 cut(s) 551, 581, 1115, 1361, 2052, 2460
MaeII ACGT 3 cut(s) 33, 87, 339
MaeIII GTNAC 9 cut(s) 373, 485, 705, 1084, 1426, 1793, 1948, 2054, 2230
MboII GAAGA 9 cut(s) 796, 905, 966, 1531, 1574, 1675, 1754, 2173, 2403
MfeI CAATTG 3 cut(s) 1737, 1748, 2025
MflI RGATCY 3 cut(s) 1178, 1283, 2163
MhlI GDGCHC 1 cut(s) 1114
MlsI TGGCCA 4 cut(s) 24, 590, 1131, 1771
MluNI TGGCCA 4 cut(s) 24, 590, 1131, 1771
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 4 cut(s) 1111, 1147, 2200, 2329
MmeI TCCRAC 3 cut(s) 414, 2155, 2269
Mox20I TGGCCA 4 cut(s) 24, 590, 1131, 1771
Mph1103I ATGCAT 1 cut(s) 383
MroXI GAANNNNTTC 5 cut(s) 912, 1333, 1566, 1698, 2182
MscI TGGCCA 4 cut(s) 24, 590, 1131, 1771
MseI TTAA 4 cut(s) 201, 2193, 2331, 2521
MslI CAYNNNNRTG 5 cut(s) 1170, 1410, 1800, 2124, 2398
Msp20I TGGCCA 4 cut(s) 24, 590, 1131, 1771
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 7 cut(s) 183, 564, 587, 695, 831, 1909, 2110
MunI CAATTG 3 cut(s) 1737, 1748, 2025
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 6 cut(s) 564, 587, 695, 831, 1909, 2110
MwoI GCNNNNNNNGC 8 cut(s) 122, 131, 242, 290, 419, 1868, 1877, 2046
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 2 cut(s) 591, 1340
NdeI CATATG 2 cut(s) 779, 2096
NlaIV GGNNCC 5 cut(s) 124, 292, 1471, 1713, 1906
NmuCI GTSAC 5 cut(s) 373, 485, 1426, 1793, 2230
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 2 cut(s) 381, 677
PagI TCATGA 4 cut(s) 925, 1411, 1828, 2202
PceI AGGCCT 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 236
PdmI GAANNNNTTC 5 cut(s) 912, 1333, 1566, 1698, 2182
PflMI CCANNNNNTGG 1 cut(s) 476
PfoI TCCNGGA 2 cut(s) 1907, 2108
PkrI GCNGC 6 cut(s) 815, 1258, 1650, 1873, 2199, 2356
PleI GAGTC 4 cut(s) 1110, 1146, 2200, 2328
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 4 cut(s) 1110, 1146, 2200, 2328
Ppu21I YACGTR 1 cut(s) 340
PshAI GACNNNNGTC 1 cut(s) 32
Psp6I CCWGG 6 cut(s) 562, 585, 693, 829, 1907, 2108
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 6 cut(s) 562, 585, 693, 829, 1907, 2108
PspN4I GGNNCC 5 cut(s) 124, 292, 1471, 1713, 1906
PspPI GGNCC 3 cut(s) 184, 863, 1861
PstNI CAGNNNCTG 1 cut(s) 2042
PsuI RGATCY 3 cut(s) 1178, 1283, 2163
RsaI GTAC 8 cut(s) 342, 442, 870, 992, 1207, 1581, 2364, 2458
RsaNI GTAC 8 cut(s) 341, 441, 869, 991, 1206, 1580, 2363, 2457
RseI CAYNNNNRTG 5 cut(s) 1170, 1410, 1800, 2124, 2398
SaqAI TTAA 4 cut(s) 201, 2193, 2331, 2521
SatI GCNGC 6 cut(s) 814, 1257, 1649, 1872, 2198, 2355
Sau96I GGNCC 3 cut(s) 184, 863, 1861
SchI GAGTC 4 cut(s) 1111, 1147, 2200, 2329
ScrFI CCNGG 7 cut(s) 183, 564, 587, 695, 831, 1909, 2110
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 6 cut(s) 271, 586, 857, 1017, 1028, 1696
SfoI GGCGCC 1 cut(s) 124
SmiMI CAYNNNNRTG 5 cut(s) 1170, 1410, 1800, 2124, 2398
SmlI CTYRAG 2 cut(s) 1398, 2143
SmoI CTYRAG 2 cut(s) 1398, 2143
SnaBI TACGTA 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 2051
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 4 cut(s) 9, 1229, 1709, 2301
SspDI GGCGCC 1 cut(s) 122
SspI AATATT 1 cut(s) 739
SspMI CTAG 6 cut(s) 551, 581, 1115, 1361, 2052, 2460
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 7 cut(s) 181, 562, 585, 693, 829, 1907, 2108
StyI CCWWGG 3 cut(s) 591, 1340, 1438
TaiI ACGT 3 cut(s) 36, 90, 342
TaqI TCGA 6 cut(s) 36, 147, 170, 652, 1154, 2508
TatI WGTACW 4 cut(s) 868, 1579, 2362, 2456
Tru1I TTAA 4 cut(s) 201, 2193, 2331, 2521
Tru9I TTAA 4 cut(s) 201, 2193, 2331, 2521
TscAI CASTG 7 cut(s) 909, 951, 1139, 1315, 1471, 1828, 2047
TseFI GTSAC 5 cut(s) 373, 485, 1426, 1793, 2230
TseI GCWGC 6 cut(s) 813, 1256, 1648, 1871, 2197, 2354
Tsp45I GTSAC 5 cut(s) 373, 485, 1426, 1793, 2230
TspGWI ACGGA 1 cut(s) 1161
TspRI CASTG 7 cut(s) 909, 951, 1139, 1315, 1471, 1828, 2047
Van91I CCANNNNNTGG 1 cut(s) 476
XapI RAATTY 4 cut(s) 165, 1329, 1979, 2129
XceI RCATGY 2 cut(s) 381, 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 5 cut(s) 912, 1333, 1566, 1698, 2182
XspI CTAG 6 cut(s) 551, 581, 1115, 1361, 2052, 2460
ZraI GACGTC 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.