RLG00000006677

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009434
Physical Location & Seq
Forward (+)
9574907 .. 9580060
5154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006677

Sequence Viewer

Length: 2520 bp
ATGTCCACCGTCGGCGGTGGCCGGAGTGAGGTTGAAGTAAAGCGAGTGTTCATAGGAGCAGGGTGCAACAGAGTAGTGAACAACGTCTCATGGGGCGCTTGTGATTTAGTCGCGTTCGGCGCCCAAAACGCCGTCGCTATTTTCGACCCAAAGACTGCTCAAATTTCGACTACGCTTCCGGGTCACAAGGCTTCTGTTAATTGCACCCAATGGCTTCCAAGTAATAAGTTTGCATTCAAAGCTAAAGGCTTGGACCGACATTATTTGCTCTCTGGAGATGCTGGGGGTGCCATTATTTTGTGGGAGTATTCTGTTCTTGAAGGAAAGTGGAGATATGTATTGCAAATACCTGACTTACACAAGAAGGGTGTCACATGCATCAGTGGAATTATGGTTTCTGAAACTGAGGCAGTCTTTGCTTCTACTTCATCGGATGGTACAGTTTATTTATGGGAGGTTGTTTTCCCATCTACTGGTGAAGGAGACTGTAAATTATTGCATTTGGATTCTCTATTTGTTGGTTCAAAACCAATGGTAGCACTTTCACTAGCAGAGTTGCCTGGGAATGCTGGGCATTTAGTCCTGGCCATGGGGGGATTGGATAACAAGATCCACCTATACTCTGGGGAGAGGAGAGGAAAGTTTGTTCGAGCCTGCGAGTTGAAAGGGCATACAGATTGGATCAGAAGTCTGGATTTCTCATTGCCTATATGCACTGATGGTGAGGCACATAGTATTCTACTTGTTAGTTCATCACAAGACAAAGGCATACGCATATGGAAGATGGCTTTACGGGGTTCTTTGGACAGCAGCCAGAGTTCCGGGCAAGGAAAAATAAGCTTAGCATCTTACATAGAAGGCCCTGTACTTGTAGCTGGAACAACCTCGTATCAGATTTCACTGGAATCTCTTCTAATTGGTCATGAGGATTGGGTGTATTCAGTGGAGTGGCAACCTCCATCACCTGTATCTTCAGAAGGGATTGCCTACTGTCAACACCAGAGCATCTTATCTGCATCTATGGATAAGACAATGATGATCTGGAAACCAGAAAAAACTTCTGGCATCTGGATTAATGTTGTTACTGTTGGGGAATTAAGTCATTGTGCTCTAGGATTTTATGGTGGCCACTGGAGTCCCAATGGAGATTCAATCTTAGCACATGGGTATGGTGGATCTTTCCATCTGTGGAGAAATGTCGGTACTAGCTTAGATAATTGGCAACCACAAAAAGTTCCATCTGGGCATTTTGCAGCTATTACTGATATTGCTTGGGGGAGATCTGGTGAATACTTGCTGTCAGTCAGTGATGACCAGACGACACGAATTTTTTCTCCGTGGCAAAATGAAACATCTGTAGGAGATGAGGGTTCTTGGCATGAAATTGCTCGTCCTCAAGTTCATGGTCATGATATGAACTGTGTCACCATCATCCAAGGAAAAGGAAACCATCGTTTTGTCAGTGGAGCCGATGAGAAAGTGGCCAGAGTGTTTGAAGCTCCTTTGTCTTTCTTGAAGACATTGGGTCATGCCATTTCACAAAACTCTACCTTTTCCGAAGATATACAATTGGGTGTACAGATTTTGGGTGCAAATATGTCAGCTCTTGGGCTATCACAGAAACCTATTTATGTTCATGCTGAGCAGCACACCATAGAGAAGAATCCAAATGATAGCCTTGACACCCTTGAAGCCATTCCTGATGCGGTTCCTGTTGTGTTGACTGAACCTCCGATCGAAGATCAATTGGGATGGCATACACTATGGCCAGAATCACACAAGCTTTATGGTCATGGGAATGAGCTGTTTGCTCTTTGCAGTGATCATGAAGGGAAGCTTGTTGCTTCATCATGTAAGGCCCAATCAGCAGCAGTTGCAGAAATATGGCTGTGGCAAGTTGGTTCCTGGAAAGCAGTTGGTCGCTTGCAGTCTCATAGTTTGACTGTTACACAAATGGAATTCTCTCTTGATGACAAATTCCTGTTGGCTGTATCTAGGGATCGCCAGTACTCTGTATTTTCAATTGACAAAACAGGCACTGATGAAACTAGTTACAAGCTGGTAGCAAAGCACGAGGCACACAAAAGAATCATATGGTCATGTTCCTGGAATCCCCACGGCTATGAATTTGCAACAGGCTCGAGGGACAAGACAGTGAAGATCTGGACTTTGGGAAAAGATTCATCAGTTAAGCTGCTCGCGACTCTCCCACAGTTCAGCAGTAGCATCACAGCACTATCGTGGGCTAGTGTTGATTCCAAGAAAAATAATGGATTGCTTGCAGTTGGAATGGAAAACGGACTCATTGAATTGTGGAGTCTCTCTGTTAACAGAACCGACGATGGTCTAGCAGCAGGTGTACTTGCAGCTCTCGTTGCACGGTTTGATCCATTGATGTGCCATGTTTCTTCTGTGAGCCGTTTGGCGTGGAGAAAGCGCAGGTATGAAGATGGCAGTAGCATACAGCTTGCTTCTTGTGGAGCGGATCATTGTGTGAGAGTGTTCGAGGTAATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

840

Amino Acids

91.57

Weight (kDa)

6.1

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 22 - 153 2.9e-06 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 23 - 153 3.3e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 37 - 154 1.8e-06 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 37 - 153 9.1e-07 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 86 - 349 8.5e-10 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 194 - 301 2.6e-08 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 194 - 398 8.1e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 304 - 500 1.5e-07 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 378 - 497 7.9e-07 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 417 - 678 1.4e-10 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 591 - 767 9.3e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 594 - 724 2.7e-12 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 597 - 779 1.4e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5 PF25175 597 - 778 2.2e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 622 - 724 6.6e-06 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 626 - 774 1.8e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 627 - 775 2.7e-11 CDC20/Fizzy WD40 domain
WD40 PF00400 686 - 722 4.4e-08 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 694 - 776 1.9e-09 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2345
Acc36I ACCTGC 2 cut(s) 2345, 2430
AccB1I GGYRCC 2 cut(s) 119, 287
AccB7I CCANNNNNTGG 1 cut(s) 473
AccBSI CCGCTC 1 cut(s) 2483
AccII CGCG 2 cut(s) 113, 2201
AciI CCGC 3 cut(s) 15, 1706, 2483
AclWI GGATC 6 cut(s) 604, 689, 1183, 2007, 2381, 2493
AcoI YGGCCR 5 cut(s) 19, 585, 1126, 1482, 1766
AcsI RAATTY 5 cut(s) 162, 1326, 1958, 1976, 2126
AcuI CTGAAG 1 cut(s) 957
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 6 cut(s) 439, 867, 1204, 1578, 2009, 2361
AfiI CCNNNNNNNGG 3 cut(s) 28, 473, 589
AhdI GACNNNNNGTC 1 cut(s) 1524
AhlI ACTAGT 1 cut(s) 2048
AjnI CCWGG 4 cut(s) 559, 582, 1904, 2105
AleI CACNNNNGTG 1 cut(s) 2239
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
Alw21I GWGCWC 1 cut(s) 1111
Alw26I GTCTC 4 cut(s) 91, 477, 1935, 2324
AlwI GGATC 6 cut(s) 604, 689, 1183, 2007, 2381, 2493
AlwNI CAGNNNCTG 1 cut(s) 2039
Ama87I CYCGRG 1 cut(s) 2140
AoxI GGCC 7 cut(s) 19, 585, 859, 1126, 1482, 1766, 1857
ApeKI GCWGC 7 cut(s) 810, 1253, 1645, 1868, 2194, 2351, 2366
ApoI RAATTY 5 cut(s) 162, 1326, 1958, 1976, 2126
AseI ATTAAT 1 cut(s) 1074
Asp700I GAANNNNTTC 4 cut(s) 909, 1330, 1695, 2179
AspLEI GCGC 3 cut(s) 98, 122, 2439
AspS9I GGNCC 3 cut(s) 253, 860, 1858
AsuC2I CCSGG 2 cut(s) 180, 823
AsuHPI GGTGA 5 cut(s) 488, 734, 954, 1298, 1417
AvaI CYCGRG 1 cut(s) 2140
AvaII GGWCC 1 cut(s) 253
BalI TGGCCA 4 cut(s) 587, 1128, 1484, 1768
BanI GGYRCC 2 cut(s) 119, 287
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BauI CACGAG 1 cut(s) 2072
BbsI GAAGAC 1 cut(s) 1523
Bbv12I GWGCWC 1 cut(s) 1111
BbvI GCAGC 7 cut(s) 822, 1265, 1657, 1880, 2181, 2363, 2378
BceAI ACGGC 3 cut(s) 116, 2134, 2403
BcgI CGANNNNNNTGC 2 cut(s) 2121, 2155
BciT130I CCWGG 4 cut(s) 561, 584, 1906, 2107
BclI TGATCA 1 cut(s) 1822
BcnI CCSGG 2 cut(s) 180, 823
BcoDI GTCTC 4 cut(s) 91, 477, 1935, 2324
BcuI ACTAGT 1 cut(s) 2048
BfaI CTAG 7 cut(s) 548, 1112, 1206, 1995, 2049, 2247, 2348
BfmI CTRYAG 1 cut(s) 1356
BfoI RGCGCY 2 cut(s) 99, 123
BfuAI ACCTGC 2 cut(s) 2345, 2430
BglII AGATCT 2 cut(s) 1280, 2160
BisI GCNGC 7 cut(s) 811, 1254, 1646, 1869, 2195, 2352, 2367
BlpI GCTNAGC 2 cut(s) 841, 1641
BlsI GCNGC 7 cut(s) 812, 1255, 1647, 1870, 2196, 2353, 2368
BmcAI AGTACT 1 cut(s) 2009
Bme1390I CCNGG 6 cut(s) 180, 561, 584, 823, 1906, 2107
Bme18I GGWCC 1 cut(s) 253
BmeRI GACNNNNNGTC 1 cut(s) 1524
BmeT110I CYCGRG 1 cut(s) 2140
BmgT120I GGNCC 3 cut(s) 253, 860, 1858
BmiI GGNNCC 5 cut(s) 121, 289, 1468, 1710, 1903
BmrFI CCNGG 6 cut(s) 180, 561, 584, 823, 1906, 2107
BmsI GCATC 8 cut(s) 268, 387, 854, 1014, 1025, 1074, 1693, 2235
BoxI GACNNNNGTC 1 cut(s) 2343
BpiI GAAGAC 1 cut(s) 1523
BpmI CTGGAG 2 cut(s) 294, 1153
Bpu1102I GCTNAGC 2 cut(s) 841, 1641
BpuEI CTTGAG 1 cut(s) 1380
BpuMI CCSGG 2 cut(s) 180, 823
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 560, 588, 1337, 1435, 2116
BsaXI ACNNNNNCTCC 4 cut(s) 1270, 1300, 1714, 1744
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 473, 589
Bse1I ACTGG 4 cut(s) 478, 906, 1136, 2005
Bse3DI GCAATG 1 cut(s) 701
BseBI CCWGG 4 cut(s) 561, 584, 1906, 2107
BseDI CCNNGG 5 cut(s) 560, 588, 1337, 1435, 2116
BseGI GGATG 3 cut(s) 439, 1431, 1757
BseLI CCNNNNNNNGG 3 cut(s) 28, 473, 589
BseMI GCAATG 1 cut(s) 701
BseMII CTCAG 2 cut(s) 396, 1632
BseNI ACTGG 4 cut(s) 478, 906, 1136, 2005
BseRI GAGGAG 1 cut(s) 646
BseXI GCAGC 7 cut(s) 822, 1265, 1657, 1880, 2181, 2363, 2378
BseYI CCCAGC 2 cut(s) 281, 569
Bsh1236I CGCG 2 cut(s) 113, 2201
Bsh1285I CGRYCG 1 cut(s) 1737
BshFI GGCC 7 cut(s) 21, 587, 861, 1128, 1484, 1768, 1859
BshNI GGYRCC 2 cut(s) 119, 287
BsiEI CGRYCG 1 cut(s) 1737
BsiHKAI GWGCWC 1 cut(s) 1111
BsiHKCI CYCGRG 1 cut(s) 2140
BsiSI CCGG 3 cut(s) 22, 179, 822
BslFI GGGAC 2 cut(s) 1122, 2159
BslI CCNNNNNNNGG 3 cut(s) 28, 473, 589
BsmAI GTCTC 4 cut(s) 91, 477, 1935, 2324
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 1122, 2159
BsmI GAATGC 2 cut(s) 233, 571
BsnI GGCC 7 cut(s) 21, 587, 861, 1128, 1484, 1768, 1859
BsoBI CYCGRG 1 cut(s) 2140
Bsp1286I GDGCHC 1 cut(s) 1111
Bsp1407I TGTACA 1 cut(s) 1576
Bsp1720I GCTNAGC 2 cut(s) 841, 1641
Bsp19I CCATGG 1 cut(s) 588
Bsp68I TCGCGA 1 cut(s) 2201
BspACI CCGC 3 cut(s) 15, 1706, 2483
BspANI GGCC 7 cut(s) 21, 587, 861, 1128, 1484, 1768, 1859
BspCNI CTCAG 2 cut(s) 397, 1633
BspFNI CGCG 2 cut(s) 113, 2201
BspHI TCATGA 3 cut(s) 922, 1408, 1825
BspLI GGNNCC 5 cut(s) 121, 289, 1468, 1710, 1903
BspMI ACCTGC 2 cut(s) 2345, 2430
BspPI GGATC 6 cut(s) 604, 689, 1183, 2007, 2381, 2493
BspT107I GGYRCC 2 cut(s) 119, 287
BsrBI CCGCTC 1 cut(s) 2483
BsrDI GCAATG 1 cut(s) 701
BsrGI TGTACA 1 cut(s) 1576
BsrI ACTGG 4 cut(s) 478, 906, 1136, 2005
BssECI CCNNGG 5 cut(s) 560, 588, 1337, 1435, 2116
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 2072
BssT1I CCWWGG 2 cut(s) 588, 1435
Bst2BI CACGAG 1 cut(s) 2072
Bst2UI CCWGG 4 cut(s) 561, 584, 1906, 2107
Bst6I CTCTTC 1 cut(s) 915
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 2 cut(s) 416, 1874
BstAUI TGTACA 1 cut(s) 1576
BstC8I GCNNGC 5 cut(s) 655, 1925, 2199, 2280, 2469
BstDEI CTNAG 5 cut(s) 405, 841, 1156, 1210, 1641
BstDSI CCRYGG 3 cut(s) 588, 1337, 2116
BstF5I GGATG 3 cut(s) 439, 1431, 1757
BstFNI CGCG 2 cut(s) 113, 2201
BstH2I RGCGCY 2 cut(s) 99, 123
BstHHI GCGC 3 cut(s) 98, 122, 2439
BstMAI GTCTC 4 cut(s) 91, 477, 1935, 2324
BstMCI CGRYCG 1 cut(s) 1737
BstMWI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1865, 1874, 2375
BstNI CCWGG 4 cut(s) 561, 584, 1906, 2107
BstNSI RCATGY 1 cut(s) 378
BstPAI GACNNNNGTC 1 cut(s) 2343
BstSCI CCNGG 6 cut(s) 178, 559, 582, 821, 1904, 2105
BstSFI CTRYAG 1 cut(s) 1356
BstUI CGCG 2 cut(s) 113, 2201
BstV1I GCAGC 7 cut(s) 822, 1265, 1657, 1880, 2181, 2363, 2378
BstV2I GAAGAC 1 cut(s) 1523
BstX2I RGATCY 4 cut(s) 609, 1175, 1280, 2160
BstYI RGATCY 4 cut(s) 609, 1175, 1280, 2160
BsuRI GGCC 7 cut(s) 21, 587, 861, 1128, 1484, 1768, 1859
BtgI CCRYGG 3 cut(s) 588, 1337, 2116
BtsCI GGATG 3 cut(s) 439, 1431, 1757
BtsI GCAGTG 1 cut(s) 1825
BtuMI TCGCGA 1 cut(s) 2201
BveI ACCTGC 2 cut(s) 2345, 2430
Cac8I GCNNGC 5 cut(s) 655, 1925, 2199, 2280, 2469
CaiI CAGNNNCTG 1 cut(s) 2039
CciI TCATGA 3 cut(s) 922, 1408, 1825
CfoI GCGC 3 cut(s) 98, 122, 2439
Cfr13I GGNCC 3 cut(s) 253, 860, 1858
Csp6I GTAC 6 cut(s) 438, 866, 1203, 1577, 2008, 2360
CviQI GTAC 6 cut(s) 438, 866, 1203, 1577, 2008, 2360
DdeI CTNAG 5 cut(s) 405, 841, 1156, 1210, 1641
DinI GGCGCC 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 1524
EaeI YGGCCR 5 cut(s) 19, 585, 1126, 1482, 1766
Eam1104I CTCTTC 1 cut(s) 915
Eam1105I GACNNNNNGTC 1 cut(s) 1524
EarI CTCTTC 1 cut(s) 915
Eco130I CCWWGG 2 cut(s) 588, 1435
Eco47I GGWCC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 2140
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 1958
EcoRII CCWGG 4 cut(s) 559, 582, 1904, 2105
EcoT14I CCWWGG 2 cut(s) 588, 1435
EcoT22I ATGCAT 1 cut(s) 380
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 2 cut(s) 588, 1435
Esp3I CGTCTC 1 cut(s) 91
FalI AAGNNNNNCTT 2 cut(s) 1821, 1853
FaqI GGGAC 2 cut(s) 1122, 2159
FauNDI CATATG 2 cut(s) 776, 2093
FbaI TGATCA 1 cut(s) 1822
Fnu4HI GCNGC 7 cut(s) 811, 1254, 1646, 1869, 2195, 2352, 2367
FokI GGATG 3 cut(s) 446, 1418, 1764
Fsp4HI GCNGC 7 cut(s) 811, 1254, 1646, 1869, 2195, 2352, 2367
FspBI CTAG 7 cut(s) 548, 1112, 1206, 1995, 2049, 2247, 2348
GlaI GCGC 3 cut(s) 97, 121, 2438
GluI GCNGC 7 cut(s) 811, 1254, 1646, 1869, 2195, 2352, 2367
GsaI CCCAGC 2 cut(s) 285, 573
GsuI CTGGAG 2 cut(s) 294, 1153
HaeII RGCGCY 2 cut(s) 99, 123
HaeIII GGCC 7 cut(s) 21, 587, 861, 1128, 1484, 1768, 1859
HapII CCGG 3 cut(s) 22, 179, 822
HhaI GCGC 3 cut(s) 98, 122, 2439
Hin1I GRCGYC 1 cut(s) 120
Hin6I GCGC 3 cut(s) 96, 120, 2437
HinP1I GCGC 3 cut(s) 96, 120, 2437
HincII GTYRAC 3 cut(s) 995, 1722, 2329
HindII GTYRAC 3 cut(s) 995, 1722, 2329
HindIII AAGCTT 3 cut(s) 838, 1781, 1835
HpaI GTTAAC 1 cut(s) 2329
HpaII CCGG 3 cut(s) 22, 179, 822
HphI GGTGA 5 cut(s) 488, 734, 954, 1298, 1417
Hpy166II GTNNAC 7 cut(s) 6, 79, 995, 1577, 1722, 2329, 2360
Hpy188I TCNGA 7 cut(s) 400, 433, 686, 894, 976, 1558, 1734
Hpy8I GTNNAC 7 cut(s) 6, 79, 995, 1577, 1722, 2329, 2360
Hpy99I CGWCG 3 cut(s) 14, 137, 2342
HpyAV CCTTC 6 cut(s) 314, 358, 473, 851, 971, 1823
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1865, 1874, 2375
HpyF3I CTNAG 5 cut(s) 405, 841, 1156, 1210, 1641
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 120
HspAI GCGC 3 cut(s) 96, 120, 2437
KasI GGCGCC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 1822
KspAI GTTAAC 1 cut(s) 2329
LmnI GCTCC 4 cut(s) 56, 1466, 1504, 2480
Lsp1109I GCAGC 7 cut(s) 822, 1265, 1657, 1880, 2181, 2363, 2378
LweI GCATC 8 cut(s) 268, 387, 854, 1014, 1025, 1074, 1693, 2235
MaeI CTAG 7 cut(s) 548, 1112, 1206, 1995, 2049, 2247, 2348
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 6 cut(s) 182, 370, 1081, 1423, 1945, 2051
MbiI CCGCTC 1 cut(s) 2483
MfeI CAATTG 3 cut(s) 1568, 1745, 2022
MflI RGATCY 4 cut(s) 609, 1175, 1280, 2160
MhlI GDGCHC 1 cut(s) 1111
MlsI TGGCCA 4 cut(s) 587, 1128, 1484, 1768
MluNI TGGCCA 4 cut(s) 587, 1128, 1484, 1768
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 4 cut(s) 1144, 2197, 2295, 2326
MmeI TCCRAC 1 cut(s) 2266
Mox20I TGGCCA 4 cut(s) 587, 1128, 1484, 1768
Mph1103I ATGCAT 1 cut(s) 380
MroXI GAANNNNTTC 4 cut(s) 909, 1330, 1695, 2179
MscI TGGCCA 4 cut(s) 587, 1128, 1484, 1768
MseI TTAA 6 cut(s) 198, 1074, 1097, 2190, 2328, 2518
MslI CAYNNNNRTG 6 cut(s) 1167, 1407, 1797, 2121, 2239, 2395
Msp20I TGGCCA 4 cut(s) 587, 1128, 1484, 1768
MspI CCGG 3 cut(s) 22, 179, 822
MspR9I CCNGG 6 cut(s) 180, 561, 584, 823, 1906, 2107
MunI CAATTG 3 cut(s) 1568, 1745, 2022
Mva1269I GAATGC 2 cut(s) 233, 571
MvaI CCWGG 4 cut(s) 561, 584, 1906, 2107
MvnI CGCG 2 cut(s) 113, 2201
MwoI GCNNNNNNNGC 8 cut(s) 119, 128, 239, 287, 416, 1865, 1874, 2375
NarI GGCGCC 1 cut(s) 120
NciI CCSGG 2 cut(s) 180, 823
NcoI CCATGG 1 cut(s) 588
NdeI CATATG 2 cut(s) 776, 2093
NlaIV GGNNCC 5 cut(s) 121, 289, 1468, 1710, 1903
NmuCI GTSAC 3 cut(s) 182, 370, 1423
NruI TCGCGA 1 cut(s) 2201
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 2239
PaeR7I CTCGAG 1 cut(s) 2140
PagI TCATGA 3 cut(s) 922, 1408, 1825
PaqCI CACCTGC 1 cut(s) 2345
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 2 cut(s) 233, 571
PdmI GAANNNNTTC 4 cut(s) 909, 1330, 1695, 2179
PfeI GAWTC 9 cut(s) 506, 905, 1148, 1663, 1772, 2088, 2110, 2180, 2255
PflMI CCANNNNNTGG 1 cut(s) 473
PfoI TCCNGGA 2 cut(s) 1904, 2105
PkrI GCNGC 7 cut(s) 812, 1255, 1647, 1870, 2196, 2353, 2368
Ple19I CGATCG 1 cut(s) 1737
PleI GAGTC 4 cut(s) 1143, 2197, 2295, 2325
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 4 cut(s) 1143, 2197, 2295, 2325
PshAI GACNNNNGTC 1 cut(s) 2343
PshBI ATTAAT 1 cut(s) 1074
Psp6I CCWGG 4 cut(s) 559, 582, 1904, 2105
PspFI CCCAGC 2 cut(s) 281, 569
PspGI CCWGG 4 cut(s) 559, 582, 1904, 2105
PspN4I GGNNCC 5 cut(s) 121, 289, 1468, 1710, 1903
PspPI GGNCC 3 cut(s) 253, 860, 1858
PspXI VCTCGAGB 1 cut(s) 2140
PstNI CAGNNNCTG 1 cut(s) 2039
PsuI RGATCY 4 cut(s) 609, 1175, 1280, 2160
PvuI CGATCG 1 cut(s) 1737
RruI TCGCGA 1 cut(s) 2201
RsaI GTAC 6 cut(s) 439, 867, 1204, 1578, 2009, 2361
RsaNI GTAC 6 cut(s) 438, 866, 1203, 1577, 2008, 2360
RseI CAYNNNNRTG 6 cut(s) 1167, 1407, 1797, 2121, 2239, 2395
SaqAI TTAA 6 cut(s) 198, 1074, 1097, 2190, 2328, 2518
SatI GCNGC 7 cut(s) 811, 1254, 1646, 1869, 2195, 2352, 2367
Sau96I GGNCC 3 cut(s) 253, 860, 1858
ScaI AGTACT 1 cut(s) 2009
SchI GAGTC 4 cut(s) 1144, 2197, 2295, 2326
ScrFI CCNGG 6 cut(s) 180, 561, 584, 823, 1906, 2107
SduI GDGCHC 1 cut(s) 1111
SfaNI GCATC 8 cut(s) 268, 387, 854, 1014, 1025, 1074, 1693, 2235
SfcI CTRYAG 1 cut(s) 1356
SfoI GGCGCC 1 cut(s) 121
Sfr274I CTCGAG 1 cut(s) 2140
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 2140
SmiMI CAYNNNNRTG 6 cut(s) 1167, 1407, 1797, 2121, 2239, 2395
SmlI CTYRAG 2 cut(s) 1395, 2140
SmoI CTYRAG 2 cut(s) 1395, 2140
SpeI ACTAGT 1 cut(s) 2048
SsiI CCGC 3 cut(s) 15, 1706, 2483
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 7 cut(s) 548, 1112, 1206, 1995, 2049, 2247, 2348
StyD4I CCNGG 6 cut(s) 178, 559, 582, 821, 1904, 2105
StyI CCWWGG 2 cut(s) 588, 1435
TaiI ACGT 1 cut(s) 87
TaqI TCGA 6 cut(s) 144, 167, 649, 1737, 2141, 2505
TaqII GACCGA 1 cut(s) 270
TatI WGTACW 4 cut(s) 865, 1576, 2007, 2359
TfiI GAWTC 9 cut(s) 506, 905, 1148, 1663, 1772, 2088, 2110, 2180, 2255
Tru1I TTAA 6 cut(s) 198, 1074, 1097, 2190, 2328, 2518
Tru9I TTAA 6 cut(s) 198, 1074, 1097, 2190, 2328, 2518
TseFI GTSAC 3 cut(s) 182, 370, 1423
TseI GCWGC 7 cut(s) 810, 1253, 1645, 1868, 2194, 2351, 2366
Tsp45I GTSAC 3 cut(s) 182, 370, 1423
TspGWI ACGGA 2 cut(s) 1326, 2313
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 1 cut(s) 1074
XapI RAATTY 5 cut(s) 162, 1326, 1958, 1976, 2126
XceI RCATGY 1 cut(s) 378
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 620
XhoI CTCGAG 1 cut(s) 2140
XmnI GAANNNNTTC 4 cut(s) 909, 1330, 1695, 2179
XspI CTAG 7 cut(s) 548, 1112, 1206, 1995, 2049, 2247, 2348
ZrmI AGTACT 1 cut(s) 2009
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.