Rroxscaffold_5G00375730

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009434
Physical Location & Seq
Reverse (-)
56497496 .. 56502256
4761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375730.1

Sequence Viewer

Length: 2349 bp
ATGTCCACCGTCGGCGGTGGCCGGAGTGAGGTTGAAGTAAAGCGAGTGTTCATAGGAGCAGGGTGCAACAGAGTAGTGAACAACGTCTCATGGGGCGCTTGTGATTTAGTCGCGTTCGGCGCCCAAAACGCCGTCGCTATTTTCGACCCAAAGACTGCTCAAATTTCGACTACGCTTCCGGGTCACAAGGTCTCTGTTAATTGCACCCAATGGCTTCCAAGTAATAAGTTTGCATTCAAAGCTAAAGGCTTGGACCGACATTATTTGCTCTCTGGAGATGCTGGGGGTGCCATTATTTTGTGGGAGTATTCTGTTCTTGAAGGAAAGTGGAGATATGTATTGCAAATACCTGAATTACACAAGAAGGGTGTCACATGCATTAGTGGAATTATGGTTTCTGAAACTGAGGCAGTCTTTGCGTCTACTTCATCGGACGGTACAGTTTATTTATGGGAGGTTGTTTTCCCATCTACTGGTGAAGGTGACTGTAAATTATTGCATTTGGATTCTCTATTTGTTGGTTCAAAACCAATGGTAGCACTTTCACTAGCAGAGTTGCCTGGAAATGCTGGGCATTTAGTCCTGGCCATGGGGGGATTGGATAACAACATCCACCTCTACTCTGGGGAGAGGAGAGGAAAGTTTGTTCGAGCCTGCGAGTTGAAAGGGCATACAGATTGGATCAGAAGTCTGGATTTCTCATTACCTATATGCACTGATGGTGAGGCACATAGTATTCTACTTGTTAGTTCATCACAAGACAAAGGCATACGCATATGGAAGATGGCTTTACGGGATTCTTTGGACAGCAGCCAGAGTTCCAGGCAAGGAAAAATAAGCTTAGCATCTTACATAGAAGGCCCTGTACTTGTAGCTGGAATAACCTCGTATCAGATTTCGCTGGAATCTCTTCTAATTGGTCATGAGGATTGGGTGTATTCAGTGGAGTGGCAACCTCCGTCACCTGTATCTTCAGAAGGGATTGCCTACCGTCAACACCACAGCATCTTATCTGCATCTATGGATAAGACAATGATGATCTGGAAACCAGAAAAACTTCTGACGACACGAATTTTTTCTCCGTGGCAAAATGAAACATCTGTAGGAGATGAGGGTTCTTGGCATGAAATTGCTCGTCCTCAAGTTCATGGTCATGATATGAACTGTGCCACCATCATCCAAGGAAAAGGAAACCATCGTTTTGTCAGTGGAGCCGATGAGAAAGTTGCCAGAGTGTTTGAAGCTCCTTTGTCTTTCTTGAAGACATTGGGTCATGCCATTTCACAAAACTATACCTTTTCCGAAGATATACAATTGGGTGTACAGATTTTGGGTGCAAATATGTCAGCTCTTGGGCTATCACAGAAACCTATTTATGTTCATGCTGAGCAGCACACCATAGAGAAGAATCCAAATGATAGCCTTGACACCCTTGAAGCCATTCCTGATGCAGTTCCTGTTGTGTTGACTGAACCTCCGATCGAAGATCAATTGGGATGGCATACACTATGGCCAGAATCACACAAGCTTTATGGTCATGGGAACGAGCTGTTTGCTCTTTGCAGTGATCATGAAGGGAAGCTTGTTGCTTCGTCATGTAAGGCCCAATCAGCAGCAGTCGCAGAAATATGGCTGTGGCAAGTTGGTTCCTGGAAAGCAGTTGGTCGCTTGCAGTCTCATAGCTTGACTGTTACACAAATGGAATTCTCTCTTGATGACAAATTCCTGTTGGCTGTATCTAGGGATCGCCAGTTCTCTGTATTTTCAATTGACAAAACAGGATTTGTTCTTTTTGAAGTTCTAAGTAACAGCTTATATGAAGTACTGAACAGTGGCTTTTCATCTTTAACTTTTCGACGAAAAAGCACTGATGAAACTAGTTACAAGCTGGTAGCAAAGCACGAGGCACACAAAAGAATCATATGGTCATGTTCCTGGAATCCCCGCGGCTATGAATTTGCAACAGGCTCGAGGGACAAGACTGTGAAGATCTGGACTTTTGAAAAAGATTCATCAGTTAAGCTGCTCGCGACTCTGCCACAGTTCAGCAGTAGCGTTACAGCACTATCGTGGGCTAGTCTTGATTCCAAGAAAAATAATGGATTGCTTGCAGTTGGAATGGAAAACGGACTCATTGAATTGTGGAGTCTCTCTGTTAACAGAACCGACGATGGTCTAGCAGCAGGTGTACTTGCAGCTCTCGTTGCACGGTTTGATCCATTGATGTGCCATGTTTCTTCTGTGAGCCGTTTGGCGTGGAGAAAGCGCAAGTGTGAAGGTTGCAGTAGCATACAGCTTGCTTCTTGTGGAGCTGATCATTGTGCGAGGGTGTTCGAGGTAAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

782

Amino Acids

85.94

Weight (kDa)

6.39

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 22 - 153 3.4e-06 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 23 - 153 5.4e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 37 - 153 3e-06 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 37 - 153 1.4e-06 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 86 - 280 9e-09 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 194 - 415 3.3e-10 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 194 - 297 6.1e-06 WDR3 first beta-propeller domain
Beta-prop_WDR3_1st PF25173 509 - 592 6e-07 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 512 - 721 7.5e-15 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 608 - 718 8.2e-10 CDC20/Fizzy WD40 domain
WD40 PF00400 629 - 665 1.2e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 637 - 719 1.8e-10 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2174
Acc36I ACCTGC 1 cut(s) 2174
AccB1I GGYRCC 2 cut(s) 119, 287
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 1 cut(s) 422
AccII CGCG 3 cut(s) 113, 1947, 2030
AciI CCGC 3 cut(s) 15, 1945, 1947
AclWI GGATC 3 cut(s) 689, 1752, 2210
AcoI YGGCCR 3 cut(s) 19, 585, 1511
AcsI RAATTY 5 cut(s) 162, 1071, 1703, 1721, 1955
AcuI CTGAAG 1 cut(s) 957
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 5 cut(s) 439, 867, 1323, 1824, 2190
AfiI CCNNNNNNNGG 3 cut(s) 28, 473, 589
AhdI GACNNNNNGTC 1 cut(s) 1269
AhlI ACTAGT 1 cut(s) 1877
AjnI CCWGG 5 cut(s) 559, 582, 821, 1649, 1934
AleI CACNNNNGTG 1 cut(s) 2068
AloI GAACNNNNNNTCC 4 cut(s) 630, 662, 1736, 1768
Alw26I GTCTC 4 cut(s) 91, 196, 1680, 2153
AlwI GGATC 3 cut(s) 689, 1752, 2210
AlwNI CAGNNNCTG 1 cut(s) 1457
Ama87I CYCGRG 1 cut(s) 1969
AoxI GGCC 5 cut(s) 19, 585, 859, 1511, 1602
ApeKI GCWGC 6 cut(s) 810, 1390, 1613, 2023, 2180, 2195
ApoI RAATTY 5 cut(s) 162, 1071, 1703, 1721, 1955
Asp700I GAANNNNTTC 4 cut(s) 909, 1056, 1075, 1440
AspLEI GCGC 3 cut(s) 98, 122, 2268
AspS9I GGNCC 3 cut(s) 253, 860, 1603
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 488, 494, 734, 954
AvaI CYCGRG 1 cut(s) 1969
AvaII GGWCC 1 cut(s) 253
BalI TGGCCA 2 cut(s) 587, 1513
BanI GGYRCC 2 cut(s) 119, 287
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BauI CACGAG 1 cut(s) 1901
BbsI GAAGAC 1 cut(s) 1268
BbvI GCAGC 6 cut(s) 822, 1402, 1625, 2010, 2192, 2207
BccI CCATC 7 cut(s) 475, 713, 778, 1181, 1203, 1491, 2165
BceAI ACGGC 2 cut(s) 116, 2232
BcgI CGANNNNNNTGC 4 cut(s) 1535, 1569, 1950, 1984
BciT130I CCWGG 5 cut(s) 561, 584, 823, 1651, 1936
BclI TGATCA 2 cut(s) 1567, 2314
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 4 cut(s) 91, 196, 1680, 2153
BcuI ACTAGT 1 cut(s) 1877
BfaI CTAG 5 cut(s) 548, 1740, 1878, 2076, 2177
BfmI CTRYAG 1 cut(s) 1101
BfoI RGCGCY 2 cut(s) 99, 123
BfuAI ACCTGC 1 cut(s) 2174
BglII AGATCT 1 cut(s) 1989
BisI GCNGC 7 cut(s) 811, 1391, 1614, 1948, 2024, 2181, 2196
BlpI GCTNAGC 2 cut(s) 841, 1386
BlsI GCNGC 7 cut(s) 812, 1392, 1615, 1949, 2025, 2182, 2197
BmcAI AGTACT 1 cut(s) 1824
Bme1390I CCNGG 6 cut(s) 180, 561, 584, 823, 1651, 1936
Bme18I GGWCC 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 1269
BmeT110I CYCGRG 1 cut(s) 1969
BmgT120I GGNCC 3 cut(s) 253, 860, 1603
BmiI GGNNCC 4 cut(s) 121, 289, 1213, 1648
BmrFI CCNGG 6 cut(s) 180, 561, 584, 823, 1651, 1936
BmsI GCATC 5 cut(s) 268, 854, 1014, 1025, 1438
BoxI GACNNNNGTC 1 cut(s) 2172
BpiI GAAGAC 1 cut(s) 1268
BpmI CTGGAG 1 cut(s) 294
Bpu1102I GCTNAGC 2 cut(s) 841, 1386
BpuEI CTTGAG 1 cut(s) 1125
BpuMI CCSGG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 4 cut(s) 588, 1082, 1180, 1945
BsaXI ACNNNNNCTCC 2 cut(s) 1459, 1489
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 473, 589
Bse1I ACTGG 2 cut(s) 478, 1750
BseBI CCWGG 5 cut(s) 561, 584, 823, 1651, 1936
BseDI CCNNGG 4 cut(s) 588, 1082, 1180, 1945
BseGI GGATG 3 cut(s) 609, 1176, 1502
BseLI CCNNNNNNNGG 3 cut(s) 28, 473, 589
BseMII CTCAG 2 cut(s) 396, 1377
BseNI ACTGG 2 cut(s) 478, 1750
BseRI GAGGAG 1 cut(s) 646
BseXI GCAGC 6 cut(s) 822, 1402, 1625, 2010, 2192, 2207
BseYI CCCAGC 2 cut(s) 281, 569
Bsh1236I CGCG 3 cut(s) 113, 1947, 2030
Bsh1285I CGRYCG 1 cut(s) 1482
BshFI GGCC 5 cut(s) 21, 587, 861, 1513, 1604
BshNI GGYRCC 2 cut(s) 119, 287
BsiEI CGRYCG 1 cut(s) 1482
BsiHKCI CYCGRG 1 cut(s) 1969
BsiSI CCGG 2 cut(s) 22, 179
BslFI GGGAC 1 cut(s) 1988
BslI CCNNNNNNNGG 3 cut(s) 28, 473, 589
BsmAI GTCTC 4 cut(s) 91, 196, 1680, 2153
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 1988
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 5 cut(s) 21, 587, 861, 1513, 1604
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 1969
Bsp1407I TGTACA 1 cut(s) 1321
Bsp143I GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
Bsp1720I GCTNAGC 2 cut(s) 841, 1386
Bsp19I CCATGG 1 cut(s) 588
Bsp68I TCGCGA 1 cut(s) 2030
BspACI CCGC 3 cut(s) 15, 1945, 1947
BspANI GGCC 5 cut(s) 21, 587, 861, 1513, 1604
BspCNI CTCAG 2 cut(s) 397, 1378
BspFNI CGCG 3 cut(s) 113, 1947, 2030
BspHI TCATGA 3 cut(s) 922, 1153, 1570
BspLI GGNNCC 4 cut(s) 121, 289, 1213, 1648
BspMI ACCTGC 1 cut(s) 2174
BspPI GGATC 3 cut(s) 689, 1752, 2210
BspT107I GGYRCC 2 cut(s) 119, 287
BspTNI GGTCTC 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 1321
BsrI ACTGG 2 cut(s) 478, 1750
BssECI CCNNGG 4 cut(s) 588, 1082, 1180, 1945
BssMI GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 1901
BssT1I CCWWGG 2 cut(s) 588, 1180
Bst2BI CACGAG 1 cut(s) 1901
Bst2UI CCWGG 5 cut(s) 561, 584, 823, 1651, 1936
Bst6I CTCTTC 1 cut(s) 915
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 1321
BstC8I GCNNGC 5 cut(s) 655, 1670, 2028, 2109, 2298
BstDEI CTNAG 4 cut(s) 405, 841, 1386, 1802
BstDSI CCRYGG 3 cut(s) 588, 1082, 1945
BstF5I GGATG 3 cut(s) 609, 1176, 1502
BstFNI CGCG 3 cut(s) 113, 1947, 2030
BstH2I RGCGCY 2 cut(s) 99, 123
BstHHI GCGC 3 cut(s) 98, 122, 2268
BstKTI GATC 9 cut(s) 684, 1041, 1482, 1489, 1570, 1747, 1992, 2218, 2317
BstMAI GTCTC 4 cut(s) 91, 196, 1680, 2153
BstMBI GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
BstMCI CGRYCG 1 cut(s) 1482
BstMWI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1610, 1619, 2204
BstNI CCWGG 5 cut(s) 561, 584, 823, 1651, 1936
BstNSI RCATGY 1 cut(s) 378
BstPAI GACNNNNGTC 1 cut(s) 2172
BstSCI CCNGG 6 cut(s) 178, 559, 582, 821, 1649, 1934
BstSFI CTRYAG 1 cut(s) 1101
BstUI CGCG 3 cut(s) 113, 1947, 2030
BstV1I GCAGC 6 cut(s) 822, 1402, 1625, 2010, 2192, 2207
BstV2I GAAGAC 1 cut(s) 1268
BstX2I RGATCY 1 cut(s) 1989
BstYI RGATCY 1 cut(s) 1989
BsuRI GGCC 5 cut(s) 21, 587, 861, 1513, 1604
BtgI CCRYGG 3 cut(s) 588, 1082, 1945
BtsCI GGATG 3 cut(s) 609, 1176, 1502
BtsI GCAGTG 1 cut(s) 1570
BtsIMutI CAGTG 6 cut(s) 714, 948, 1213, 1570, 1837, 1866
BtuMI TCGCGA 1 cut(s) 2030
BveI ACCTGC 1 cut(s) 2174
Cac8I GCNNGC 5 cut(s) 655, 1670, 2028, 2109, 2298
CaiI CAGNNNCTG 1 cut(s) 1457
CciI TCATGA 3 cut(s) 922, 1153, 1570
CfoI GCGC 3 cut(s) 98, 122, 2268
Cfr13I GGNCC 3 cut(s) 253, 860, 1603
Cfr42I CCGCGG 1 cut(s) 1948
CseI GACGC 1 cut(s) 408
Csp6I GTAC 5 cut(s) 438, 866, 1322, 1823, 2189
CviQI GTAC 5 cut(s) 438, 866, 1322, 1823, 2189
DdeI CTNAG 4 cut(s) 405, 841, 1386, 1802
DinI GGCGCC 1 cut(s) 121
DpnI GATC 9 cut(s) 683, 1040, 1481, 1488, 1569, 1746, 1991, 2217, 2316
DpnII GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
DriI GACNNNNNGTC 1 cut(s) 1269
EaeI YGGCCR 3 cut(s) 19, 585, 1511
Eam1104I CTCTTC 1 cut(s) 915
Eam1105I GACNNNNNGTC 1 cut(s) 1269
EarI CTCTTC 1 cut(s) 915
Eco130I CCWWGG 2 cut(s) 588, 1180
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 1969
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 1703
EcoRII CCWGG 5 cut(s) 559, 582, 821, 1649, 1934
EcoT14I CCWWGG 2 cut(s) 588, 1180
EcoT22I ATGCAT 1 cut(s) 380
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 588, 1180
Esp3I CGTCTC 1 cut(s) 91
FalI AAGNNNNNCTT 2 cut(s) 1566, 1598
FaqI GGGAC 1 cut(s) 1988
FauI CCCGC 1 cut(s) 1952
FauNDI CATATG 2 cut(s) 776, 1922
FbaI TGATCA 2 cut(s) 1567, 2314
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 7 cut(s) 811, 1391, 1614, 1948, 2024, 2181, 2196
FokI GGATG 3 cut(s) 596, 1163, 1509
Fsp4HI GCNGC 7 cut(s) 811, 1391, 1614, 1948, 2024, 2181, 2196
FspBI CTAG 5 cut(s) 548, 1740, 1878, 2076, 2177
GlaI GCGC 3 cut(s) 97, 121, 2267
GluI GCNGC 7 cut(s) 811, 1391, 1614, 1948, 2024, 2181, 2196
GsaI CCCAGC 2 cut(s) 285, 573
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 2 cut(s) 99, 123
HaeIII GGCC 5 cut(s) 21, 587, 861, 1513, 1604
HapII CCGG 2 cut(s) 22, 179
HgaI GACGC 1 cut(s) 408
HhaI GCGC 3 cut(s) 98, 122, 2268
Hin1I GRCGYC 1 cut(s) 120
Hin6I GCGC 3 cut(s) 96, 120, 2266
HinP1I GCGC 3 cut(s) 96, 120, 2266
HincII GTYRAC 3 cut(s) 995, 1467, 2158
HindII GTYRAC 3 cut(s) 995, 1467, 2158
HindIII AAGCTT 3 cut(s) 838, 1526, 1580
HpaI GTTAAC 1 cut(s) 2158
HpaII CCGG 2 cut(s) 22, 179
HphI GGTGA 4 cut(s) 488, 494, 734, 954
Hpy166II GTNNAC 8 cut(s) 6, 79, 423, 995, 1322, 1467, 2158, 2189
Hpy188I TCNGA 8 cut(s) 400, 433, 686, 894, 976, 1062, 1303, 1479
Hpy8I GTNNAC 8 cut(s) 6, 79, 423, 995, 1322, 1467, 2158, 2189
Hpy99I CGWCG 4 cut(s) 14, 137, 1860, 2171
HpyAV CCTTC 7 cut(s) 314, 358, 473, 851, 971, 1568, 2270
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1610, 1619, 2204
HpyF3I CTNAG 4 cut(s) 405, 841, 1386, 1802
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 120
HspAI GCGC 3 cut(s) 96, 120, 2266
KasI GGCGCC 1 cut(s) 119
Ksp22I TGATCA 2 cut(s) 1567, 2314
KspAI GTTAAC 1 cut(s) 2158
KspI CCGCGG 1 cut(s) 1948
Kzo9I GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
LmnI GCTCC 4 cut(s) 56, 1211, 1249, 2309
Lsp1109I GCAGC 6 cut(s) 822, 1402, 1625, 2010, 2192, 2207
LweI GCATC 5 cut(s) 268, 854, 1014, 1025, 1438
MaeI CTAG 5 cut(s) 548, 1740, 1878, 2076, 2177
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 8 cut(s) 182, 370, 482, 960, 1690, 1805, 1880, 2056
MalI GATC 9 cut(s) 683, 1040, 1481, 1488, 1569, 1746, 1991, 2217, 2316
MboI GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
MboII GAAGA 9 cut(s) 793, 902, 963, 1273, 1316, 1417, 1496, 1999, 2229
MfeI CAATTG 3 cut(s) 1313, 1490, 1767
MflI RGATCY 1 cut(s) 1989
MlsI TGGCCA 2 cut(s) 587, 1513
MluNI TGGCCA 2 cut(s) 587, 1513
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 3 cut(s) 2026, 2124, 2155
MmeI TCCRAC 1 cut(s) 2095
Mox20I TGGCCA 2 cut(s) 587, 1513
Mph1103I ATGCAT 1 cut(s) 380
MroXI GAANNNNTTC 4 cut(s) 909, 1056, 1075, 1440
MscI TGGCCA 2 cut(s) 587, 1513
MseI TTAA 5 cut(s) 198, 1847, 2019, 2157, 2347
MslI CAYNNNNRTG 3 cut(s) 1152, 2068, 2224
Msp20I TGGCCA 2 cut(s) 587, 1513
MspA1I CMGCKG 1 cut(s) 1947
MspI CCGG 2 cut(s) 22, 179
MspR9I CCNGG 6 cut(s) 180, 561, 584, 823, 1651, 1936
MunI CAATTG 3 cut(s) 1313, 1490, 1767
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 5 cut(s) 561, 584, 823, 1651, 1936
MvnI CGCG 3 cut(s) 113, 1947, 2030
MwoI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1610, 1619, 2204
NarI GGCGCC 1 cut(s) 120
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 588
NdeI CATATG 2 cut(s) 776, 1922
NdeII GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
NlaIV GGNNCC 4 cut(s) 121, 289, 1213, 1648
NmuCI GTSAC 4 cut(s) 182, 370, 482, 960
NruI TCGCGA 1 cut(s) 2030
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 2068
PaeR7I CTCGAG 1 cut(s) 1969
PagI TCATGA 3 cut(s) 922, 1153, 1570
PaqCI CACCTGC 1 cut(s) 2174
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 233
PdmI GAANNNNTTC 4 cut(s) 909, 1056, 1075, 1440
PfeI GAWTC 9 cut(s) 506, 797, 905, 1408, 1517, 1917, 1939, 2009, 2084
PflMI CCANNNNNTGG 1 cut(s) 473
PfoI TCCNGGA 2 cut(s) 1649, 1934
PkrI GCNGC 7 cut(s) 812, 1392, 1615, 1949, 2025, 2182, 2197
Ple19I CGATCG 1 cut(s) 1482
PleI GAGTC 3 cut(s) 2026, 2124, 2154
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 3 cut(s) 2026, 2124, 2154
PshAI GACNNNNGTC 1 cut(s) 2172
Psp6I CCWGG 5 cut(s) 559, 582, 821, 1649, 1934
PspFI CCCAGC 2 cut(s) 281, 569
PspGI CCWGG 5 cut(s) 559, 582, 821, 1649, 1934
PspN4I GGNNCC 4 cut(s) 121, 289, 1213, 1648
PspPI GGNCC 3 cut(s) 253, 860, 1603
PspXI VCTCGAGB 1 cut(s) 1969
PstNI CAGNNNCTG 1 cut(s) 1457
PsuI RGATCY 1 cut(s) 1989
PvuI CGATCG 1 cut(s) 1482
RruI TCGCGA 1 cut(s) 2030
RsaI GTAC 5 cut(s) 439, 867, 1323, 1824, 2190
RsaNI GTAC 5 cut(s) 438, 866, 1322, 1823, 2189
RseI CAYNNNNRTG 3 cut(s) 1152, 2068, 2224
SacII CCGCGG 1 cut(s) 1948
SaqAI TTAA 5 cut(s) 198, 1847, 2019, 2157, 2347
SatI GCNGC 7 cut(s) 811, 1391, 1614, 1948, 2024, 2181, 2196
Sau3AI GATC 9 cut(s) 681, 1038, 1479, 1486, 1567, 1744, 1989, 2215, 2314
Sau96I GGNCC 3 cut(s) 253, 860, 1603
ScaI AGTACT 1 cut(s) 1824
SchI GAGTC 3 cut(s) 2026, 2124, 2155
ScrFI CCNGG 6 cut(s) 180, 561, 584, 823, 1651, 1936
SfaNI GCATC 5 cut(s) 268, 854, 1014, 1025, 1438
SfcI CTRYAG 1 cut(s) 1101
SfoI GGCGCC 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 1969
Sfr303I CCGCGG 1 cut(s) 1948
SgrBI CCGCGG 1 cut(s) 1948
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 1969
SmiMI CAYNNNNRTG 3 cut(s) 1152, 2068, 2224
SmlI CTYRAG 2 cut(s) 1140, 1969
SmoI CTYRAG 2 cut(s) 1140, 1969
SpeI ACTAGT 1 cut(s) 1877
SsiI CCGC 3 cut(s) 15, 1945, 1947
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 5 cut(s) 548, 1740, 1878, 2076, 2177
StyD4I CCNGG 6 cut(s) 178, 559, 582, 821, 1649, 1934
StyI CCWWGG 2 cut(s) 588, 1180
TaiI ACGT 1 cut(s) 87
TaqI TCGA 7 cut(s) 144, 167, 649, 1482, 1855, 1970, 2334
TaqII GACCGA 1 cut(s) 270
TatI WGTACW 4 cut(s) 865, 1321, 1822, 2188
TauI GCSGC 1 cut(s) 1950
TfiI GAWTC 9 cut(s) 506, 797, 905, 1408, 1517, 1917, 1939, 2009, 2084
Tru1I TTAA 5 cut(s) 198, 1847, 2019, 2157, 2347
Tru9I TTAA 5 cut(s) 198, 1847, 2019, 2157, 2347
TscAI CASTG 6 cut(s) 721, 948, 1213, 1570, 1837, 1873
TseFI GTSAC 4 cut(s) 182, 370, 482, 960
TseI GCWGC 6 cut(s) 810, 1390, 1613, 2023, 2180, 2195
Tsp45I GTSAC 4 cut(s) 182, 370, 482, 960
TspGWI ACGGA 3 cut(s) 948, 1071, 2142
TspRI CASTG 6 cut(s) 721, 948, 1213, 1570, 1837, 1873
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 5 cut(s) 162, 1071, 1703, 1721, 1955
XceI RCATGY 1 cut(s) 378
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 620
XhoI CTCGAG 1 cut(s) 1969
XmiI GTMKAC 1 cut(s) 422
XmnI GAANNNNTTC 4 cut(s) 909, 1056, 1075, 1440
XspI CTAG 5 cut(s) 548, 1740, 1878, 2076, 2177
ZrmI AGTACT 1 cut(s) 1824
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.