AT1G50380

prolyl oligopeptidase family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18662266 .. 18666515
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50380.1

Sequence Viewer

Length: 2133 bp
ATGGCGGAATCGAGATCCCCTCCTGTAGCGAAGAAGGTGGAGCATGTGATGGAGATGTTCGGTGACGTTAGGGTTGACAATTACTACTGGCTCCGTGACGATTCTCGCACCAATCCCGACATGCTTTCTTATCTTCGTGAAGAAAATCACTACACTGATTTCGTCATGTCTGGGACCAAGCAATTTGAGAATCAGCTGTTTGCTGAAATAAGAGGGAGGATCAAAGAAGATGATATATCTGCACCTCTACGCAAGGGTCCTTACTATTATTATGAGAAAAATCTTCAAGGAAAGGAATATATTCAGCACTGTAGACGTTTGATCACTGACAACAAAGCTGAGCCTTCTGTCTATGATACTATGCCAACTGGTCCAGATGCTCCTCCTGAGCATGTGATATTGGATGAGAATACCAAGGCTCAAGAGCATGACTACTACAGAATTGGGGCCTTCAAGGCGAGTCCCGATCATAAATTGGTGGCATATGCAGAGGACACAAAAGGTGATGAGATATATACAGTGAATGTCATCGACTCTGAAGCCCTAAAACCAGTGGGGCAACAGCTTAAAGGACTTACTTCTTATCTTGAATGGGCTGGTAATGATGCTTTGCTCTACATAACAATGGACGAAATCCTGCGACCTGATAAGGTTTGGTTACATAAATTAGGGACAGAGCAGAGCAGTGATGTATGCCTTTACCATGAGAAGGATGATATGTTTTCTCTTGAACTCCACGCTTCTGAGAGCCATAAGTATTTATTTGTTGCATCTGAAAGCAAAACTACAAGATTTGTCTTCTCGCTTGATGTGTCCAAGACTCAGGATGGACTCAGGGTGTTGACACCTCGTGTAGATGGAATTGATTCATCTGTCAGTCATCGTGGGAACCACTTTTTCATCCAGAGAAGGAGCACTGAATTTTACAACTCAGAACTGATCGCCTGTCCAGTTGATGACACATCAAAGACAACTGTTCTGCTTCCACATAGAGAAAGTGTAAAGATTCAGGAAATTCAGCTTTTCCGAGATCATCTTGCAGTCTTCGAGCGTGAAAACGGACTGCAGAAGATCACAGTTCATAGGCTTCCTGCTGAGGGACAGCCACTGGAAGGTCTCCAAGGTGGTCGTAATGTGAGCTTTGTTGACCCGGTCTATTCAGTTGACTCAACCGAGTCCGAATTTTCGTCCAGGGTTTTAAGGTTTAAATACTGCTCAATGAAAACACCTCCTTCTGTGTATGACTATGACATGGACAGTGGCACTTCCGTTGTCAAGAAGATTGACACAGTATTGGGAGGTTTTGATGCATCAAATTATGTTACAGAAAGAAAGTGGGTCGCTGCATCAGACGGAACTCAAATTCCAATGTCTATTGTGTATAACAAAAAACTTGCAAAGCTTGATGGATCTGATCCATTACTCCTTTATGGATATGGTTCATATGAGATTTCTGTGGATCCTTATTTCAAGGCATCAAGGTTGTCCCTGTTAGATCGTGGGTTTACCTTTGTAATTGCTCATGTTCGTGGGGGCGGTGAGATGGGGAGACAGTGGTATGAGAATGGGAAGCTGTTGAAGAAGAAAAACACATTCACTGATTTTATTGCTTGTGCTGAGCGTTTAATAGAACTAAAATATTGCTCGAAAGAAAAACTGTGCATGGAAGGGAGAAGTGCTGGTGGATTGCTGATGGGTGCTGTTGTTAATATGAGGCCTGACTTGTTCAAGGTGGTTATCGCTGGAGTTCCTTTTGTAGATGTCTTGACAACAATGCTGGACCCAACAATTCCGCTTACGACATCAGAGTGGGAGGAGTGGGGTGACCCCAGAAAGGAAGAATTTTACTTCTATATGAAGTCATATTCCCCTGTAGACAATGTAACGGCGCAGAATTATCCAAATATGCTTGTAACTGCTGGGTTAAATGATCCAAGAGTTATGTACTCTGAACCTGGCAAGTGGGTGGCAAAACTGAGAGAAATGAAGACCGACAACAACGTACTTCTGTTCAAATGCGAGCTTGGCGCAGGGCATTTCTCAAAATCTGGGAGATTCGAGAAGCTTCAAGAAGATGCATTTACGTTTGCATTCATGATGAAAGTTTTGGACATGATTCCTGCTTCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

710

Amino Acids

80.94

Weight (kDa)

5.54

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9_N PF02897 7 - 427 1.1e-119 Prolyl oligopeptidase, N-terminal beta-propeller domain
Peptidase_S9 PF00326 489 - 704 5.4e-63 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011215)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 313, 1875
AciI CCGC 3 cut(s) 5, 1536, 1793
AclWI GGATC 7 cut(s) 9, 227, 1409, 1417, 1454, 1467, 1925
AcsI RAATTY 5 cut(s) 920, 1014, 1181, 1362, 1841
AcuI CTGAAG 1 cut(s) 558
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 2 cut(s) 1946, 2004
AfiI CCNNNNNNNGG 5 cut(s) 709, 1097, 1112, 1834, 2126
AgsI TTSAA 9 cut(s) 287, 454, 590, 731, 1471, 1579, 1729, 2014, 2069
AjnI CCWGG 2 cut(s) 1190, 1954
AloI GAACNNNNNNTCC 2 cut(s) 1348, 1380
AluBI AGCT 9 cut(s) 196, 338, 565, 1021, 1140, 1402, 1573, 2023, 2065
AluI AGCT 9 cut(s) 196, 338, 565, 1021, 1140, 1402, 1573, 2023, 2065
Alw21I GWGCWC 1 cut(s) 917
Alw26I GTCTC 2 cut(s) 1121, 1543
AlwI GGATC 7 cut(s) 9, 227, 1409, 1417, 1454, 1467, 1925
AlwNI CAGNNNCTG 1 cut(s) 1108
AoxI GGCC 2 cut(s) 447, 1715
ApeKI GCWGC 1 cut(s) 1343
ApoI RAATTY 5 cut(s) 920, 1014, 1181, 1362, 1841
Asp700I GAANNNNTTC 2 cut(s) 300, 865
AspLEI GCGC 2 cut(s) 1891, 2030
AspS9I GGNCC 5 cut(s) 174, 257, 371, 447, 1780
AsuC2I CCSGG 1 cut(s) 1151
AsuHPI GGTGA 4 cut(s) 74, 515, 1550, 1835
AvaII GGWCC 4 cut(s) 174, 257, 371, 1780
BamHI GGATCC 1 cut(s) 1459
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 3 cut(s) 790, 1036, 1994
Bbv12I GWGCWC 1 cut(s) 917
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 1 cut(s) 1330
BccI CCATC 6 cut(s) 43, 821, 851, 1400, 1537, 1687
BceAI ACGGC 1 cut(s) 1902
BciT130I CCWGG 2 cut(s) 1192, 1956
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 1151
BcoDI GTCTC 2 cut(s) 1121, 1543
BfmI CTRYAG 5 cut(s) 24, 310, 436, 1064, 1872
BglI GCCNNNNNGGC 1 cut(s) 455
BisI GCNGC 1 cut(s) 1344
BlpI GCTNAGC 2 cut(s) 339, 1617
BlsI GCNGC 1 cut(s) 1345
Bme1390I CCNGG 3 cut(s) 1151, 1192, 1956
Bme18I GGWCC 4 cut(s) 174, 257, 371, 1780
BmgT120I GGNCC 5 cut(s) 174, 257, 371, 447, 1780
BmiI GGNNCC 7 cut(s) 92, 175, 258, 448, 890, 1461, 1782
BmrFI CCNGG 3 cut(s) 1151, 1192, 1956
BmsI GCATC 8 cut(s) 367, 595, 779, 1297, 1319, 1355, 1484, 2065
BpiI GAAGAC 3 cut(s) 790, 1036, 1994
BplI GAGNNNNNCTC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 1764
Bpu10I CCTNAGC 2 cut(s) 387, 1095
Bpu1102I GCTNAGC 2 cut(s) 339, 1617
BpuEI CTTGAG 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 1151
BsaI GGTCTC 1 cut(s) 1121
BsaJI CCNNGG 3 cut(s) 414, 1120, 1191
Bsc4I CCNNNNNNNGG 5 cut(s) 709, 1097, 1112, 1834, 2126
Bse1I ACTGG 5 cut(s) 92, 373, 551, 950, 1113
BseBI CCWGG 2 cut(s) 1192, 1956
BseDI CCNNGG 3 cut(s) 414, 1120, 1191
BseGI GGATG 4 cut(s) 409, 718, 832, 900
BseLI CCNNNNNNNGG 5 cut(s) 709, 1097, 1112, 1834, 2126
BseMII CTCAG 9 cut(s) 330, 378, 735, 836, 847, 945, 1086, 1608, 1967
BseNI ACTGG 5 cut(s) 92, 373, 551, 950, 1113
BseRI GAGGAG 2 cut(s) 372, 1829
BseXI GCAGC 1 cut(s) 1330
BseYI CCCAGC 1 cut(s) 1919
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 2 cut(s) 449, 1717
BsiHKAI GWGCWC 1 cut(s) 917
BsiSI CCGG 1 cut(s) 1151
BslFI GGGAC 5 cut(s) 187, 447, 685, 1113, 1471
BslI CCNNNNNNNGG 5 cut(s) 709, 1097, 1112, 1834, 2126
BsmAI GTCTC 2 cut(s) 1121, 1543
BsmFI GGGAC 5 cut(s) 187, 447, 685, 1113, 1471
BsmI GAATGC 1 cut(s) 2090
BsnI GGCC 2 cut(s) 449, 1717
Bso31I GGTCTC 1 cut(s) 1121
Bsp1286I GDGCHC 1 cut(s) 917
Bsp1720I GCTNAGC 2 cut(s) 339, 1617
BspACI CCGC 3 cut(s) 5, 1536, 1793
BspANI GGCC 2 cut(s) 449, 1717
BspCNI CTCAG 9 cut(s) 331, 379, 736, 835, 846, 944, 1087, 1609, 1968
BspHI TCATGA 1 cut(s) 2094
BspLI GGNNCC 7 cut(s) 92, 175, 258, 448, 890, 1461, 1782
BspMAI CTGCAG 1 cut(s) 1068
BspPI GGATC 7 cut(s) 9, 227, 1409, 1417, 1454, 1467, 1925
BspTNI GGTCTC 1 cut(s) 1121
BsrI ACTGG 5 cut(s) 92, 373, 551, 950, 1113
BssECI CCNNGG 3 cut(s) 414, 1120, 1191
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 2 cut(s) 414, 1120
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 2 cut(s) 1192, 1956
Bst4CI ACNGT 8 cut(s) 311, 520, 976, 1078, 1259, 1291, 1554, 1659
BstC8I GCNNGC 1 cut(s) 2021
BstDEI CTNAG 9 cut(s) 339, 387, 744, 822, 833, 931, 1095, 1617, 1976
BstEII GGTNACC 1 cut(s) 1823
BstF5I GGATG 4 cut(s) 409, 718, 832, 900
BstHHI GCGC 2 cut(s) 1891, 2030
BstMAI GTCTC 2 cut(s) 1121, 1543
BstMWI GCNNNNNNNGC 2 cut(s) 455, 2025
BstNI CCWGG 2 cut(s) 1192, 1956
BstNSI RCATGY 3 cut(s) 47, 124, 395
BstPI GGTNACC 1 cut(s) 1823
BstSCI CCNGG 3 cut(s) 1149, 1190, 1954
BstSFI CTRYAG 5 cut(s) 24, 310, 436, 1064, 1872
BstV1I GCAGC 1 cut(s) 1330
BstV2I GAAGAC 3 cut(s) 790, 1036, 1994
BstX2I RGATCY 3 cut(s) 14, 1409, 1459
BstYI RGATCY 3 cut(s) 14, 1409, 1459
BsuRI GGCC 2 cut(s) 449, 1717
BtsCI GGATG 4 cut(s) 409, 718, 832, 900
BtsI GCAGTG 1 cut(s) 691
Cac8I GCNNGC 1 cut(s) 2021
CaiI CAGNNNCTG 1 cut(s) 1108
CciI TCATGA 1 cut(s) 2094
CfoI GCGC 2 cut(s) 1891, 2030
Cfr13I GGNCC 5 cut(s) 174, 257, 371, 447, 1780
Csp6I GTAC 2 cut(s) 1945, 2003
CviQI GTAC 2 cut(s) 1945, 2003
DdeI CTNAG 9 cut(s) 339, 387, 744, 822, 833, 931, 1095, 1617, 1976
DraI TTTAAA 1 cut(s) 1207
DraIII CACNNNGTG 1 cut(s) 851
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 414, 1120
Eco147I AGGCCT 1 cut(s) 1717
Eco31I GGTCTC 1 cut(s) 1121
Eco47I GGWCC 4 cut(s) 174, 257, 371, 1780
Eco57I CTGAAG 1 cut(s) 558
Eco91I GGTNACC 1 cut(s) 1823
EcoO109I RGGNCCY 2 cut(s) 257, 447
EcoO65I GGTNACC 1 cut(s) 1823
EcoRII CCWGG 2 cut(s) 1190, 1954
EcoT14I CCWWGG 2 cut(s) 414, 1120
EcoT22I ATGCAT 2 cut(s) 1312, 2080
ErhI CCWWGG 2 cut(s) 414, 1120
FaqI GGGAC 5 cut(s) 187, 447, 685, 1113, 1471
FauNDI CATATG 2 cut(s) 484, 1444
FbaI TGATCA 1 cut(s) 321
FblI GTMKAC 2 cut(s) 313, 1875
Fnu4HI GCNGC 1 cut(s) 1344
FokI GGATG 4 cut(s) 416, 725, 839, 887
Fsp4HI GCNGC 1 cut(s) 1344
GlaI GCGC 2 cut(s) 1890, 2029
GluI GCNGC 1 cut(s) 1344
GsaI CCCAGC 1 cut(s) 1923
GsuI CTGGAG 1 cut(s) 1764
HaeIII GGCC 2 cut(s) 449, 1717
HapII CCGG 1 cut(s) 1151
HhaI GCGC 2 cut(s) 1891, 2030
Hin6I GCGC 2 cut(s) 1889, 2028
HinP1I GCGC 2 cut(s) 1889, 2028
HincII GTYRAC 4 cut(s) 76, 843, 1147, 1165
HindII GTYRAC 4 cut(s) 76, 843, 1147, 1165
HindIII AAGCTT 2 cut(s) 1400, 2063
HpaII CCGG 1 cut(s) 1151
HphI GGTGA 4 cut(s) 74, 515, 1550, 1835
Hpy166II GTNNAC 7 cut(s) 76, 314, 843, 1147, 1165, 1506, 1876
Hpy8I GTNNAC 7 cut(s) 76, 314, 843, 1147, 1165, 1506, 1876
HpyAV CCTTC 8 cut(s) 28, 354, 460, 703, 903, 1106, 1242, 1661
HpyCH4III ACNGT 8 cut(s) 311, 520, 976, 1078, 1259, 1291, 1554, 1659
HpyCH4IV ACGT 4 cut(s) 66, 316, 2001, 2084
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 2025
HpyF3I CTNAG 9 cut(s) 339, 387, 744, 822, 833, 931, 1095, 1617, 1976
HpySE526I ACGT 4 cut(s) 66, 316, 2001, 2084
HspAI GCGC 2 cut(s) 1889, 2028
Ksp22I TGATCA 1 cut(s) 321
LmnI GCTCC 4 cut(s) 40, 96, 385, 912
Lsp1109I GCAGC 1 cut(s) 1330
LweI GCATC 8 cut(s) 367, 595, 779, 1297, 1319, 1355, 1484, 2065
MaeII ACGT 4 cut(s) 66, 316, 2001, 2084
MaeIII GTNAC 7 cut(s) 62, 95, 657, 1321, 1823, 1882, 1912
MflI RGATCY 3 cut(s) 14, 1409, 1459
MhlI GDGCHC 1 cut(s) 917
MlyI GAGTC 6 cut(s) 469, 527, 814, 825, 1160, 1184
Mph1103I ATGCAT 2 cut(s) 1312, 2080
MroXI GAANNNNTTC 2 cut(s) 300, 865
MseI TTAA 6 cut(s) 567, 1199, 1206, 1625, 1707, 1925
MslI CAYNNNNRTG 3 cut(s) 623, 1527, 1807
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 1 cut(s) 1151
MspR9I CCNGG 3 cut(s) 1151, 1192, 1956
Mva1269I GAATGC 1 cut(s) 2090
MvaI CCWGG 2 cut(s) 1192, 1956
MwoI GCNNNNNNNGC 2 cut(s) 455, 2025
NciI CCSGG 1 cut(s) 1151
NdeI CATATG 2 cut(s) 484, 1444
NlaIV GGNNCC 7 cut(s) 92, 175, 258, 448, 890, 1461, 1782
NmuCI GTSAC 3 cut(s) 62, 95, 1823
NsiI ATGCAT 2 cut(s) 1312, 2080
NspI RCATGY 3 cut(s) 47, 124, 395
PagI TCATGA 1 cut(s) 2094
PceI AGGCCT 1 cut(s) 1717
PctI GAATGC 1 cut(s) 2090
PdmI GAANNNNTTC 2 cut(s) 300, 865
PfeI GAWTC 7 cut(s) 8, 101, 190, 866, 1006, 2055, 2116
PflFI GACNNNGTC 1 cut(s) 1151
PkrI GCNGC 1 cut(s) 1345
PleI GAGTC 6 cut(s) 468, 527, 814, 825, 1160, 1183
PpsI GAGTC 6 cut(s) 468, 527, 814, 825, 1160, 1183
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 1190, 1954
PspEI GGTNACC 1 cut(s) 1823
PspFI CCCAGC 1 cut(s) 1919
PspGI CCWGG 2 cut(s) 1190, 1954
PspN4I GGNNCC 7 cut(s) 92, 175, 258, 448, 890, 1461, 1782
PspPI GGNCC 5 cut(s) 174, 257, 371, 447, 1780
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 3 cut(s) 14, 1409, 1459
PsyI GACNNNGTC 1 cut(s) 1151
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 2 cut(s) 1946, 2004
RsaNI GTAC 2 cut(s) 1945, 2003
RseI CAYNNNNRTG 3 cut(s) 623, 1527, 1807
SaqAI TTAA 6 cut(s) 567, 1199, 1206, 1625, 1707, 1925
SatI GCNGC 1 cut(s) 1344
Sau96I GGNCC 5 cut(s) 174, 257, 371, 447, 1780
SchI GAGTC 6 cut(s) 469, 527, 814, 825, 1160, 1184
ScrFI CCNGG 3 cut(s) 1151, 1192, 1956
SduI GDGCHC 1 cut(s) 917
SfaNI GCATC 8 cut(s) 367, 595, 779, 1297, 1319, 1355, 1484, 2065
SfcI CTRYAG 5 cut(s) 24, 310, 436, 1064, 1872
SinI GGWCC 4 cut(s) 174, 257, 371, 1780
SmiMI CAYNNNNRTG 3 cut(s) 623, 1527, 1807
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
SseBI AGGCCT 1 cut(s) 1717
SsiI CCGC 3 cut(s) 5, 1536, 1793
SspI AATATT 1 cut(s) 1640
StuI AGGCCT 1 cut(s) 1717
StyD4I CCNGG 3 cut(s) 1149, 1190, 1954
StyI CCWWGG 2 cut(s) 414, 1120
TaaI ACNGT 8 cut(s) 311, 520, 976, 1078, 1259, 1291, 1554, 1659
TaiI ACGT 4 cut(s) 69, 319, 2004, 2087
TaqI TCGA 5 cut(s) 11, 531, 1047, 1646, 2058
TaqII GACCGA 1 cut(s) 2006
TatI WGTACW 1 cut(s) 1944
TfiI GAWTC 7 cut(s) 8, 101, 190, 866, 1006, 2055, 2116
Tru1I TTAA 6 cut(s) 567, 1199, 1206, 1625, 1707, 1925
Tru9I TTAA 6 cut(s) 567, 1199, 1206, 1625, 1707, 1925
TseFI GTSAC 3 cut(s) 62, 95, 1823
TseI GCWGC 1 cut(s) 1343
Tsp45I GTSAC 3 cut(s) 62, 95, 1823
TspDTI ATGAA 9 cut(s) 858, 889, 1070, 1235, 1431, 1871, 2000, 2083, 2114
TspGWI ACGGA 4 cut(s) 83, 1074, 1258, 1368
Tth111I GACNNNGTC 1 cut(s) 1151
VpaK11BI GGWCC 4 cut(s) 174, 257, 371, 1780
XapI RAATTY 5 cut(s) 920, 1014, 1181, 1362, 1841
XceI RCATGY 3 cut(s) 47, 124, 395
XmiI GTMKAC 2 cut(s) 313, 1875
XmnI GAANNNNTTC 2 cut(s) 300, 865
Zsp2I ATGCAT 2 cut(s) 1312, 2080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.