AT1G50430

dwf5, pa, le, st7r, 7red dwf5 (dwarf 5)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18681932 .. 18685652
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50430.1

Sequence Viewer

Length: 1299 bp
ATGGCGGAGACTGTACATTCTCCGATCGTTACTTACGCATCGATGTTATCGCTTCTCGCCTTCTGTCCACCTTTCGTCATTCTCCTATGGTACACAATGGTTCATCAGGATGGTTCTGTTACTCAGACCTTTGGCTTCTTTTGGGAGAATGGAGTTCAAGGACTTATCAACATATGGCCAAGACCCACTTTGATTGCTTGGAAAATTATATTTTGCTATGGAGCATTTGAAGCTATTCTTCAGCTGCTTCTGCCTGGTAAAAGAGTTGAGGGTCCAATATCTCCAGCCGGAAACCGACCAGTTTACAAGGCCAATGGTCTGGCTGCTTACTTTGTGACACTAGCAACCTATCTTGGTCTTTGGTGGTTTGGAATCTTCAACCCTGCAATTGTCTATGATCACTTGGGTGAAATATTTTCGGCACTAATATTCGGAAGCTTCATATTTTGTGTTTTGTTGTACATAAAAGGCCATGTTGCACCTTCATCAAGTGACTCTGGTTCATGTGGTAACCTAATAATTGACTTCTATTGGGGCATGGAGTTGTACCCTCGAATTGGTAAGAGCTTTGACATCAAGGTGTTTACTAATTGCAGATTCGGAATGATGTCTTGGGCAGTTCTTGCAGTCACGTACTGCATAAAACAGTATGAAATAAATGGCAAAGTATCTGATTCAATGCTGGTGAACACCATCCTGATGCTGGTGTATGTCACAAAATTCTTCTGGTGGGAAGCTGGTTATTGGAACACCATGGACATTGCACATGACCGAGCTGGATTCTATATATGCTGGGGTTGTCTAGTGTGGGTGCCTTCTGTCTACACTTCTCCAGGCATGTACCTTGTGAACCACCCCGTCGAACTCGGAACTCAGTTGGCAATATACATTCTCGTTGCAGGAATTCTGTGCATTTACATAAACTATGACTGTGATAGACAAAGGCAAGAGTTCAGGAGGACAAACGGGAAATGTTTGGTTTGGGGAAGGGCCCCGTCAAAGATTGTGGCGTCGTATACTACAACATCTGGTGAAACTAAAACTAGTCTTCTCTTAACGTCTGGATGGTGGGGATTGGCTCGTCATTTCCATTATGTTCCTGAGATCTTAAGTGCTTTCTTCTGGACCGTACCGGCTCTCTTCGATAACTTCTTGGCATACTTCTACGTCATATTTCTCACCCTTCTTCTCTTTGATCGAGCCAAGAGAGACGATGACCGATGCCGATCAAAGTATGGGAAATATTGGAAGCTGTATTGTGAGAAAGTCAAATACAGGATCATTCCGGGAATTTATTGA

Protein Analysis

432

Amino Acids

49.59

Weight (kDa)

8.65

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERG4_ERG24 PF01222 62 - 432 1.1e-84 Ergosterol biosynthesis ERG4/ERG24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012401)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 811
AccI GTMKAC 2 cut(s) 822, 1016
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 1286
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 3 cut(s) 719, 903, 1290
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 7 cut(s) 15, 92, 461, 548, 635, 842, 1131
AfiI CCNNNNNNNGG 2 cut(s) 557, 703
AflII CTTAAG 1 cut(s) 1108
AgsI TTSAA 4 cut(s) 158, 230, 379, 678
AhlI ACTAGT 1 cut(s) 1043
AjnI CCWGG 2 cut(s) 253, 832
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AleI CACNNNNGTG 1 cut(s) 405
AluBI AGCT 7 cut(s) 233, 244, 438, 567, 737, 776, 1252
AluI AGCT 7 cut(s) 233, 244, 438, 567, 737, 776, 1252
Alw26I GTCTC 2 cut(s) 2, 1203
AlwI GGATC 1 cut(s) 1286
AoxI GGCC 4 cut(s) 176, 309, 469, 990
ApaI GGGCCC 1 cut(s) 994
ApeKI GCWGC 2 cut(s) 244, 323
ApoI RAATTY 3 cut(s) 719, 903, 1290
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 4 cut(s) 272, 990, 991, 1125
AsuC2I CCSGG 1 cut(s) 1287
AsuHPI GGTGA 4 cut(s) 419, 697, 1043, 1171
AvaII GGWCC 2 cut(s) 272, 1125
BaeGI GKGCMC 1 cut(s) 994
BalI TGGCCA 1 cut(s) 178
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 1040
BbvI GCAGC 2 cut(s) 231, 310
BccI CCATC 3 cut(s) 104, 701, 1059
BciT130I CCWGG 2 cut(s) 255, 834
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 1 cut(s) 1287
BcoDI GTCTC 2 cut(s) 2, 1203
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 3 cut(s) 341, 803, 1044
BfrI CTTAAG 1 cut(s) 1108
BglII AGATCT 1 cut(s) 1104
BisI GCNGC 2 cut(s) 245, 324
BlsI GCNGC 2 cut(s) 246, 325
Bme1390I CCNGG 3 cut(s) 255, 834, 1287
Bme18I GGWCC 2 cut(s) 272, 1125
BmgT120I GGNCC 4 cut(s) 272, 990, 991, 1125
BmiI GGNNCC 4 cut(s) 273, 813, 992, 993
BmrFI CCNGG 3 cut(s) 255, 834, 1287
BmsI GCATC 3 cut(s) 47, 690, 1211
BpiI GAAGAC 1 cut(s) 1040
BpmI CTGGAG 2 cut(s) 267, 816
BpuMI CCSGG 1 cut(s) 1287
Bsa29I ATCGAT 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 1225
BsaHI GRCGYC 1 cut(s) 1010
BsaJI CCNNGG 1 cut(s) 753
Bsc4I CCNNNNNNNGG 2 cut(s) 557, 703
Bse118I RCCGGY 1 cut(s) 1132
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 759
Bse8I GATNNNNATC 1 cut(s) 1225
BseBI CCWGG 2 cut(s) 255, 834
BseCI ATCGAT 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 753
BseGI GGATG 3 cut(s) 115, 693, 1070
BseJI GATNNNNATC 1 cut(s) 1225
BseLI CCNNNNNNNGG 2 cut(s) 557, 703
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 3 cut(s) 137, 887, 1092
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 2 cut(s) 231, 310
BseYI CCCAGC 1 cut(s) 792
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 4 cut(s) 178, 311, 471, 992
BshNI GGYRCC 1 cut(s) 811
BshVI ATCGAT 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 288, 1133, 1286
BslI CCNNNNNNNGG 2 cut(s) 557, 703
BsmAI GTCTC 2 cut(s) 2, 1203
BsmBI CGTCTC 1 cut(s) 1203
BsnI GGCC 4 cut(s) 178, 311, 471, 992
Bsp120I GGGCCC 1 cut(s) 990
Bsp1286I GDGCHC 1 cut(s) 994
Bsp1407I TGTACA 2 cut(s) 13, 459
Bsp143I GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 1 cut(s) 5
BspANI GGCC 4 cut(s) 178, 311, 471, 992
BspCNI CTCAG 3 cut(s) 136, 886, 1093
BspDI ATCGAT 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 273, 813, 992, 993
BspPI GGATC 1 cut(s) 1286
BspT107I GGYRCC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 1108
BsrDI GCAATG 1 cut(s) 759
BsrFI RCCGGY 1 cut(s) 1132
BsrGI TGTACA 2 cut(s) 13, 459
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 1132
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
BssNAI GTATAC 1 cut(s) 1017
BssNI GRCGYC 1 cut(s) 1010
BssT1I CCWWGG 1 cut(s) 753
Bst1107I GTATAC 1 cut(s) 1017
Bst2UI CCWGG 2 cut(s) 255, 834
Bst4CI ACNGT 4 cut(s) 13, 648, 932, 1129
Bst6I CTCTTC 1 cut(s) 1145
BstACI GRCGYC 1 cut(s) 1010
BstAFI CTTAAG 1 cut(s) 1108
BstAPI GCANNNNNTGC 1 cut(s) 623
BstAUI TGTACA 2 cut(s) 13, 459
BstBAI YACGTR 1 cut(s) 633
BstDEI CTNAG 3 cut(s) 123, 873, 1101
BstDSI CCRYGG 1 cut(s) 753
BstEII GGTNACC 1 cut(s) 509
BstF5I GGATG 3 cut(s) 115, 693, 1070
BstKTI GATC 6 cut(s) 27, 400, 1107, 1198, 1229, 1281
BstMAI GTCTC 2 cut(s) 2, 1203
BstMBI GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 230, 250, 623
BstNI CCWGG 2 cut(s) 255, 834
BstNSI RCATGY 1 cut(s) 841
BstPI GGTNACC 1 cut(s) 509
BstSCI CCNGG 3 cut(s) 253, 832, 1285
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 2 cut(s) 231, 310
BstV2I GAAGAC 1 cut(s) 1040
BstX2I RGATCY 1 cut(s) 1104
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 1104
BstZ17I GTATAC 1 cut(s) 1017
Bsu15I ATCGAT 1 cut(s) 41
BsuRI GGCC 4 cut(s) 178, 311, 471, 992
BsuTUI ATCGAT 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 115, 693, 1070
Cfr10I RCCGGY 1 cut(s) 1132
Cfr13I GGNCC 4 cut(s) 272, 990, 991, 1125
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 999
Csp6I GTAC 7 cut(s) 14, 91, 460, 547, 634, 841, 1130
CspCI CAANNNNNGTGG 4 cut(s) 175, 210, 987, 1022
CviAII CATG 6 cut(s) 473, 504, 538, 754, 767, 838
CviQI GTAC 7 cut(s) 14, 91, 460, 547, 634, 841, 1130
DdeI CTNAG 3 cut(s) 123, 873, 1101
DpnI GATC 6 cut(s) 26, 399, 1106, 1197, 1228, 1280
DpnII GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 753
Eco24I GRGCYC 1 cut(s) 994
Eco47I GGWCC 2 cut(s) 272, 1125
Eco57I CTGAAG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 509
EcoO109I RGGNCCY 2 cut(s) 990, 991
EcoO65I GGTNACC 1 cut(s) 509
EcoRI GAATTC 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 253, 832
EcoT14I CCWWGG 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 1203
FaeI CATG 6 cut(s) 476, 507, 541, 757, 770, 841
FalI AAGNNNNNCTT 4 cut(s) 172, 204, 222, 254
FatI CATG 6 cut(s) 472, 503, 537, 753, 766, 837
FauNDI CATATG 1 cut(s) 173
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 2 cut(s) 822, 1016
Fnu4HI GCNGC 2 cut(s) 245, 324
FokI GGATG 3 cut(s) 122, 680, 1077
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 2 cut(s) 245, 324
FspBI CTAG 3 cut(s) 341, 803, 1044
GluI GCNGC 2 cut(s) 245, 324
GsaI CCCAGC 1 cut(s) 796
GsuI CTGGAG 2 cut(s) 267, 816
HaeIII GGCC 4 cut(s) 178, 311, 471, 992
HapII CCGG 3 cut(s) 288, 1133, 1286
HgaI GACGC 1 cut(s) 999
Hin1I GRCGYC 1 cut(s) 1010
Hin1II CATG 6 cut(s) 476, 507, 541, 757, 770, 841
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 5 cut(s) 372, 494, 597, 674, 780
HpaII CCGG 3 cut(s) 288, 1133, 1286
HphI GGTGA 4 cut(s) 419, 697, 1043, 1171
Hpy166II GTNNAC 8 cut(s) 68, 93, 304, 585, 688, 823, 850, 1017
Hpy188I TCNGA 6 cut(s) 24, 126, 434, 602, 673, 869
Hpy188III TCNNGA 6 cut(s) 107, 697, 955, 1062, 1100, 1123
Hpy8I GTNNAC 8 cut(s) 68, 93, 304, 585, 688, 823, 850, 1017
Hpy99I CGWCG 2 cut(s) 863, 1015
HpyAV CCTTC 5 cut(s) 70, 492, 825, 981, 1193
HpyCH4III ACNGT 4 cut(s) 13, 648, 932, 1129
HpyCH4IV ACGT 3 cut(s) 632, 1058, 1167
HpyCH4V TGCA 8 cut(s) 386, 479, 594, 626, 639, 764, 899, 912
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 250, 623
HpyF3I CTNAG 3 cut(s) 123, 873, 1101
HpySE526I ACGT 3 cut(s) 632, 1058, 1167
Hsp92I GRCGYC 1 cut(s) 1010
Hsp92II CATG 6 cut(s) 476, 507, 541, 757, 770, 841
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 2 cut(s) 231, 310
LweI GCATC 3 cut(s) 47, 690, 1211
MaeI CTAG 3 cut(s) 341, 803, 1044
MaeII ACGT 3 cut(s) 632, 1058, 1167
MaeIII GTNAC 7 cut(s) 28, 118, 334, 491, 509, 628, 712
MalI GATC 6 cut(s) 26, 399, 1106, 1197, 1228, 1280
MboI GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
MboII GAAGA 7 cut(s) 230, 367, 715, 1040, 1111, 1132, 1178
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 1104
MhlI GDGCHC 1 cut(s) 994
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 8 cut(s) 204, 387, 519, 555, 589, 719, 903, 1290
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 3 cut(s) 262, 561, 951
Mox20I TGGCCA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 178
MseI TTAA 2 cut(s) 1055, 1109
MslI CAYNNNNRTG 4 cut(s) 108, 405, 578, 698
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 244
MspCI CTTAAG 1 cut(s) 1108
MspI CCGG 3 cut(s) 288, 1133, 1286
MspR9I CCNGG 3 cut(s) 255, 834, 1287
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 2 cut(s) 255, 834
MwoI GCNNNNNNNGC 3 cut(s) 230, 250, 623
NciI CCSGG 1 cut(s) 1287
NcoI CCATGG 1 cut(s) 753
NdeI CATATG 1 cut(s) 173
NdeII GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
NlaIII CATG 6 cut(s) 476, 507, 541, 757, 770, 841
NlaIV GGNNCC 4 cut(s) 273, 813, 992, 993
NmuCI GTSAC 4 cut(s) 334, 491, 628, 712
NspI RCATGY 1 cut(s) 841
OliI CACNNNNGTG 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 372, 597, 674, 780
PfoI TCCNGGA 1 cut(s) 1285
PkrI GCNGC 2 cut(s) 246, 325
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Ppu21I YACGTR 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 253, 832
PspEI GGTNACC 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 792
PspGI CCWGG 2 cut(s) 253, 832
PspN4I GGNNCC 4 cut(s) 273, 813, 992, 993
PspOMI GGGCCC 1 cut(s) 990
PspPI GGNCC 4 cut(s) 272, 990, 991, 1125
PsuI RGATCY 1 cut(s) 1104
PvuI CGATCG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 7 cut(s) 15, 92, 461, 548, 635, 842, 1131
RsaNI GTAC 7 cut(s) 14, 91, 460, 547, 634, 841, 1130
RseI CAYNNNNRTG 4 cut(s) 108, 405, 578, 698
SaqAI TTAA 2 cut(s) 1055, 1109
SatI GCNGC 2 cut(s) 245, 324
Sau3AI GATC 6 cut(s) 24, 397, 1104, 1195, 1226, 1278
Sau96I GGNCC 4 cut(s) 272, 990, 991, 1125
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 3 cut(s) 255, 834, 1287
SduI GDGCHC 1 cut(s) 994
SfaNI GCATC 3 cut(s) 47, 690, 1211
SinI GGWCC 2 cut(s) 272, 1125
SmiMI CAYNNNNRTG 4 cut(s) 108, 405, 578, 698
SmlI CTYRAG 1 cut(s) 1108
SmoI CTYRAG 1 cut(s) 1108
SpeI ACTAGT 1 cut(s) 1043
Sse9I AATT 8 cut(s) 204, 387, 519, 555, 589, 719, 903, 1290
SsiI CCGC 1 cut(s) 5
SspI AATATT 3 cut(s) 414, 429, 1244
SspMI CTAG 3 cut(s) 341, 803, 1044
StyD4I CCNGG 3 cut(s) 253, 832, 1285
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 4 cut(s) 13, 648, 932, 1129
TaiI ACGT 3 cut(s) 635, 1061, 1170
TaqI TCGA 5 cut(s) 41, 553, 861, 1143, 1198
TaqII GACCGA 2 cut(s) 786, 1233
TasI AATT 8 cut(s) 204, 387, 519, 555, 589, 719, 903, 1290
TatI WGTACW 2 cut(s) 13, 459
TfiI GAWTC 4 cut(s) 372, 597, 674, 780
Tru1I TTAA 2 cut(s) 1055, 1109
Tru9I TTAA 2 cut(s) 1055, 1109
TseFI GTSAC 4 cut(s) 334, 491, 628, 712
TseI GCWGC 2 cut(s) 244, 323
Tsp45I GTSAC 4 cut(s) 334, 491, 628, 712
TspDTI ATGAA 5 cut(s) 92, 430, 474, 492, 666
Vha464I CTTAAG 1 cut(s) 1108
VpaK11BI GGWCC 2 cut(s) 272, 1125
XapI RAATTY 3 cut(s) 719, 903, 1290
XceI RCATGY 1 cut(s) 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmiI GTMKAC 2 cut(s) 822, 1016
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 3 cut(s) 341, 803, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.