MD07G1142000.v1.1

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009434
Physical Location & Seq
Reverse (-)
20546918 .. 20548857
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1142000.v1.1.491

Sequence Viewer

Length: 924 bp
ATGTCTAGCGGAGATGGTCGAGGAGGAGGGCGTGGGGTTGGAGTGAAGGGAGTGTTCATAGGAGCAGGCTGCAACAGAATCGTCAACAACTGTTCGTGGGGTGCTTGTGATTTAGTCGCTTTCGGTGCCCAAAACGCCGTTGCTATCTTCAATCCCGAGACTGCTCAAATTTGGACTACGCTTCCAGGTCACAAGGCTGCTGTGAATTGCACGCAGTGGCTCCCAAGCAACAAGTTTGCATTCAGAGCAAAAAAGTTGGACCGGCATTATTTGCTCTCTGGAGATGCTGCTGGTGAAATTATTTTGTGGGAGTACTCTGTTCTTGAAGGAAAAGGTATAATCTTGTCGTTACCGTGGAGGTATGTGCAACAACTACCTCAGTTACACAAGAAGGGTGTCACATGCATAACTGGAATTATGGTTTCTCAAACTGAGGCAGTCTTTGCCTCTACGTCTTCCGATAGTATGGTTTTATATATGGGAGGTGTCTGTGAACTGTTGCATCTGGATTCTCTCTCTGTTGGTACAAAACCCATGGTAGCGCTTTCATTATCAGAGTTGCCTGGAAGTACTGGCACTTTAGTCCTGGCAATGGGAGGACTGGATAACAAAATTCACCTTTACAGCGGGAGAGAGGAGAGGAAAGGGTGCGAGTTGAAAGGGCATACAGATTGGATCAGAAGTCTGGATTTCGCATCATTACCTACGTGCACCAATGGTGAGGCAAGCAACGTACTACTTGTTAGTTCATCTCAAGACAGAGGCATACGCATATGGAAGATGGCTTTAAAGGAGTCTTTGGACAGCAACCAGAGTGCTTACCGGAAAGAAAAAGTAAAAGTAAGCTTAGCATCTTATATTGAAGGCCCTGTACTTATAGCTGGCACGACGTCATATATCAGATATCATTGGAATCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

308

Amino Acids

33.24

Weight (kDa)

8.72

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 28 - 269 2.7e-08 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 129 - 266 1e-06 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 195 - 270 1.8e-08 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 195 - 278 3.9e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 195 - 297 2.5e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 2 cut(s) 9, 627
AclWI GGATC 1 cut(s) 683
AcsI RAATTY 2 cut(s) 168, 612
AcyI GRCGYC 1 cut(s) 890
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 5 cut(s) 314, 526, 571, 735, 873
AfeI AGCGCT 1 cut(s) 543
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 4 cut(s) 151, 326, 658, 863
AjnI CCWGG 3 cut(s) 184, 562, 585
AluBI AGCT 2 cut(s) 846, 881
AluI AGCT 2 cut(s) 846, 881
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 709
AlwI GGATC 1 cut(s) 683
Ama87I CYCGRG 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 543
AoxI GGCC 1 cut(s) 865
ApaLI GTGCAC 1 cut(s) 709
ApeKI GCWGC 3 cut(s) 69, 197, 287
ApoI RAATTY 2 cut(s) 168, 612
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 259, 866
AsuHPI GGTGA 3 cut(s) 305, 608, 731
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 130, 713
BanI GGYRCC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 3 cut(s) 56, 184, 274
BccI CCATC 2 cut(s) 8, 775
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 3 cut(s) 186, 564, 587
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 3 cut(s) 70, 198, 288
BlpI GCTNAGC 1 cut(s) 847
BlsI GCNGC 3 cut(s) 71, 199, 289
BmcAI AGTACT 2 cut(s) 314, 571
Bme1390I CCNGG 3 cut(s) 186, 564, 587
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 259, 866
BmiI GGNNCC 2 cut(s) 127, 221
BmrFI CCNGG 3 cut(s) 186, 564, 587
BmsI GCATC 4 cut(s) 274, 511, 704, 860
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 847
BpuEI CTTGAG 1 cut(s) 738
BsaAI YACGTR 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 890
BsaJI CCNNGG 2 cut(s) 353, 534
BsaWI WCCGGW 1 cut(s) 822
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 415, 577, 606
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 3 cut(s) 186, 564, 587
BseDI CCNNGG 2 cut(s) 353, 534
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 2 cut(s) 392, 423
BseNI ACTGG 3 cut(s) 415, 577, 606
BseRI GAGGAG 3 cut(s) 36, 39, 650
BseSI GKGCMC 2 cut(s) 130, 713
BseXI GCAGC 3 cut(s) 56, 184, 274
BshFI GGCC 1 cut(s) 867
BshNI GGYRCC 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 713
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 262, 823
BslI CCNNNNNNNGG 1 cut(s) 592
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 867
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 130, 713
Bsp143I GATC 1 cut(s) 675
Bsp1720I GCTNAGC 1 cut(s) 847
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 2 cut(s) 9, 627
BspANI GGCC 1 cut(s) 867
BspCNI CTCAG 2 cut(s) 391, 424
BspLI GGNNCC 2 cut(s) 127, 221
BspPI GGATC 1 cut(s) 683
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 3 cut(s) 415, 577, 606
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 353, 534
BssMI GATC 1 cut(s) 675
BssNI GRCGYC 1 cut(s) 890
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 3 cut(s) 186, 564, 587
Bst4CI ACNGT 3 cut(s) 92, 354, 498
BstACI GRCGYC 1 cut(s) 890
BstAPI GCANNNNNTGC 2 cut(s) 271, 443
BstBAI YACGTR 1 cut(s) 708
BstC8I GCNNGC 4 cut(s) 67, 212, 727, 883
BstDEI CTNAG 3 cut(s) 378, 432, 847
BstDSI CCRYGG 2 cut(s) 353, 534
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 678
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 675
BstMWI GCNNNNNNNGC 5 cut(s) 125, 134, 245, 271, 443
BstNI CCWGG 3 cut(s) 186, 564, 587
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 3 cut(s) 184, 562, 585
BstSLI GKGCMC 2 cut(s) 130, 713
BstV1I GCAGC 3 cut(s) 56, 184, 274
BstV2I GAAGAC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 867
BtgI CCRYGG 2 cut(s) 353, 534
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 4 cut(s) 67, 212, 727, 883
CfoI GCGC 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 259, 866
Csp6I GTAC 5 cut(s) 313, 525, 570, 734, 872
CviAII CATG 2 cut(s) 402, 535
CviJI RGCY 7 cut(s) 69, 197, 220, 785, 846, 867, 881
CviKI_1 RGCY 7 cut(s) 69, 197, 220, 785, 846, 867, 881
CviQI GTAC 5 cut(s) 313, 525, 570, 734, 872
DdeI CTNAG 3 cut(s) 378, 432, 847
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
DraI TTTAAA 1 cut(s) 789
DraIII CACNNNGTG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 534
Eco32I GATATC 1 cut(s) 905
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 866
EcoRII CCWGG 3 cut(s) 184, 562, 585
EcoRV GATATC 1 cut(s) 905
EcoT14I CCWWGG 1 cut(s) 534
EcoT22I ATGCAT 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 2 cut(s) 405, 538
FatI CATG 2 cut(s) 401, 534
FauI CCCGC 1 cut(s) 620
FauNDI CATATG 1 cut(s) 773
Fnu4HI GCNGC 3 cut(s) 70, 198, 288
Fsp4HI GCNGC 3 cut(s) 70, 198, 288
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 543
GluI GCNGC 3 cut(s) 70, 198, 288
GsuI CTGGAG 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 1 cut(s) 867
HapII CCGG 2 cut(s) 262, 823
HhaI GCGC 1 cut(s) 544
Hin1I GRCGYC 1 cut(s) 890
Hin1II CATG 2 cut(s) 405, 538
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 844
HinfI GANTC 4 cut(s) 78, 509, 794, 913
HpaII CCGG 2 cut(s) 262, 823
HphI GGTGA 3 cut(s) 305, 608, 731
Hpy166II GTNNAC 3 cut(s) 85, 494, 711
Hpy188I TCNGA 5 cut(s) 245, 460, 556, 680, 902
Hpy188III TCNNGA 6 cut(s) 155, 279, 323, 506, 686, 755
Hpy8I GTNNAC 3 cut(s) 85, 494, 711
Hpy99I CGWCG 1 cut(s) 892
HpyAV CCTTC 4 cut(s) 40, 320, 385, 857
HpyCH4III ACNGT 3 cut(s) 92, 354, 498
HpyCH4IV ACGT 4 cut(s) 452, 707, 732, 890
HpyCH4V TGCA 7 cut(s) 72, 210, 239, 367, 405, 502, 711
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 134, 245, 271, 443
HpyF3I CTNAG 3 cut(s) 378, 432, 847
HpySE526I ACGT 4 cut(s) 452, 707, 732, 890
Hsp92I GRCGYC 1 cut(s) 890
Hsp92II CATG 2 cut(s) 405, 538
HspAI GCGC 1 cut(s) 542
Kzo9I GATC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 62, 225
Lsp1109I GCAGC 3 cut(s) 56, 184, 274
LweI GCATC 4 cut(s) 274, 511, 704, 860
MaeI CTAG 1 cut(s) 6
MaeII ACGT 4 cut(s) 452, 707, 732, 890
MaeIII GTNAC 4 cut(s) 188, 348, 381, 397
MalI GATC 1 cut(s) 677
MboI GATC 1 cut(s) 675
MboII GAAGA 4 cut(s) 139, 447, 790, 910
MhlI GDGCHC 2 cut(s) 130, 713
MluCI AATT 5 cut(s) 168, 205, 297, 414, 612
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 2 cut(s) 19, 237
Mph1103I ATGCAT 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 917
MseI TTAA 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 2 cut(s) 262, 823
MspR9I CCNGG 3 cut(s) 186, 564, 587
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 3 cut(s) 186, 564, 587
MwoI GCNNNNNNNGC 5 cut(s) 125, 134, 245, 271, 443
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 773
NdeII GATC 1 cut(s) 675
NlaIII CATG 2 cut(s) 405, 538
NlaIV GGNNCC 2 cut(s) 127, 221
NmuCI GTSAC 2 cut(s) 188, 397
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 1 cut(s) 405
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 3 cut(s) 78, 509, 913
PkrI GCNGC 3 cut(s) 71, 199, 289
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
Ppu21I YACGTR 1 cut(s) 708
Psp6I CCWGG 3 cut(s) 184, 562, 585
PspGI CCWGG 3 cut(s) 184, 562, 585
PspN4I GGNNCC 2 cut(s) 127, 221
PspPI GGNCC 2 cut(s) 259, 866
RsaI GTAC 5 cut(s) 314, 526, 571, 735, 873
RsaNI GTAC 5 cut(s) 313, 525, 570, 734, 872
SaqAI TTAA 1 cut(s) 788
SatI GCNGC 3 cut(s) 70, 198, 288
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 2 cut(s) 259, 866
ScaI AGTACT 2 cut(s) 314, 571
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 3 cut(s) 186, 564, 587
SduI GDGCHC 2 cut(s) 130, 713
SfaNI GCATC 4 cut(s) 274, 511, 704, 860
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 753
SmoI CTYRAG 1 cut(s) 753
Sse9I AATT 5 cut(s) 168, 205, 297, 414, 612
SsiI CCGC 2 cut(s) 9, 627
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 184, 562, 585
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 92, 354, 498
TaiI ACGT 4 cut(s) 455, 710, 735, 893
TaqI TCGA 1 cut(s) 19
TasI AATT 5 cut(s) 168, 205, 297, 414, 612
TatI WGTACW 3 cut(s) 312, 569, 871
TfiI GAWTC 3 cut(s) 78, 509, 913
Tru1I TTAA 1 cut(s) 788
Tru9I TTAA 1 cut(s) 788
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 2 cut(s) 188, 397
TseI GCWGC 3 cut(s) 69, 197, 287
Tsp45I GTSAC 2 cut(s) 188, 397
TspDTI ATGAA 3 cut(s) 46, 537, 738
TspRI CASTG 1 cut(s) 221
VneI GTGCAC 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 2 cut(s) 168, 612
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 1 cut(s) 6
ZraI GACGTC 1 cut(s) 891
ZrmI AGTACT 2 cut(s) 314, 571
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.