MD17G1163300.v1.1

7-dehydrocholesterol reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
16155517 .. 16161448
5932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1163300.v1.1.491

Sequence Viewer

Length: 1305 bp
ATGGGGGAGACAAAGACCGTACATTCCCCATTGGTGACGTACGCTTCCATGCTATCGCTGCTTTCTCTCTGCCCTCCCTTTGTAATTCTACTATGGTATACAATGGTACATGCTGATGGCTCCATTTTGCAAACTTGGGATTACTTGAGGCAGCATGGACTGCAGGGGTTTATCAAAATATGGCCAATACCTACTGCCACTGCATGGAAGATTATTGCCTGTTACGGTGCTTTTGAGGCTGCACTTCAGCTTCTTTTACCTGGAAAAAGGGTTGAGGGGCCAATATCTCCAGCTGGGAATCGACCTGTCTACAAGGCAAATGGTATGGCGGCCTATTTTGTAACGTTGACTACCTACCTTGGCCTTTGGTGGTTCGGGATATTCAACCCTACAGTTGTTTATGATCATCTGGGAGAAATATTTTCTACCCTCATTTTTGGAAGTTTCATCTTTTGTATTTTCCTGTACATAAAAGGCCATGTGGCACCATCTTCCACTGATTCTGGATCTTCTGGGAATGCAATAATTGACTTCTATTGGGGCTTGGAGCTGTATCCACGAATTGGTAAATACTTCGATATCAAAGTTTTCACAAACTGCAGATTTGGGATGATGTCCTGGGCAGTTCTTGCTGTGACCTATTGCATAAAGCAGTATGAAGTTAATGGGAAAGTAGCTGACTCAATGCTTGTGAATACTATATTGATGCTGGTGTATGTCACAAAGTTTTTCTGGTGGGAGGCTGGATACTGGAATACAATGGATATTGCACATGATCGAGCGGGATTTTATATTTGCTGGGGTTGCTTGGTCTGGGTTCCATCTATTTATACATCTCCTGGCATGTACCTGGTCAACCATCCTATAAATCTTGGAACTCAGCTAGCACTTTTTATTCTGGTGGCCGGGATCCTTTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGGAGAACAAATGGCAAATGCTTGGTTTGGGGGAGAGCTCCATCAAAGATAGTTGCTTCATACACTACCACATCCGGGGAAACAAAGACAAGCCTTCTTCTAACCTCAGGATGGTGGGGTTTATCACGTCATTTCCACTACGTGCCAGAAATATCAGCTGCCTTCTTCTGGACTGTTCCAGCTCTTTTCAATCATTTTCTACCATACTTCTATGTGGTTTTCCTGACAATCCTTCTGCTTGACCGAGCCAAGAGGGATGATGACCGATGTCGCTCCAAGTATGGCAAATACTGGAAGTTATATTGTCAGAAGGTTTCCTACAGGGTCATCCCCGGAATCTATTGA

Protein Analysis

435

Amino Acids

49.72

Weight (kDa)

8.97

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERG4_ERG24 PF01222 41 - 434 4e-86 Ergosterol biosynthesis ERG4/ERG24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012401)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AccB7I CCANNNNNTGG 2 cut(s) 204, 563
AccBSI CCGCTC 1 cut(s) 782
AccI GTMKAC 2 cut(s) 98, 309
AciI CCGC 2 cut(s) 329, 782
AclI AACGTT 1 cut(s) 344
AclWI GGATC 3 cut(s) 514, 904, 917
AcoI YGGCCR 2 cut(s) 182, 903
AcsI RAATTY 1 cut(s) 956
AcuI CTGAAG 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 1102
AfaI GTAC 5 cut(s) 21, 41, 108, 467, 848
AfiI CCNNNNNNNGG 5 cut(s) 204, 563, 1035, 1071, 1128
AgsI TTSAA 2 cut(s) 385, 1150
AjiI CACGTC 1 cut(s) 1088
AjnI CCWGG 4 cut(s) 259, 617, 838, 849
AluBI AGCT 8 cut(s) 250, 293, 550, 677, 883, 998, 1118, 1142
AluI AGCT 8 cut(s) 250, 293, 550, 677, 883, 998, 1118, 1142
Alw21I GWGCWC 1 cut(s) 1000
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 3 cut(s) 514, 904, 917
AoxI GGCC 6 cut(s) 182, 278, 330, 361, 475, 903
ApeKI GCWGC 4 cut(s) 58, 151, 239, 1118
ApoI RAATTY 1 cut(s) 956
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 3 cut(s) 907, 1036, 1293
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 883
AxyI CCTNAGG 1 cut(s) 1066
BalI TGGCCA 1 cut(s) 184
BamHI GGATCC 1 cut(s) 909
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 1000
BarI GAAGNNNNNNTAC 2 cut(s) 1262, 1294
Bbv12I GWGCWC 1 cut(s) 1000
BbvI GCAGC 4 cut(s) 45, 163, 226, 1105
BccI CCATC 6 cut(s) 110, 496, 829, 867, 1009, 1065
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 4 cut(s) 261, 619, 840, 851
BciVI GTATCC 2 cut(s) 564, 740
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 3 cut(s) 907, 1036, 1293
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 4 cut(s) 161, 390, 598, 1279
BfuI GTATCC 2 cut(s) 564, 740
BisI GCNGC 5 cut(s) 59, 152, 240, 330, 1119
BlsI GCNGC 5 cut(s) 60, 153, 241, 331, 1120
Bme1390I CCNGG 7 cut(s) 261, 619, 840, 851, 907, 1036, 1293
BmgBI CACGTC 1 cut(s) 1088
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 5 cut(s) 121, 279, 486, 819, 911
BmrFI CCNGG 7 cut(s) 261, 619, 840, 851, 907, 1036, 1293
BmsI GCATC 1 cut(s) 696
BmtI GCTAGC 1 cut(s) 887
BoxI GACNNNNGTC 1 cut(s) 1227
BpmI CTGGAG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 3 cut(s) 907, 1036, 1293
BsaAI YACGTR 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 358, 618, 1035, 1291
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 563, 1035, 1071, 1128
Bse1I ACTGG 2 cut(s) 755, 1256
Bse21I CCTNAGG 1 cut(s) 1066
BseBI CCWGG 4 cut(s) 261, 619, 840, 851
BseDI CCNNGG 4 cut(s) 358, 618, 1035, 1291
BseGI GGATG 6 cut(s) 615, 859, 1031, 1076, 1222, 1287
BseLI CCNNNNNNNGG 5 cut(s) 204, 563, 1035, 1071, 1128
BseMII CTCAG 2 cut(s) 893, 1080
BseNI ACTGG 2 cut(s) 755, 1256
BseXI GCAGC 4 cut(s) 45, 163, 226, 1105
BseYI CCCAGC 2 cut(s) 293, 798
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 6 cut(s) 184, 280, 332, 363, 477, 905
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 3 cut(s) 906, 1035, 1293
BsiWI CGTACG 1 cut(s) 39
BslI CCNNNNNNNGG 5 cut(s) 204, 563, 1035, 1071, 1128
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 6 cut(s) 184, 280, 332, 363, 477, 905
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 4 cut(s) 403, 506, 775, 909
BspACI CCGC 2 cut(s) 329, 782
BspANI GGCC 6 cut(s) 184, 280, 332, 363, 477, 905
BspCNI CTCAG 2 cut(s) 892, 1079
BspLI GGNNCC 5 cut(s) 121, 279, 486, 819, 911
BspMAI CTGCAG 2 cut(s) 165, 602
BspOI GCTAGC 1 cut(s) 887
BspPI GGATC 3 cut(s) 514, 904, 917
BspT107I GGYRCC 1 cut(s) 484
BsrBI CCGCTC 1 cut(s) 782
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 2 cut(s) 755, 1256
BssECI CCNNGG 4 cut(s) 358, 618, 1035, 1291
BssMI GATC 4 cut(s) 403, 506, 775, 909
BssNAI GTATAC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 358
Bst1107I GTATAC 1 cut(s) 99
Bst2UI CCWGG 4 cut(s) 261, 619, 840, 851
Bst4CI ACNGT 4 cut(s) 19, 227, 394, 1135
BstAPI GCANNNNNTGC 2 cut(s) 160, 629
BstAUI TGTACA 1 cut(s) 465
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 1 cut(s) 885
BstDEI CTNAG 2 cut(s) 879, 1066
BstF5I GGATG 6 cut(s) 615, 859, 1031, 1076, 1222, 1287
BstKTI GATC 4 cut(s) 406, 509, 778, 912
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 4 cut(s) 403, 506, 775, 909
BstMWI GCNNNNNNNGC 5 cut(s) 58, 160, 236, 629, 804
BstNI CCWGG 4 cut(s) 261, 619, 840, 851
BstNSI RCATGY 2 cut(s) 113, 847
BstPAI GACNNNNGTC 1 cut(s) 1227
BstSCI CCNGG 7 cut(s) 259, 617, 838, 849, 905, 1034, 1291
BstSFI CTRYAG 4 cut(s) 161, 390, 598, 1279
BstV1I GCAGC 4 cut(s) 45, 163, 226, 1105
BstX2I RGATCY 2 cut(s) 506, 909
BstYI RGATCY 2 cut(s) 506, 909
BstZ17I GTATAC 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 1066
BsuI GTATCC 2 cut(s) 564, 740
BsuRI GGCC 6 cut(s) 184, 280, 332, 363, 477, 905
BtrI CACGTC 1 cut(s) 1088
BtsCI GGATG 6 cut(s) 615, 859, 1031, 1076, 1222, 1287
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 495
Cac8I GCNNGC 1 cut(s) 885
Cfr13I GGNCC 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 849
Csp6I GTAC 5 cut(s) 20, 40, 107, 466, 847
CviAII CATG 7 cut(s) 49, 110, 155, 204, 479, 773, 844
CviQI GTAC 5 cut(s) 20, 40, 107, 466, 847
DdeI CTNAG 2 cut(s) 879, 1066
DpnI GATC 4 cut(s) 405, 508, 777, 911
DpnII GATC 4 cut(s) 403, 506, 775, 909
DraIII CACNNNGTG 1 cut(s) 1102
EaeI YGGCCR 2 cut(s) 182, 903
Ecl136II GAGCTC 1 cut(s) 998
Eco130I CCWWGG 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 1000
Eco32I GATATC 1 cut(s) 580
Eco53kI GAGCTC 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 1066
EcoICRI GAGCTC 1 cut(s) 998
EcoRII CCWGG 4 cut(s) 259, 617, 838, 849
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 7 cut(s) 52, 113, 158, 207, 482, 776, 847
FatI CATG 7 cut(s) 48, 109, 154, 203, 478, 772, 843
FauI CCCGC 1 cut(s) 775
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 2 cut(s) 98, 309
Fnu4HI GCNGC 5 cut(s) 59, 152, 240, 330, 1119
FokI GGATG 6 cut(s) 622, 846, 1018, 1083, 1229, 1274
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 5 cut(s) 59, 152, 240, 330, 1119
FspBI CTAG 1 cut(s) 884
GluI GCNGC 5 cut(s) 59, 152, 240, 330, 1119
GsaI CCCAGC 2 cut(s) 297, 802
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 6 cut(s) 184, 280, 332, 363, 477, 905
HapII CCGG 3 cut(s) 906, 1035, 1293
Hin1II CATG 7 cut(s) 52, 113, 158, 207, 482, 776, 847
HincII GTYRAC 2 cut(s) 348, 856
HindII GTYRAC 2 cut(s) 348, 856
HinfI GANTC 4 cut(s) 298, 500, 680, 1296
HpaII CCGG 3 cut(s) 906, 1035, 1293
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 4 cut(s) 99, 310, 348, 856
Hpy188I TCNGA 2 cut(s) 963, 1269
Hpy188III TCNNGA 5 cut(s) 376, 504, 1068, 1129, 1183
Hpy8I GTNNAC 4 cut(s) 99, 310, 348, 856
HpyAV CCTTC 4 cut(s) 1064, 1132, 1202, 1264
HpyCH4III ACNGT 4 cut(s) 19, 227, 394, 1135
HpyCH4IV ACGT 4 cut(s) 38, 344, 1087, 1101
HpyCH4V TGCA 9 cut(s) 130, 163, 203, 242, 521, 600, 645, 770, 918
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 160, 236, 629, 804
HpyF3I CTNAG 2 cut(s) 879, 1066
HpySE526I ACGT 4 cut(s) 38, 344, 1087, 1101
Hsp92II CATG 7 cut(s) 52, 113, 158, 207, 482, 776, 847
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 4 cut(s) 403, 506, 775, 909
LmnI GCTCC 4 cut(s) 125, 547, 1003, 1238
Lsp1109I GCAGC 4 cut(s) 45, 163, 226, 1105
LweI GCATC 1 cut(s) 696
MabI ACCWGGT 1 cut(s) 849
MaeI CTAG 1 cut(s) 884
MaeII ACGT 4 cut(s) 38, 344, 1087, 1101
MaeIII GTNAC 6 cut(s) 34, 221, 340, 634, 718, 938
MalI GATC 4 cut(s) 405, 508, 777, 911
MbiI CCGCTC 1 cut(s) 782
MboI GATC 4 cut(s) 403, 506, 775, 909
MboII GAAGA 5 cut(s) 220, 483, 501, 1049, 1117
MflI RGATCY 2 cut(s) 506, 909
MhlI GDGCHC 1 cut(s) 1000
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 4 cut(s) 84, 525, 561, 956
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 1 cut(s) 674
MnlI CCTC 8 cut(s) 84, 141, 229, 268, 440, 733, 1075, 1206
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 184
MspA1I CMGCKG 2 cut(s) 293, 1118
MspI CCGG 3 cut(s) 906, 1035, 1293
MspR9I CCNGG 7 cut(s) 261, 619, 840, 851, 907, 1036, 1293
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 4 cut(s) 261, 619, 840, 851
MwoI GCNNNNNNNGC 5 cut(s) 58, 160, 236, 629, 804
NciI CCSGG 3 cut(s) 907, 1036, 1293
NdeII GATC 4 cut(s) 403, 506, 775, 909
NheI GCTAGC 1 cut(s) 883
NlaIII CATG 7 cut(s) 52, 113, 158, 207, 482, 776, 847
NlaIV GGNNCC 5 cut(s) 121, 279, 486, 819, 911
NmuCI GTSAC 4 cut(s) 34, 634, 718, 938
NspI RCATGY 2 cut(s) 113, 847
PctI GAATGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 298, 500, 1296
Pfl23II CGTACG 1 cut(s) 39
PflMI CCANNNNNTGG 2 cut(s) 204, 563
PkrI GCNGC 5 cut(s) 60, 153, 241, 331, 1120
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Ppu21I YACGTR 1 cut(s) 1102
PshAI GACNNNNGTC 1 cut(s) 1227
Psp124BI GAGCTC 1 cut(s) 1000
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 4 cut(s) 259, 617, 838, 849
PspFI CCCAGC 2 cut(s) 293, 798
PspGI CCWGG 4 cut(s) 259, 617, 838, 849
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 5 cut(s) 121, 279, 486, 819, 911
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 2 cut(s) 165, 602
PsuI RGATCY 2 cut(s) 506, 909
PvuII CAGCTG 2 cut(s) 293, 1118
RsaI GTAC 5 cut(s) 21, 41, 108, 467, 848
RsaNI GTAC 5 cut(s) 20, 40, 107, 466, 847
RseI CAYNNNNRTG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 1000
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 5 cut(s) 59, 152, 240, 330, 1119
Sau3AI GATC 4 cut(s) 403, 506, 775, 909
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 7 cut(s) 261, 619, 840, 851, 907, 1036, 1293
SduI GDGCHC 1 cut(s) 1000
SexAI ACCWGGT 1 cut(s) 849
SfaNI GCATC 1 cut(s) 696
SfcI CTRYAG 4 cut(s) 161, 390, 598, 1279
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 4 cut(s) 84, 525, 561, 956
SsiI CCGC 2 cut(s) 329, 782
SspI AATATT 1 cut(s) 420
SspMI CTAG 1 cut(s) 884
SstI GAGCTC 1 cut(s) 1000
StyD4I CCNGG 7 cut(s) 259, 617, 838, 849, 905, 1034, 1291
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 4 cut(s) 19, 227, 394, 1135
TaiI ACGT 4 cut(s) 41, 347, 1090, 1104
TaqI TCGA 3 cut(s) 301, 576, 778
TaqII GACCGA 2 cut(s) 1218, 1239
TasI AATT 4 cut(s) 84, 525, 561, 956
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 298, 500, 1296
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 205, 502
TseFI GTSAC 4 cut(s) 34, 634, 718, 938
TseI GCWGC 4 cut(s) 58, 151, 239, 1118
Tsp45I GTSAC 4 cut(s) 34, 634, 718, 938
TspDTI ATGAA 3 cut(s) 436, 672, 1008
TspRI CASTG 2 cut(s) 205, 502
Van91I CCANNNNNTGG 2 cut(s) 204, 563
XapI RAATTY 1 cut(s) 956
XceI RCATGY 2 cut(s) 113, 847
XmiI GTMKAC 2 cut(s) 98, 309
XspI CTAG 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.