Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Forward (+)

18866197 .. 18867204

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G50900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTTCTTCTTCAATCTCATTCTCCTGTGCACCTTCTTTGGCCACCTCACTCTTCTCCACCACTTCTTCTTCCCCAAGGCTGCTCTCCTCTAGATTTCTCGGAACCCGAAACTTAAAGCTTCGGATCCGACCTGCCAGACTAGGACCCTCCAATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAATGGTGTCGATGCTGAAAATGCCGGAATCTATGGCAGCCAGTCTCGAGATGATTTCGACAGAGACGACGTCGAACAGTATTTCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCTCTTCTTAACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGACCTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCTGATGGAAGAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACTCGACTCAAAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.19

Weight (kDa)

5.88

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	174
AciI	CCGC	2 cut(s)	375, 459
AclWI	GGATC	4 cut(s)	121, 134, 481, 493
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	155, 174
AgsI	TTSAA	5 cut(s)	15, 162, 181, 277, 315
AluBI	AGCT	3 cut(s)	121, 326, 409
AluI	AGCT	3 cut(s)	121, 326, 409
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	240, 249
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	4 cut(s)	121, 134, 481, 493
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	42
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	82, 228
Asp700I	GAANNNNTTC	2 cut(s)	310, 327
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	338, 398
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	69, 240
BccI	CCATC	2 cut(s)	313, 443
BcoDI	GTCTC	2 cut(s)	240, 249
BfaI	CTAG	2 cut(s)	93, 143
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	3 cut(s)	83, 229, 375
BlsI	GCNGC	3 cut(s)	84, 230, 376
Bme18I	GGWCC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	4 cut(s)	106, 128, 148, 307
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	77, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 174
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	2 cut(s)	232, 350
BseDI	CCNNGG	2 cut(s)	77, 502
BseLI	CCNNNNNNNGG	2 cut(s)	155, 174
BseNI	ACTGG	2 cut(s)	232, 350
BseRI	GAGGAG	2 cut(s)	79, 419
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	69, 240
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	216, 420
BslI	CCNNNNNNNGG	2 cut(s)	155, 174
BsmAI	GTCTC	2 cut(s)	240, 249
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	126, 399, 486, 498
BspACI	CCGC	2 cut(s)	375, 459
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	4 cut(s)	106, 128, 148, 307
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	4 cut(s)	121, 134, 481, 493
BspQI	GCTCTTC	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	232, 350
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	77, 502
BssMI	GATC	4 cut(s)	126, 399, 486, 498
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	77, 502
Bst4CI	ACNGT	2 cut(s)	270, 479
Bst6I	CTCTTC	3 cut(s)	59, 333, 477
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	396
BstKTI	GATC	4 cut(s)	129, 402, 489, 501
BstMAI	GTCTC	2 cut(s)	240, 249
BstMBI	GATC	4 cut(s)	126, 399, 486, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	69, 240
BstX2I	RGATCY	2 cut(s)	126, 486
BstYI	RGATCY	2 cut(s)	126, 486
BsuRI	GGCC	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	146
CseI	GACGC	1 cut(s)	452
CviAII	CATG	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	4 cut(s)	128, 401, 488, 500
DpnII	GATC	4 cut(s)	126, 399, 486, 498
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	59, 333, 477
EarI	CTCTTC	3 cut(s)	59, 333, 477
Eco130I	CCWWGG	2 cut(s)	77, 502
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	77, 502
ErhI	CCWWGG	2 cut(s)	77, 502
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	225, 284, 290
FalI	AAGNNNNNCTT	4 cut(s)	154, 186, 315, 347
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	3 cut(s)	83, 229, 375
Fsp4HI	GCNGC	3 cut(s)	83, 229, 375
FspBI	CTAG	2 cut(s)	93, 143
GluI	GCNGC	3 cut(s)	83, 229, 375
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	216, 420
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	219, 514
HpaII	CCGG	2 cut(s)	216, 420
HphI	GGTGA	2 cut(s)	338, 398
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	104, 126, 131
Hpy188III	TCNNGA	4 cut(s)	93, 162, 237, 239
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	2 cut(s)	263, 266
HpyAV	CCTTC	3 cut(s)	45, 296, 377
HpyCH4III	ACNGT	2 cut(s)	270, 479
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	32, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	126, 399, 486, 498
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	40, 147, 151, 160, 229, 245, 363, 433
Lsp1109I	GCAGC	2 cut(s)	69, 240
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	2 cut(s)	93, 143
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	4 cut(s)	128, 401, 488, 500
MboI	GATC	4 cut(s)	126, 399, 486, 498
MboII	GAAGA	7 cut(s)	3, 46, 60, 63, 320, 465, 494
MflI	RGATCY	2 cut(s)	126, 486
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	4 cut(s)	58, 100, 160, 397
Mox20I	TGGCCA	1 cut(s)	44
MroXI	GAANNNNTTC	2 cut(s)	310, 327
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	2 cut(s)	116, 333
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	216, 420
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	4 cut(s)	126, 399, 486, 498
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	4 cut(s)	106, 128, 148, 307
NmuCI	GTSAC	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PdmI	GAANNNNTTC	2 cut(s)	310, 327
PfeI	GAWTC	1 cut(s)	219
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	84, 230, 376
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
PspN4I	GGNNCC	4 cut(s)	106, 128, 148, 307
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	126, 486
PsyI	GACNNNGTC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	116, 333
SatI	GCNGC	3 cut(s)	83, 229, 375
Sau3AI	GATC	4 cut(s)	126, 399, 486, 498
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	378
Sfr274I	CTCGAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SsiI	CCGC	2 cut(s)	375, 459
SspMI	CTAG	2 cut(s)	93, 143
StyI	CCWWGG	2 cut(s)	77, 502
TaaI	ACNGT	2 cut(s)	270, 479
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	7 cut(s)	201, 238, 249, 264, 402, 465, 512
TaqII	GACCGA	1 cut(s)	424
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	116, 333
Tru9I	TTAA	2 cut(s)	116, 333
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	82, 228
Tsp45I	GTSAC	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	174
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	237
XmnI	GAANNNNTTC	2 cut(s)	310, 327
XspI	CTAG	2 cut(s)	93, 143
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.