Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Reverse (-)

33008979 .. 33012821

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG271100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTTCCATTCCATGTACTACTGCCCCTACCCACTCATGCTTCGCCTCCAACTCCTTCAATTCTTCAACTTTTTCAGTCAAACTCAATACCCAGTTTCTGGGTACCCGAAGTAGGCTGGGTCGGGTCAGACCCTTTGGTCTTGGACCCTCCAATGGCTCCAGAGCCAAGTGCTGGTTCAAGTTCGGTAAAAACGGTATAGATGCTGAGGGTGCTGGAATCTATGGAAGCCAATCCCGTGATGATTATGATAAAGATGATGTTGAGCAGTATTTCAACTACATGGGAATGCTTGCTGTTGAGGGTACGTATGATAAGATGAATGCTCTTTTAAGCCAAAATATCCACCCAGTAGATATTCTATTGTTGATGGCTGCCTCAGAAGGTGACAAGCCGAAAATTGAAGAACTTTTAAGAGCCGGAGCTAGTTACTCTGTTAAAGATGCTGATGGGCGAACAGCTCTTGATAGGGCTGCAAGTGATGAAATTAAAGACTTCATTCTTGGTTTTTCAGTTCAAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.04

Weight (kDa)

6.11

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	138
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	2 cut(s)	100, 174
AfaI	GTAC	3 cut(s)	19, 106, 307
AfiI	CCNNNNNNNGG	4 cut(s)	100, 114, 155, 174
AgsI	TTSAA	6 cut(s)	61, 69, 181, 277, 404, 518
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	2 cut(s)	425, 461
AluI	AGCT	2 cut(s)	425, 461
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	374, 473
Asp718I	GGTACC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	361, 460
BccI	CCATC	2 cut(s)	364, 443
BfaI	CTAG	1 cut(s)	426
BisI	GCNGC	2 cut(s)	375, 474
BlsI	GCNGC	2 cut(s)	376, 475
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	106, 148, 160
BmrI	ACTGGG	2 cut(s)	88, 344
BmsI	GCATC	2 cut(s)	193, 433
BmuI	ACTGGG	2 cut(s)	88, 344
BpmI	CTGGAG	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 114, 155, 174
Bse1I	ACTGG	2 cut(s)	94, 350
BseLI	CCNNNNNNNGG	4 cut(s)	100, 114, 155, 174
BseMII	CTCAG	2 cut(s)	198, 393
BseNI	ACTGG	2 cut(s)	94, 350
BseXI	GCAGC	2 cut(s)	361, 460
BseYI	CCCAGC	1 cut(s)	118
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	420
BslI	CCNNNNNNNGG	4 cut(s)	100, 114, 155, 174
BsmI	GAATGC	2 cut(s)	294, 328
BspCNI	CTCAG	2 cut(s)	199, 392
BspLI	GGNNCC	3 cut(s)	106, 148, 160
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	94, 350
Bst4CI	ACNGT	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	207, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	361, 460
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	18, 105, 306
CviAII	CATG	4 cut(s)	15, 39, 283, 525
CviQI	GTAC	3 cut(s)	18, 105, 306
DdeI	CTNAG	2 cut(s)	207, 379
DrdI	GACNNNNNNGTC	1 cut(s)	138
DseDI	GACNNNNNNGTC	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	146
FaeI	CATG	4 cut(s)	18, 42, 286, 528
FaiI	YATR	8 cut(s)	16, 40, 200, 225, 249, 284, 312, 526
FatI	CATG	4 cut(s)	14, 38, 282, 524
Fnu4HI	GCNGC	2 cut(s)	375, 474
Fsp4HI	GCNGC	2 cut(s)	375, 474
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	2 cut(s)	375, 474
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	145
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	4 cut(s)	18, 42, 286, 528
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	131, 382
Hpy188III	TCNNGA	2 cut(s)	162, 464
HpyAV	CCTTC	2 cut(s)	67, 377
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	207, 379
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	4 cut(s)	18, 42, 286, 528
KpnI	GGTACC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	164, 422
LpnPI	CCDG	8 cut(s)	86, 104, 107, 160, 175, 201, 363, 433
Lsp1109I	GCAGC	2 cut(s)	361, 460
LweI	GCATC	2 cut(s)	193, 433
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	386, 428
MboII	GAAGA	2 cut(s)	57, 416
MluCI	AATT	3 cut(s)	61, 399, 486
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	58, 160, 202, 295, 388
MseI	TTAA	4 cut(s)	332, 413, 438, 489
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	294, 328
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	4 cut(s)	18, 42, 286, 528
NlaIV	GGNNCC	3 cut(s)	106, 148, 160
NmuCI	GTSAC	1 cut(s)	386
PctI	GAATGC	2 cut(s)	294, 328
PfeI	GAWTC	1 cut(s)	219
PflMI	CCANNNNNTGG	2 cut(s)	100, 174
PkrI	GCNGC	2 cut(s)	376, 475
Ppu21I	YACGTR	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	3 cut(s)	106, 148, 160
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	3 cut(s)	19, 106, 307
RsaNI	GTAC	3 cut(s)	18, 105, 306
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	332, 413, 438, 489
SatI	GCNGC	2 cut(s)	375, 474
Sau96I	GGNCC	1 cut(s)	146
SetI	ASST	4 cut(s)	311, 388, 427, 463
SfaNI	GCATC	2 cut(s)	193, 433
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	309
Sse9I	AATT	3 cut(s)	61, 399, 486
SspMI	CTAG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	1 cut(s)	311
TasI	AATT	3 cut(s)	61, 399, 486
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	4 cut(s)	332, 413, 438, 489
Tru9I	TTAA	4 cut(s)	332, 413, 438, 489
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	374, 473
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	335, 487, 498
Van91I	CCANNNNNTGG	2 cut(s)	100, 174
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.