Rmu_ssc0000178.1_g000010

Prolyl endopeptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000178.1
OG0011215
Physical Location & Seq
Forward (+)
36190 .. 39228
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000178.1_g000010.1.cds

Sequence Viewer

Length: 1608 bp
atgaggagaacgcatctgtggcgtagtggagtgagctctgcaaacctgtttgtgaagctcccactctcagtactgcttgtgtcgtcggcaattgtccccgtccggcctttgacgtcgtcatcagtcaggatgagccaccagactccttctcctcctccggtggcgaagaaggtggagcataagatggagttgttcagcgacgtgagagtagacaactactattggcttcgcgacgattctcgctccgaccctgacgtcctctcttatcttcaacaggagaacgattacactaatttcctcatgtccggaactaagaaatttgaacaagagctttatgctgagatccgagggcggatcaaggaggatgatatatccgcacctgagcgaaaaggtcagtactattactatacaaggacgttgctaggtaaggagtattgtcagcattgtcgacgcctagtaccaaacaatgaggctcctcattctgtacatgataccatgcccatcggacctgatgctcctcccgagcatgtaatcttggatgagaatatcaaggctcaaactcatgcctattatagcattggtgcatttaaggttagtccaaataacaaattggtggcatatgcagaagataccaaaggaaatgaaatttatacagtttatgtcattgacgctgacactggagctcctgtgggtcaacctctagtcaatgtaacttcctatctagaatgggctggcgatgatgctttggcttatatcacaatggatgccactctccggcctgacaaggcatggttacataagttgggaacagaacagtcaagtgactcctgcctctatcatgaaaaggacgatatgttttctcttgaccttcaagcttccgagagcaaaaagttcttgtttgttgcatctgaaagtaaaactacaagattcaacttttaccttgatgctttgaggcctgaaggtgggcttgtggttctgactcctcgtcaagatggcattgatacatatgttagccatcgaggaaatcatttttttataaagaggagaagtgatcagtttttcaattctgaagttgttgcctgttcagtggaaaatacatctgaaactacagttcttcttccccacagggagagtgttaaaattcaggatctatgtctttttagtgatcaccttgttgtatatgagcgtgaagacggcctaccaaaagtcactatctatcacctgccggatgttggacaaccacttaaaagacttcagggtggtcaagctgttaatttttcggatcccacgtactctgtagatccatcagaatcagaatatagttccagcattttacgatattcttatagctcaatgaaaacacctccctctgtatatgattatgatatgaagactggcatttctgttttgaagaagattgaaactgttttgggaggttttgaagaatcaaagtatgttactgaaaggaaatgggctagtgctccagatggtactcagattccaatatcaattgtttacaggaaggacattataaagcttgatggatctgatccattgctactctatggctatggttcttacgaggtaacaaaagaattcatagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05142 ko05143 map05142 map05143
Pfam Domains
Protein Families
Peptidase_S9 Peptidase_S9_N

Protein Analysis

535

Amino Acids

60.71

Weight (kDa)

5.53

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50380 AT1G50380
fragaria_vesca FvH4_4g37301
malus_domestica MD16G1004600.v1.1
prunus_persica Prupe.1G351000_v2.0.a1 Prupe.1G351200_v2.0.a1 Prupe.1G351200_v2.0.a1
pyrus_communis pycom16g00020 pycom16g00030
rosa_chinensis RchiOBHm_Chr4g0447131 RchiOBHm_Chr5g0037361
rosa_laevigata RLG00000005602
rosa_multiflora Rmu_ssc0000178.1_g000010
rosa_roxburghii Rroxscaffold_5G00387470
rosa_rugosa Rorug04G0378500
rosa_samantha Rh4AG439600 Rh4BG448700 Rh4CG465700 Rh4DG447100
rosa_wichuraiana Rw4G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1037, 1532
AarI CACCTGC 1 cut(s) 1230
AasI GACNNNNNNGTC 1 cut(s) 254
AatII GACGTC 2 cut(s) 116, 258
Acc36I ACCTGC 1 cut(s) 1230
AccI GTMKAC 2 cut(s) 210, 448
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 2 cut(s) 352, 375
AclWI GGATC 8 cut(s) 337, 362, 1155, 1277, 1290, 1295, 1544, 1552
AcsI RAATTY 4 cut(s) 317, 645, 1140, 1595
AcuI CTGAAG 3 cut(s) 978, 1089, 1238
AcyI GRCGYC 3 cut(s) 113, 255, 451
AfaI GTAC 6 cut(s) 72, 398, 459, 486, 1292, 1492
AfiI CCNNNNNNNGG 3 cut(s) 774, 962, 1232
AgsI TTSAA 8 cut(s) 272, 323, 872, 931, 1063, 1411, 1421, 1442
AhdI GACNNNNNGTC 1 cut(s) 984
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 8 cut(s) 36, 58, 331, 683, 875, 1268, 1350, 1537
AluI AGCT 8 cut(s) 36, 58, 331, 683, 875, 1268, 1350, 1537
Alw21I GWGCWC 3 cut(s) 38, 685, 1483
AlwI GGATC 8 cut(s) 337, 362, 1155, 1277, 1290, 1295, 1544, 1552
Ama87I CYCGRG 1 cut(s) 521
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 4 cut(s) 104, 776, 953, 1195
ApoI RAATTY 4 cut(s) 317, 645, 1140, 1595
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 1160, 1211
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 506
BaeI ACNNNNGTAYC 2 cut(s) 993, 1026
BamHI GGATCC 1 cut(s) 1282
BanII GRGCYC 2 cut(s) 38, 685
BarI GAAGNNNNNNTAC 2 cut(s) 1182, 1214
BbsI GAAGAC 2 cut(s) 1197, 1397
Bbv12I GWGCWC 3 cut(s) 38, 685, 1483
BccI CCATC 7 cut(s) 178, 509, 986, 1023, 1312, 1481, 1535
BceAI ACGGC 1 cut(s) 1210
BclI TGATCA 2 cut(s) 1051, 1165
BfaI CTAG 5 cut(s) 422, 455, 701, 722, 1476
BfmI CTRYAG 2 cut(s) 1107, 1296
BfuAI ACCTGC 1 cut(s) 1230
BmcAI AGTACT 2 cut(s) 72, 398
Bme18I GGWCC 1 cut(s) 506
BmeRI GACNNNNNGTC 1 cut(s) 984
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 2 cut(s) 474, 1284
BmsI GCATC 6 cut(s) 22, 502, 730, 754, 914, 934
BpiI GAAGAC 2 cut(s) 1197, 1397
BpmI CTGGAG 2 cut(s) 699, 1467
Bpu10I CCTNAGC 1 cut(s) 381
BsaAI YACGTR 1 cut(s) 1290
BsaHI GRCGYC 3 cut(s) 113, 255, 451
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 2 cut(s) 157, 305
BsaXI ACNNNNNCTCC 6 cut(s) 133, 163, 667, 672, 697, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 774, 962, 1232
Bse1I ACTGG 2 cut(s) 682, 1399
Bse3DI GCAATG 1 cut(s) 1553
BseAI TCCGGA 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 5 cut(s) 135, 370, 544, 769, 1234
BseLI CCNNNNNNNGG 3 cut(s) 774, 962, 1232
BseMI GCAATG 1 cut(s) 1553
BseMII CTCAG 4 cut(s) 81, 330, 372, 1508
BseNI ACTGG 2 cut(s) 682, 1399
BseRI GAGGAG 7 cut(s) 19, 141, 144, 465, 507, 972, 1057
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 106, 778, 955, 1197
BsiHKAI GWGCWC 3 cut(s) 38, 685, 1483
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 5 cut(s) 103, 158, 306, 775, 1226
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 774, 962, 1232
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 4 cut(s) 106, 778, 955, 1197
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 38, 685, 1483
Bsp13I TCCGGA 1 cut(s) 305
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
Bsp68I TCGCGA 1 cut(s) 231
BspACI CCGC 2 cut(s) 352, 375
BspANI GGCC 4 cut(s) 106, 778, 955, 1197
BspCNI CTCAG 4 cut(s) 80, 331, 373, 1507
BspEI TCCGGA 1 cut(s) 305
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 2 cut(s) 474, 1284
BspMI ACCTGC 1 cut(s) 1230
BspPI GGATC 8 cut(s) 337, 362, 1155, 1277, 1290, 1295, 1544, 1552
BsrDI GCAATG 1 cut(s) 1553
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 2 cut(s) 682, 1399
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
BssNI GRCGYC 3 cut(s) 113, 255, 451
Bst4CI ACNGT 4 cut(s) 655, 816, 1111, 1426
BstACI GRCGYC 3 cut(s) 113, 255, 451
BstAUI TGTACA 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 1290
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 5 cut(s) 67, 312, 339, 381, 1494
BstF5I GGATG 5 cut(s) 135, 370, 544, 769, 1234
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 9 cut(s) 345, 357, 1054, 1150, 1168, 1285, 1303, 1547, 1552
BstMBI GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 530
BstSFI CTRYAG 2 cut(s) 1107, 1296
BstUI CGCG 1 cut(s) 231
BstV2I GAAGAC 2 cut(s) 1197, 1397
BstX2I RGATCY 5 cut(s) 342, 1147, 1282, 1300, 1544
BstYI RGATCY 5 cut(s) 342, 1147, 1282, 1300, 1544
BsuRI GGCC 4 cut(s) 106, 778, 955, 1197
BtgZI GCGATG 1 cut(s) 750
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 5 cut(s) 135, 370, 544, 769, 1234
BtsIMutI CAGTG 2 cut(s) 675, 1092
BtuMI TCGCGA 1 cut(s) 231
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 1 cut(s) 733
CciI TCATGA 1 cut(s) 838
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 2 cut(s) 459, 677
Csp6I GTAC 6 cut(s) 71, 397, 458, 485, 1291, 1491
CviAII CATG 7 cut(s) 301, 488, 496, 527, 563, 789, 839
CviQI GTAC 6 cut(s) 71, 397, 458, 485, 1291, 1491
DdeI CTNAG 5 cut(s) 67, 312, 339, 381, 1494
DpnI GATC 9 cut(s) 344, 356, 1053, 1149, 1167, 1284, 1302, 1546, 1551
DpnII GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
DrdI GACNNNNNNGTC 1 cut(s) 254
DriI GACNNNNNGTC 1 cut(s) 984
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 984
EciI GGCGGA 1 cut(s) 367
Ecl136II GAGCTC 2 cut(s) 36, 683
Eco147I AGGCCT 1 cut(s) 955
Eco24I GRGCYC 2 cut(s) 38, 685
Eco47I GGWCC 1 cut(s) 506
Eco53kI GAGCTC 2 cut(s) 36, 683
Eco57I CTGAAG 3 cut(s) 978, 1089, 1238
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 2 cut(s) 36, 683
EcoRI GAATTC 1 cut(s) 1595
EcoT38I GRGCYC 2 cut(s) 38, 685
FaeI CATG 7 cut(s) 304, 491, 499, 530, 566, 792, 842
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 1 cut(s) 80
FatI CATG 7 cut(s) 300, 487, 495, 526, 562, 788, 838
FauNDI CATATG 2 cut(s) 619, 1006
FbaI TGATCA 2 cut(s) 1051, 1165
FblI GTMKAC 2 cut(s) 210, 448
FokI GGATG 5 cut(s) 142, 377, 551, 776, 1241
FriOI GRGCYC 2 cut(s) 38, 685
FspBI CTAG 5 cut(s) 422, 455, 701, 722, 1476
GsuI CTGGAG 2 cut(s) 699, 1467
HaeIII GGCC 4 cut(s) 106, 778, 955, 1197
HapII CCGG 5 cut(s) 103, 158, 306, 775, 1226
HgaI GACGC 2 cut(s) 459, 677
Hin1I GRCGYC 3 cut(s) 113, 255, 451
Hin1II CATG 7 cut(s) 304, 491, 499, 530, 566, 792, 842
HincII GTYRAC 2 cut(s) 449, 695
HindII GTYRAC 2 cut(s) 449, 695
HindIII AAGCTT 2 cut(s) 873, 1535
HinfI GANTC 8 cut(s) 142, 236, 824, 927, 979, 1310, 1445, 1498
HpaII CCGG 5 cut(s) 103, 158, 306, 775, 1226
HphI GGTGA 2 cut(s) 1160, 1211
Hpy166II GTNNAC 4 cut(s) 211, 449, 695, 1516
Hpy8I GTNNAC 4 cut(s) 211, 449, 695, 1516
Hpy99I CGWCG 5 cut(s) 88, 118, 203, 236, 453
HpyAV CCTTC 5 cut(s) 156, 163, 878, 953, 1516
HpyCH4III ACNGT 4 cut(s) 655, 816, 1111, 1426
HpyCH4IV ACGT 5 cut(s) 113, 201, 255, 416, 1289
HpyCH4V TGCA 4 cut(s) 41, 584, 623, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 5 cut(s) 67, 312, 339, 381, 1494
HpySE526I ACGT 5 cut(s) 113, 201, 255, 416, 1289
Hsp92I GRCGYC 3 cut(s) 113, 255, 451
Hsp92II CATG 7 cut(s) 304, 491, 499, 530, 566, 792, 842
Kpn2I TCCGGA 1 cut(s) 305
Ksp22I TGATCA 2 cut(s) 1051, 1165
Kzo9I GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
LmnI GCTCC 8 cut(s) 63, 175, 248, 478, 520, 680, 688, 1486
LweI GCATC 6 cut(s) 22, 502, 730, 754, 914, 934
MaeI CTAG 5 cut(s) 422, 455, 701, 722, 1476
MaeII ACGT 5 cut(s) 113, 201, 255, 416, 1289
MaeIII GTNAC 6 cut(s) 709, 792, 821, 1207, 1456, 1585
MalI GATC 9 cut(s) 344, 356, 1053, 1149, 1167, 1284, 1302, 1546, 1551
MboI GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
MfeI CAATTG 2 cut(s) 90, 1509
MflI RGATCY 5 cut(s) 342, 1147, 1282, 1300, 1544
MhlI GDGCHC 3 cut(s) 38, 685, 1483
MlyI GAGTC 3 cut(s) 136, 818, 973
MmeI TCCRAC 2 cut(s) 270, 1213
MroI TCCGGA 1 cut(s) 305
MseI TTAA 5 cut(s) 588, 1137, 1245, 1272, 1606
MspI CCGG 5 cut(s) 103, 158, 306, 775, 1226
MunI CAATTG 2 cut(s) 90, 1509
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeI CATATG 2 cut(s) 619, 1006
NdeII GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
NlaIII CATG 7 cut(s) 304, 491, 499, 530, 566, 792, 842
NlaIV GGNNCC 2 cut(s) 474, 1284
NmuCI GTSAC 2 cut(s) 821, 1207
NruI TCGCGA 1 cut(s) 231
NspI RCATGY 1 cut(s) 530
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 1 cut(s) 1230
PceI AGGCCT 1 cut(s) 955
PcsI WCGNNNNNNNCGW 1 cut(s) 1286
PfeI GAWTC 5 cut(s) 236, 927, 1310, 1445, 1498
PflFI GACNNNGTC 1 cut(s) 115
PleI GAGTC 3 cut(s) 136, 818, 973
PpsI GAGTC 3 cut(s) 136, 818, 973
Ppu21I YACGTR 1 cut(s) 1290
PsiI TTATAA 2 cut(s) 1037, 1532
Psp124BI GAGCTC 2 cut(s) 38, 685
PspN4I GGNNCC 2 cut(s) 474, 1284
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 5 cut(s) 342, 1147, 1282, 1300, 1544
PsyI GACNNNGTC 1 cut(s) 115
RruI TCGCGA 1 cut(s) 231
RsaI GTAC 6 cut(s) 72, 398, 459, 486, 1292, 1492
RsaNI GTAC 6 cut(s) 71, 397, 458, 485, 1291, 1491
SacI GAGCTC 2 cut(s) 38, 685
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 5 cut(s) 588, 1137, 1245, 1272, 1606
Sau3AI GATC 9 cut(s) 342, 354, 1051, 1147, 1165, 1282, 1300, 1544, 1549
Sau96I GGNCC 1 cut(s) 506
ScaI AGTACT 2 cut(s) 72, 398
SchI GAGTC 3 cut(s) 136, 818, 973
SduI GDGCHC 3 cut(s) 38, 685, 1483
SfaNI GCATC 6 cut(s) 22, 502, 730, 754, 914, 934
SfcI CTRYAG 2 cut(s) 1107, 1296
SinI GGWCC 1 cut(s) 506
SseBI AGGCCT 1 cut(s) 955
SsiI CCGC 2 cut(s) 352, 375
SspMI CTAG 5 cut(s) 422, 455, 701, 722, 1476
SstI GAGCTC 2 cut(s) 38, 685
StuI AGGCCT 1 cut(s) 955
TaaI ACNGT 4 cut(s) 655, 816, 1111, 1426
TaiI ACGT 5 cut(s) 116, 204, 258, 419, 1292
TaqI TCGA 2 cut(s) 448, 1018
TatI WGTACW 3 cut(s) 70, 396, 484
TfiI GAWTC 5 cut(s) 236, 927, 1310, 1445, 1498
Tru1I TTAA 5 cut(s) 588, 1137, 1245, 1272, 1606
Tru9I TTAA 5 cut(s) 588, 1137, 1245, 1272, 1606
TscAI CASTG 2 cut(s) 682, 1092
TseFI GTSAC 2 cut(s) 821, 1207
Tsp45I GTSAC 2 cut(s) 821, 1207
TspDTI ATGAA 5 cut(s) 657, 855, 1370, 1403, 1588
TspRI CASTG 2 cut(s) 682, 1092
Tth111I GACNNNGTC 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 4 cut(s) 317, 645, 1140, 1595
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 1 cut(s) 530
XmiI GTMKAC 2 cut(s) 210, 448
XspI CTAG 5 cut(s) 422, 455, 701, 722, 1476
ZraI GACGTC 2 cut(s) 114, 256
ZrmI AGTACT 2 cut(s) 72, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.