Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012401

Physical Location & Seq

Genomic Coordinates Reverse (-)

69229599 .. 69235324

Gene Structure 5726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG473000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCAGCATACTTTGTGACATTGACTACGTACCTTGGCCTTTGGTGGTTTGGGATATTCAACCCTACAATTGTTTATGATCATTTGGGAGAAATATTTTCGGCCCTCATTTTTGGAAGTTTAGTGTTTTGTGTTCTCCTGCACATAAAAGGTCACTTGGCACCGTCTTCCACAGATTCTGGCTCTTCTGGGAATGTAATAATTGATTTTTACTGGGGCATGGAACTGTATCCACGAATTGGTAAAAACTTTGATATCAAAGTTTTCACGAACTGTAGATTTGGGATGATGTCCTGGGCCGTTCTTGCTGTGACCTATAGCATAAAGCAGTATGAGTTGAATGGGAGAGTAGCTGATTCAATGCTTGTAAATACCATACTGATGCTGGTGTATGTCACAAAGTTCTTTTGGTGGGAGGCTGGATACTGGAATACAATGGATATCGCACATGATCGAGCGGGATTTTATATTTGCTGGGGTTGCTTGGTCTGGGTTCCATCTATTTATACCTCTCCTGGCATGTACTTGGTCAACCATCCTATAAATCTCGGCACTCAGCTAGCACTTTTTATTTTGGTTGCGGGGATTCTCTGCATATACATCAACTATGATTGCGACAGGCAAAGGCAAGAATTTCGCAGAACAAATGGCAAATGTTTAGTCTGGGGGAGAGCTCCATCAAAGATAGTTGCTTCATACACTACAACATCTGGGGAAACAAAGACGAGCCTTCTCTTAACCTCAGGATGGTGGGGTTTATCTCGCCATTTTCATTATGTGCCAGAAATATCAGCTGCCTTTTTCTGGACTGTTCCGGCTCTTTTCAATCATTTTCTACCATACTTCTATGTGGTGTTTCTCACCATCCTTCTATTAGACCGAGCAAAAAGGGATGATGATCGATGTCGATCCAAGTATGGGAAATACTGGAAATTATATTGTCAGAAGGTACCCTACAGAGTCATTCCTGGAATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009918 GO:0010817 GO:0012505 GO:0016020 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016627 GO:0031984 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

326

Amino Acids

37.73

Weight (kDa)

8.93

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	2 - 326	1e-73	Ergosterol biosynthesis ERG4/ERG24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50430 AT1G50430
fragaria_vesca	FvH4_6g37020 FvH4_6g37020 FvH4_6g37020
malus_domestica	MD09G1164900.v1.1 MD17G1163300.v1.1
prunus_persica	Prupe.3G022300_v2.0.a1 Prupe.3G022300_v2.0.a1
pyrus_communis	pycom09g08210
rosa_chinensis	RchiOBHm_Chr2g0149571
rosa_laevigata	RLG00000020424
rosa_multiflora	Rmu_sc0006867.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097980
rosa_rugosa	Rorug02G0412400
rosa_samantha	Rh2AG473000 Rh2BG484900 Rh2DG494100
rosa_wichuraiana	Rw2G038550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	949
AccB1I	GGYRCC	2 cut(s)	160, 949
AccB7I	CCANNNNNTGG	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	458
AciI	CCGC	2 cut(s)	458, 581
AclWI	GGATC	1 cut(s)	903
AcsI	RAATTY	2 cut(s)	632, 972
AfaI	GTAC	3 cut(s)	32, 524, 951
AfiI	CCNNNNNNNGG	4 cut(s)	239, 747, 804, 918
AgsI	TTSAA	4 cut(s)	61, 340, 360, 826
AjnI	CCWGG	3 cut(s)	293, 514, 967
AluBI	AGCT	4 cut(s)	353, 559, 674, 794
AluI	AGCT	4 cut(s)	353, 559, 674, 794
Alw21I	GWGCWC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	903
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	3 cut(s)	37, 102, 297
ApeKI	GCWGC	2 cut(s)	5, 794
ApoI	RAATTY	2 cut(s)	632, 972
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
Asp718I	GGTACC	1 cut(s)	949
AspS9I	GGNCC	2 cut(s)	103, 297
AsuHPI	GGTGA	1 cut(s)	853
AsuNHI	GCTAGC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	742
BanI	GGYRCC	2 cut(s)	160, 949
BanII	GRGCYC	1 cut(s)	676
BarI	GAAGNNNNNNTAC	2 cut(s)	938, 970
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	17, 781
BccI	CCATC	5 cut(s)	505, 543, 685, 741, 872
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	3 cut(s)	295, 516, 969
BciVI	GTATCC	2 cut(s)	240, 416
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	3 cut(s)	274, 316, 955
BfuI	GTATCC	2 cut(s)	240, 416
BisI	GCNGC	2 cut(s)	6, 795
BlsI	GCNGC	2 cut(s)	7, 796
Bme1390I	CCNGG	3 cut(s)	295, 516, 969
BmgT120I	GGNCC	2 cut(s)	103, 297
BmiI	GGNNCC	3 cut(s)	162, 495, 951
BmrFI	CCNGG	3 cut(s)	295, 516, 969
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	372
BmtI	GCTAGC	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	901
BsaAI	YACGTR	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	897, 907
BsaJI	CCNNGG	2 cut(s)	34, 294
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 747, 804, 918
Bse1I	ACTGG	3 cut(s)	218, 431, 932
Bse21I	CCTNAGG	1 cut(s)	742
Bse8I	GATNNNNATC	2 cut(s)	897, 907
BseBI	CCWGG	3 cut(s)	295, 516, 969
BseCI	ATCGAT	1 cut(s)	901
BseDI	CCNNGG	2 cut(s)	34, 294
BseGI	GGATG	5 cut(s)	291, 535, 752, 864, 898
BseJI	GATNNNNATC	2 cut(s)	897, 907
BseLI	CCNNNNNNNGG	4 cut(s)	239, 747, 804, 918
BseMII	CTCAG	2 cut(s)	569, 756
BseNI	ACTGG	3 cut(s)	218, 431, 932
BseXI	GCAGC	2 cut(s)	17, 781
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	39, 104, 299
BshNI	GGYRCC	2 cut(s)	160, 949
BshVI	ATCGAT	1 cut(s)	901
BsiHKAI	GWGCWC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	815
BslI	CCNNNNNNNGG	4 cut(s)	239, 747, 804, 918
BsnI	GGCC	3 cut(s)	39, 104, 299
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	4 cut(s)	79, 451, 898, 908
BspACI	CCGC	2 cut(s)	458, 581
BspANI	GGCC	3 cut(s)	39, 104, 299
BspCNI	CTCAG	2 cut(s)	568, 755
BspDI	ATCGAT	1 cut(s)	901
BspLI	GGNNCC	3 cut(s)	162, 495, 951
BspOI	GCTAGC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	903
BspQI	GCTCTTC	1 cut(s)	190
BspT107I	GGYRCC	2 cut(s)	160, 949
BsrBI	CCGCTC	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	218, 431, 932
BssECI	CCNNGG	2 cut(s)	34, 294
BssMI	GATC	4 cut(s)	79, 451, 898, 908
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	3 cut(s)	295, 516, 969
Bst4CI	ACNGT	4 cut(s)	165, 228, 275, 811
Bst6I	CTCTTC	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	2 cut(s)	555, 742
BstF5I	GGATG	5 cut(s)	291, 535, 752, 864, 898
BstKTI	GATC	4 cut(s)	82, 454, 901, 911
BstMBI	GATC	4 cut(s)	79, 451, 898, 908
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 480
BstNI	CCWGG	3 cut(s)	295, 516, 969
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	293, 514, 967
BstSFI	CTRYAG	3 cut(s)	274, 316, 955
BstSNI	TACGTA	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	17, 781
BstV2I	GAAGAC	1 cut(s)	159
Bsu15I	ATCGAT	1 cut(s)	901
Bsu36I	CCTNAGG	1 cut(s)	742
BsuI	GTATCC	2 cut(s)	240, 416
BsuRI	GGCC	3 cut(s)	39, 104, 299
BsuTUI	ATCGAT	1 cut(s)	901
BtsCI	GGATG	5 cut(s)	291, 535, 752, 864, 898
Cac8I	GCNNGC	1 cut(s)	561
CaiI	CAGNNNCTG	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	103, 297
ClaI	ATCGAT	1 cut(s)	901
Csp6I	GTAC	3 cut(s)	31, 523, 950
CviAII	CATG	3 cut(s)	220, 449, 520
CviQI	GTAC	3 cut(s)	31, 523, 950
DdeI	CTNAG	2 cut(s)	555, 742
DpnI	GATC	4 cut(s)	81, 453, 900, 910
DpnII	GATC	4 cut(s)	79, 451, 898, 908
Eam1104I	CTCTTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	674
Eco105I	TACGTA	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	676
Eco32I	GATATC	2 cut(s)	256, 442
Eco53kI	GAGCTC	1 cut(s)	674
Eco81I	CCTNAGG	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	674
EcoRII	CCWGG	3 cut(s)	293, 514, 967
EcoRV	GATATC	2 cut(s)	256, 442
EcoT14I	CCWWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	223, 452, 523
FatI	CATG	3 cut(s)	219, 448, 519
FauI	CCCGC	2 cut(s)	451, 574
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	6, 795
FokI	GGATG	5 cut(s)	298, 522, 759, 851, 905
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	2 cut(s)	6, 795
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	2 cut(s)	6, 795
GsaI	CCCAGC	1 cut(s)	478
HaeIII	GGCC	3 cut(s)	39, 104, 299
HapII	CCGG	1 cut(s)	815
Hin1II	CATG	3 cut(s)	223, 452, 523
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	4 cut(s)	176, 356, 586, 960
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	1 cut(s)	853
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	1 cut(s)	945
Hpy188III	TCNNGA	3 cut(s)	268, 744, 805
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	740, 878, 940
HpyCH4III	ACNGT	4 cut(s)	165, 228, 275, 811
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	142, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 480
HpyF3I	CTNAG	2 cut(s)	555, 742
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	223, 452, 523
KpnI	GGTACC	1 cut(s)	953
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 451, 898, 908
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	2 cut(s)	17, 781
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	4 cut(s)	16, 152, 310, 394
MalI	GATC	4 cut(s)	81, 453, 900, 910
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	4 cut(s)	79, 451, 898, 908
MboII	GAAGA	2 cut(s)	159, 177
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	6 cut(s)	69, 201, 237, 632, 932, 972
MlyI	GAGTC	1 cut(s)	969
MnlI	CCTC	4 cut(s)	116, 409, 520, 751
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	3 cut(s)	295, 516, 969
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	3 cut(s)	295, 516, 969
MwoI	GCNNNNNNNGC	2 cut(s)	305, 480
NdeII	GATC	4 cut(s)	79, 451, 898, 908
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	3 cut(s)	223, 452, 523
NlaIV	GGNNCC	3 cut(s)	162, 495, 951
NmeAIII	GCCGAG	1 cut(s)	528
NmuCI	GTSAC	4 cut(s)	16, 152, 310, 394
NspI	RCATGY	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	176, 356, 586
PflMI	CCANNNNNTGG	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	967
PkrI	GCNGC	2 cut(s)	7, 796
PleI	GAGTC	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	676
Psp6I	CCWGG	3 cut(s)	293, 514, 967
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	3 cut(s)	293, 514, 967
PspN4I	GGNNCC	3 cut(s)	162, 495, 951
PspPI	GGNCC	2 cut(s)	103, 297
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	794
RsaI	GTAC	3 cut(s)	32, 524, 951
RsaNI	GTAC	3 cut(s)	31, 523, 950
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	676
SapI	GCTCTTC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	2 cut(s)	6, 795
Sau3AI	GATC	4 cut(s)	79, 451, 898, 908
Sau96I	GGNCC	2 cut(s)	103, 297
SchI	GAGTC	1 cut(s)	969
ScrFI	CCNGG	3 cut(s)	295, 516, 969
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	3 cut(s)	274, 316, 955
SmiMI	CAYNNNNRTG	1 cut(s)	380
SnaBI	TACGTA	1 cut(s)	30
Sse9I	AATT	6 cut(s)	69, 201, 237, 632, 932, 972
SsiI	CCGC	2 cut(s)	458, 581
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	1 cut(s)	676
StyD4I	CCNGG	3 cut(s)	293, 514, 967
StyI	CCWWGG	1 cut(s)	34
TaaI	ACNGT	4 cut(s)	165, 228, 275, 811
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	454, 901, 907
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	6 cut(s)	69, 201, 237, 632, 932, 972
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	176, 356, 586
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TseFI	GTSAC	4 cut(s)	16, 152, 310, 394
TseI	GCWGC	2 cut(s)	5, 794
Tsp45I	GTSAC	4 cut(s)	16, 152, 310, 394
TspDTI	ATGAA	2 cut(s)	684, 761
Van91I	CCANNNNNTGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	632, 972
XceI	RCATGY	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.