Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Forward (+)

28410504 .. 28412680

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1207700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTTCAATTCCTTGTACTACAGCTGCTACCCACTTATTCTTCACCAAGAACTCCTTCAATTCTCCAACCAAATTCAGTACCCGGTTTCTGGGTACTCGGAATAGGCTCGGGTGGGTCCGACCCGTTGGTATTGGAGCCTCCAACGGGTCCAGAGCCAAGTGCTGGTTCAAATTTGGTAAAAACGGTGTGGGTGCTGAAGATGCTGGCATATATGGAAGCCAATCCCGTGATGATTATGATAAGGATGACGTTGAACAGTATTTCAACTACATGGGCATGCTTGCTGTGGAAGGTACATATGACAAGATGAATGCTCTTCTAAGCCAAAACATCCACCCAGTCGACATTTTGTTGTTGATGGCTGCCTCCGAAGGTGACCAGCCAAAAATTGAAGAACTTTTAAGAGCCGGTGCTAGTTACTCTGTCGAGGACGCTGATGGGCGAACAGCTCTTGATAGGGCTGCCAGTGACGAAATCAAAAACTTGATTCTTGGTTTTTCAGTTCAGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

5.69

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	74, 173
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	4 cut(s)	19, 82, 97, 298
AfiI	CCNNNNNNNGG	3 cut(s)	91, 147, 165
AgsI	TTSAA	6 cut(s)	9, 61, 172, 257, 268, 395
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 152, 184
AluBI	AGCT	2 cut(s)	26, 452
AluI	AGCT	2 cut(s)	26, 452
Ama87I	CYCGRG	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	26, 365, 464
ApoI	RAATTY	2 cut(s)	74, 173
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	118, 150
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	37, 389
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	118, 150
BbvI	GCAGC	3 cut(s)	13, 352, 451
BccI	CCATC	2 cut(s)	355, 434
BcnI	CCSGG	1 cut(s)	85
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	3 cut(s)	27, 366, 465
BlsI	GCNGC	3 cut(s)	28, 367, 466
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	118, 150
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	118, 150
BmiI	GGNNCC	3 cut(s)	119, 139, 151
BmrFI	CCNGG	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 147, 165
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	341, 468
BseGI	GGATG	2 cut(s)	253, 333
BseLI	CCNNNNNNNGG	3 cut(s)	91, 147, 165
BseNI	ACTGG	2 cut(s)	341, 468
BseXI	GCAGC	3 cut(s)	13, 352, 451
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	85, 411
BslI	CCNNNNNNNGG	3 cut(s)	91, 147, 165
BsmI	GAATGC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	110
BspLI	GGNNCC	3 cut(s)	119, 139, 151
BspQI	GCTCTTC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	341, 468
BssAI	RCCGGY	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	188, 261
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	208, 281, 285
BstDEI	CTNAG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	253, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	13, 352, 451
BtsCI	GGATG	2 cut(s)	253, 333
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	208, 281, 285
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	118, 150
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	4 cut(s)	18, 81, 96, 297
CviAII	CATG	3 cut(s)	274, 280, 516
CviQI	GTAC	4 cut(s)	18, 81, 96, 297
DdeI	CTNAG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	118, 150
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
FaeI	CATG	3 cut(s)	277, 283, 519
FaiI	YATR	9 cut(s)	212, 214, 216, 240, 275, 281, 301, 303, 517
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	3 cut(s)	273, 279, 515
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	27, 366, 465
FokI	GGATG	2 cut(s)	260, 320
Fsp4HI	GCNGC	3 cut(s)	27, 366, 465
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	3 cut(s)	27, 366, 465
HapII	CCGG	2 cut(s)	85, 411
HgaI	GACGC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	277, 283, 519
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	85, 411
HphI	GGTGA	2 cut(s)	37, 389
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	102, 122, 373, 510
Hpy188III	TCNNGA	2 cut(s)	153, 455
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	67, 287, 368
HpyCH4III	ACNGT	2 cut(s)	188, 261
HpyCH4IV	ACGT	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	277, 283, 519
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	77, 98, 151, 166, 192, 354, 395, 424, 481
Lsp1109I	GCAGC	3 cut(s)	13, 352, 451
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	377, 419, 470
MboII	GAAGA	4 cut(s)	34, 212, 311, 407
MluCI	AATT	5 cut(s)	9, 61, 74, 173, 390
MmeI	TCCRAC	3 cut(s)	92, 145, 168
MnlI	CCTC	3 cut(s)	151, 379, 424
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	85, 411
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	85
NdeI	CATATG	1 cut(s)	301
NlaIII	CATG	3 cut(s)	277, 283, 519
NlaIV	GGNNCC	3 cut(s)	119, 139, 151
NmuCI	GTSAC	2 cut(s)	377, 470
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	490
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	28, 367, 466
PspEI	GGTNACC	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	119, 139, 151
PspPI	GGNCC	2 cut(s)	118, 150
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	4 cut(s)	19, 82, 97, 298
RsaNI	GTAC	4 cut(s)	18, 81, 96, 297
RseI	CAYNNNNRTG	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	27, 366, 465
Sau96I	GGNCC	2 cut(s)	118, 150
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	5 cut(s)	28, 255, 298, 379, 454
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	118, 150
SmiMI	CAYNNNNRTG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	5 cut(s)	9, 61, 74, 173, 390
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	2 cut(s)	188, 261
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	345, 429
TasI	AATT	5 cut(s)	9, 61, 74, 173, 390
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	377, 470
TseI	GCWGC	3 cut(s)	26, 365, 464
Tsp45I	GTSAC	2 cut(s)	377, 470
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	118, 150
XapI	RAATTY	2 cut(s)	74, 173
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.