RchiOBHm_Chr5g0037361

Prolyl endopeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011215
Physical Location & Seq
Forward (+)
31782297 .. 31784105
1809 bp
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UTR
Exon/CDS
Intron
PRQ31608

Sequence Viewer

Length: 471 bp
ATGGATCTGATCCATTGCTACTCTATGGCTATGGTTCTTACGAGGGTAAACCATGGAGAATTTTGTTGGATCGGGGTTTTATTTACTATAGCTCATATTCGTGGTGGTGGTGAAATGGGTAGGAAATGGTATGAGAATGGGAAGTTACTGAAGAAGAAAAATACTTTTACAGATTTTATTGCCTATGCTGAATATTTGATTGAAAAGAAATATTGTTCAAAAGAAAAATTAAGTATAGATGGAAGGAGTGCTGGTGGATTGCTCATTGGTGCTGTTCTTAATATGAGACCTGATTTGTTCAACGCTGCTGTTGCTGGAGTGCCTTTTGTTGATGTGTTGACTACAGTGCTTGACCCAACAATCCCTCTCACAACTTCAGAGTGGGAGGAATGGGGTGATCCGCGTAGAGAAGAATTCTACTATTACATGAAGTCATATTCTCCTGTTGATATGACACAAGAATTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05142 ko05143 map05142 map05143
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

156

Amino Acids

17.93

Weight (kDa)

5.63

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S9 PF00326 25 - 151 1.1e-41 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50380 AT1G50380
fragaria_vesca FvH4_4g37301
malus_domestica MD16G1004600.v1.1
prunus_persica Prupe.1G351000_v2.0.a1 Prupe.1G351200_v2.0.a1 Prupe.1G351200_v2.0.a1
pyrus_communis pycom16g00020 pycom16g00030
rosa_chinensis RchiOBHm_Chr4g0447131 RchiOBHm_Chr5g0037361
rosa_laevigata RLG00000005602
rosa_multiflora Rmu_ssc0000178.1_g000010
rosa_roxburghii Rroxscaffold_5G00387470
rosa_rugosa Rorug04G0378500
rosa_samantha Rh4AG439600 Rh4BG448700 Rh4CG465700 Rh4DG447100
rosa_wichuraiana Rw4G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 403
AciI CCGC 1 cut(s) 401
AclWI GGATC 4 cut(s) 4, 12, 77, 392
AcsI RAATTY 3 cut(s) 59, 413, 461
AcuI CTGAAG 2 cut(s) 170, 360
AgsI TTSAA 3 cut(s) 203, 219, 301
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 4 cut(s) 4, 12, 77, 392
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 3 cut(s) 59, 413, 461
AsuHPI GGTGA 2 cut(s) 122, 407
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 280
BfmI CTRYAG 2 cut(s) 87, 342
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bse3DI GCAATG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 280
Bsp143I GATC 4 cut(s) 4, 9, 69, 397
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 1 cut(s) 401
BspFNI CGCG 1 cut(s) 403
BspPI GGATC 4 cut(s) 4, 12, 77, 392
BspTNI GGTCTC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 4 cut(s) 4, 9, 69, 397
BssT1I CCWWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 346
BstDSI CCRYGG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 403
BstKTI GATC 4 cut(s) 7, 12, 72, 400
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 4, 9, 69, 397
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 87, 342
BstUI CGCG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 351
CviAII CATG 2 cut(s) 53, 427
CviJI RGCY 2 cut(s) 29, 92
CviKI_1 RGCY 2 cut(s) 29, 92
DpnI GATC 4 cut(s) 6, 11, 71, 399
DpnII GATC 4 cut(s) 4, 9, 69, 397
Eco130I CCWWGG 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 280
Eco57I CTGAAG 2 cut(s) 170, 360
EcoRI GAATTC 2 cut(s) 413, 461
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 56, 430
FatI CATG 2 cut(s) 52, 426
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 336
Hin1II CATG 2 cut(s) 56, 430
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HphI GGTGA 2 cut(s) 122, 407
Hpy166II GTNNAC 2 cut(s) 49, 339
Hpy188I TCNGA 2 cut(s) 9, 379
Hpy8I GTNNAC 2 cut(s) 49, 339
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 56, 430
Kzo9I GATC 4 cut(s) 4, 9, 69, 397
LpnPI CCDG 4 cut(s) 237, 300, 303, 456
Lsp1109I GCAGC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 144
MalI GATC 4 cut(s) 6, 11, 71, 399
MboI GATC 4 cut(s) 4, 9, 69, 397
MboII GAAGA 3 cut(s) 163, 166, 422
MflI RGATCY 1 cut(s) 4
MluCI AATT 4 cut(s) 59, 227, 413, 461
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 3 cut(s) 36, 375, 379
MseI TTAA 2 cut(s) 230, 279
MslI CAYNNNNRTG 1 cut(s) 99
MvnI CGCG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 311
NcoI CCATGG 1 cut(s) 52
NdeII GATC 4 cut(s) 4, 9, 69, 397
NlaIII CATG 2 cut(s) 56, 430
PkrI GCNGC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 230, 279
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 4 cut(s) 4, 9, 69, 397
SetI ASST 2 cut(s) 94, 292
SfcI CTRYAG 2 cut(s) 87, 342
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 4 cut(s) 59, 227, 413, 461
SsiI CCGC 1 cut(s) 401
SspI AATATT 2 cut(s) 194, 212
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 346
TasI AATT 4 cut(s) 59, 227, 413, 461
Tru1I TTAA 2 cut(s) 230, 279
Tru9I TTAA 2 cut(s) 230, 279
TscAI CASTG 1 cut(s) 351
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 443
TspRI CASTG 1 cut(s) 351
XapI RAATTY 3 cut(s) 59, 413, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.