Rorug05G0171000

Protein LHCP TRANSLOCATION

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
15921908 .. 15932820
10913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0171000.1

Sequence Viewer

Length: 1578 bp
ATGGCGGCACGCATGCTGGCAGCTCGACCCTTCAAGCTCGTCTCACATTTGCCTTCCATGCACGCCTCGACTCCTCTCTTTGCTCGCCAGATTAGCATGGACGCAAAAGGCTTTGCTTCTCGGCTTGTTGATGCTGGTCTATTACGTAGTCAGGCCCTTATTGGAGGGAAATGGTCTGATGCATATGACGGGAACACTATAAAGGTTCACAACCCAGCAACTGGTGATGTCATAACAACCGTCCCATGCATGGGTCAAAATGAGACAAATGATGCAATATCCGCAGCCTCCGAGGCATTCAGTTCCTGGAGCAAGGTCACTAATGTGGAAAGGAGCAAATGTTTAAGGAAATGGTACGATCTACTAATTTCCCACAAAGAAGAACTTGGACAACTCATTACCCTGGAGCAAGGGAAACCTTTACAAGAAGCTATGGGTGAGGTGACCTATGGAGCTGGCTTTATTGAGTTCTTTGCTGAAGAGGCAAAACGTGTATATGGTGATATAATTCCATCGCCTCTGGCCGATCGACGGATGCTTGTTTTAAAGCAGCCTGTAGGTGTTGTTGGTGCAATCACTCCCTGGAACTTCCCATTGGCTATGATTACCCGCAAGGTTGGTCCTGCTCTTGCATGTGGCTGTACAGTGGTCATTAAACCCTCTGAACTTACACCCCTCACAGCCTTAGCAGCAGCTGAGCTTGCCCTGCAAGCTGGAATACCGCCGGGTGTGATGAATGTGGTAATGGGAAATGCTTCTGCAATTGGGGACACTTTACTTGCAAGTCCGCAGGTAAGAAAAATCACTTTCACAGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCTGGTGCAGCTGGGACTGTTAAGAAGGTATCTCTTGAACTTGGTGGCAATGCACCCTGCATAGTCTTTGATGATGCAGACCTGGATGTGGCAGTAAAAGGAACTCTTGGAGCAAAGTTCCGTAATACTGGACAGACATGTGTTTGTGCTAATAGGATTATGGTACAAGAAGGTATCTATGAGAAATTTGTGGATGCTTTTACGAAAGCTGTCCAGAAGCTCCAAGTTGGGCATGGCTTTAGTGAAGGAGTGGCCCAGGGTCCTTTAATCAATGAAGCAGCAGTACAAAAGGTTGAGTCATTTGTCAAAGATGCTACATCAAAGGGAGCAAAAGTTGTTCTTGGAGCCAAAAGGCATAGCCTTGGAATGACCTTTTATGAGCCTACAGTTCTCAGGGATGTCAAGAGTGATATGATTATAGCAAGAGATGAAGTATTTGGACCAGTCGCACCTGTTTTGCGTTTCAAAACTGAGGATGAAGCTCTCCGCATGGCCAATGATACCGATGCAGGGTTAGCTGCTTACATATTTACAAATAATGTACAACGATCATGGCGTGTTGCTGAAGCTCTTGAATATGGACTTGTTGGTGTCAATGAAGGGTTAATTTCAACAGAGGTGGCTCCTTTTGGAGGTGTCAAGCAGTCTGGTCTTGGACGAGAAGGTTCCAAGTATGGAATGGATGAATATTTGGAAGTTAAATACGTGTGCCTGGGAAATATGAGCAGCAAGTGA

Protein Analysis

525

Amino Acids

56.03

Weight (kDa)

8.27

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 60 - 517 5.6e-176 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015956)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50900
fragaria_vesca FvH4_3g22190
malus_domestica MD03G1207700.v1.1
prunus_persica Prupe.4G209000_v2.0.a1
pyrus_communis pycom03g15670 pycom11g19600
rosa_chinensis RchiOBHm_Chr5g0038151
rosa_laevigata RLG00000033835
rosa_multiflora Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa Rorug05G0171000
rosa_samantha Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana Rw5G024180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 6 cut(s) 5, 282, 610, 722, 788, 1330
AcoI YGGCCR 2 cut(s) 522, 1335
AcsI RAATTY 1 cut(s) 1028
AcuI CTGAAG 2 cut(s) 498, 1428
AfaI GTAC 5 cut(s) 356, 643, 1008, 1128, 1386
AfiI CCNNNNNNNGG 7 cut(s) 221, 250, 251, 531, 931, 1353, 1475
AflIII ACRYGT 3 cut(s) 490, 980, 1548
AgsI TTSAA 5 cut(s) 34, 881, 1309, 1418, 1455
AjnI CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1554
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AleI CACNNNNGTG 1 cut(s) 323
Alw26I GTCTC 2 cut(s) 46, 257
AlwNI CAGNNNCTG 3 cut(s) 221, 306, 695
AoxI GGCC 4 cut(s) 153, 522, 1095, 1335
ApeKI GCWGC 9 cut(s) 20, 284, 550, 689, 692, 851, 1121, 1361, 1569
ApoI RAATTY 1 cut(s) 1028
Asp700I GAANNNNTTC 1 cut(s) 754
AspS9I GGNCC 5 cut(s) 154, 620, 1096, 1103, 1283
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 4 cut(s) 236, 449, 454, 512
AvaII GGWCC 3 cut(s) 620, 1103, 1283
BalI TGGCCA 1 cut(s) 1337
BarI GAAGNNNNNNTAC 2 cut(s) 1110, 1142
BbvI GCAGC 8 cut(s) 32, 296, 562, 701, 704, 863, 1133, 1348
BccI CCATC 2 cut(s) 520, 835
BciT130I CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1556
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 2 cut(s) 46, 257
BfmI CTRYAG 2 cut(s) 555, 1227
BfuAI ACCTGC 1 cut(s) 781
BglI GCCNNNNNGGC 1 cut(s) 293
BlpI GCTNAGC 1 cut(s) 696
Bme1390I CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1556
Bme18I GGWCC 3 cut(s) 620, 1103, 1283
BmgT120I GGNCC 5 cut(s) 154, 620, 1096, 1103, 1283
BmiI GGNNCC 4 cut(s) 1104, 1189, 1467, 1510
BmrFI CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1556
BmsI GCATC 8 cut(s) 121, 169, 262, 525, 907, 1027, 1144, 1339
BpmI CTGGAG 2 cut(s) 328, 425
Bpu10I CCTNAGC 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 726
BsaAI YACGTR 2 cut(s) 146, 1549
BsaJI CCNNGG 7 cut(s) 291, 402, 581, 1098, 1099, 1204, 1555
BsaXI ACNNNNNCTCC 4 cut(s) 325, 355, 1161, 1191
Bsc4I CCNNNNNNNGG 7 cut(s) 221, 250, 251, 531, 931, 1353, 1475
Bse1I ACTGG 3 cut(s) 226, 976, 1286
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1556
BseDI CCNNGG 7 cut(s) 291, 402, 581, 1098, 1099, 1204, 1555
BseGI GGATG 6 cut(s) 540, 934, 1042, 1246, 1324, 1531
BseLI CCNNNNNNNGG 7 cut(s) 221, 250, 251, 531, 931, 1353, 1475
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 687, 1249, 1305
BseNI ACTGG 3 cut(s) 226, 976, 1286
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 8 cut(s) 32, 296, 562, 701, 704, 863, 1133, 1348
BseYI CCCAGC 2 cut(s) 214, 854
BsgI GTGCAG 1 cut(s) 870
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 4 cut(s) 155, 524, 1097, 1337
BsiEI CGRYCG 1 cut(s) 529
BsiSI CCGG 1 cut(s) 725
BslFI GGGAC 3 cut(s) 227, 782, 871
BslI CCNNNNNNNGG 7 cut(s) 221, 250, 251, 531, 931, 1353, 1475
BsmAI GTCTC 2 cut(s) 46, 257
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 227, 782, 871
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 4 cut(s) 155, 524, 1097, 1337
Bsp1407I TGTACA 2 cut(s) 641, 1384
Bsp143I GATC 3 cut(s) 358, 526, 1391
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 6 cut(s) 5, 282, 610, 722, 788, 1330
BspANI GGCC 4 cut(s) 155, 524, 1097, 1337
BspCNI CTCAG 3 cut(s) 688, 1248, 1306
BspLI GGNNCC 4 cut(s) 1104, 1189, 1467, 1510
BspMI ACCTGC 1 cut(s) 781
BsrDI GCAATG 1 cut(s) 898
BsrGI TGTACA 2 cut(s) 641, 1384
BsrI ACTGG 3 cut(s) 226, 976, 1286
BssECI CCNNGG 7 cut(s) 291, 402, 581, 1098, 1099, 1204, 1555
BssMI GATC 3 cut(s) 358, 526, 1391
BssT1I CCWWGG 1 cut(s) 1204
Bst2UI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1556
Bst4CI ACNGT 4 cut(s) 241, 646, 862, 1231
Bst6I CTCTTC 1 cut(s) 474
BstAUI TGTACA 2 cut(s) 641, 1384
BstBAI YACGTR 2 cut(s) 146, 1549
BstC8I GCNNGC 8 cut(s) 10, 14, 18, 63, 85, 457, 702, 711
BstDEI CTNAG 4 cut(s) 685, 696, 1235, 1314
BstEII GGTNACC 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 1473
BstF5I GGATG 6 cut(s) 540, 934, 1042, 1246, 1324, 1531
BstKTI GATC 3 cut(s) 361, 529, 1394
BstMAI GTCTC 2 cut(s) 46, 257
BstMBI GATC 3 cut(s) 358, 526, 1391
BstMCI CGRYCG 1 cut(s) 529
BstNI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1556
BstNSI RCATGY 3 cut(s) 16, 636, 984
BstPI GGTNACC 1 cut(s) 442
BstSCI CCNGG 7 cut(s) 305, 402, 581, 724, 924, 1098, 1554
BstSFI CTRYAG 2 cut(s) 555, 1227
BstSNI TACGTA 1 cut(s) 146
BstV1I GCAGC 8 cut(s) 32, 296, 562, 701, 704, 863, 1133, 1348
BsuRI GGCC 4 cut(s) 155, 524, 1097, 1337
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 6 cut(s) 540, 934, 1042, 1246, 1324, 1531
BtsIMutI CAGTG 1 cut(s) 651
BveI ACCTGC 1 cut(s) 781
Cac8I GCNNGC 8 cut(s) 10, 14, 18, 63, 85, 457, 702, 711
CaiI CAGNNNCTG 3 cut(s) 221, 306, 695
Cfr13I GGNCC 5 cut(s) 154, 620, 1096, 1103, 1283
CseI GACGC 1 cut(s) 110
Csp6I GTAC 5 cut(s) 355, 642, 1007, 1127, 1385
CspCI CAANNNNNGTGG 2 cut(s) 1443, 1478
CviQI GTAC 5 cut(s) 355, 642, 1007, 1127, 1385
DdeI CTNAG 4 cut(s) 685, 696, 1235, 1314
DpnI GATC 3 cut(s) 360, 528, 1393
DpnII GATC 3 cut(s) 358, 526, 1391
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 2 cut(s) 522, 1335
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco105I TACGTA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 1204
Eco47I GGWCC 3 cut(s) 620, 1103, 1283
Eco57I CTGAAG 2 cut(s) 498, 1428
Eco91I GGTNACC 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 1473
EcoO109I RGGNCCY 2 cut(s) 154, 1103
EcoO65I GGTNACC 1 cut(s) 442
EcoRII CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1554
EcoT14I CCWWGG 1 cut(s) 1204
EcoT22I ATGCAT 2 cut(s) 184, 251
ErhI CCWWGG 1 cut(s) 1204
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 6 cut(s) 369, 401, 933, 965, 1167, 1199
FaqI GGGAC 3 cut(s) 227, 782, 871
FauI CCCGC 1 cut(s) 617
FauNDI CATATG 1 cut(s) 184
FokI GGATG 6 cut(s) 547, 941, 1049, 1253, 1331, 1538
GsaI CCCAGC 2 cut(s) 218, 858
GsuI CTGGAG 2 cut(s) 328, 425
HaeIII GGCC 4 cut(s) 155, 524, 1097, 1337
HapII CCGG 1 cut(s) 725
HgaI GACGC 1 cut(s) 110
HinfI GANTC 2 cut(s) 70, 1139
HpaII CCGG 1 cut(s) 725
HphI GGTGA 4 cut(s) 236, 449, 454, 512
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 3 cut(s) 178, 292, 664
Hpy188III TCNNGA 4 cut(s) 878, 1057, 1246, 1415
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 534
HpyAV CCTTC 7 cut(s) 40, 63, 862, 1007, 1082, 1436, 1499
HpyCH4III ACNGT 4 cut(s) 241, 646, 862, 1231
HpyCH4IV ACGT 3 cut(s) 145, 490, 1548
HpyF3I CTNAG 4 cut(s) 685, 696, 1235, 1314
HpySE526I ACGT 3 cut(s) 145, 490, 1548
Kzo9I GATC 3 cut(s) 358, 526, 1391
LmnI GCTCC 9 cut(s) 309, 333, 406, 452, 953, 1068, 1169, 1187, 1471
Lsp1109I GCAGC 8 cut(s) 32, 296, 562, 701, 704, 863, 1133, 1348
LweI GCATC 8 cut(s) 121, 169, 262, 525, 907, 1027, 1144, 1339
MaeII ACGT 3 cut(s) 145, 490, 1548
MaeIII GTNAC 2 cut(s) 316, 442
MalI GATC 3 cut(s) 360, 528, 1393
MboI GATC 3 cut(s) 358, 526, 1391
MboII GAAGA 2 cut(s) 392, 491
MfeI CAATTG 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 1337
MluCI AATT 5 cut(s) 366, 507, 762, 1028, 1449
MluNI TGGCCA 1 cut(s) 1337
MlyI GAGTC 2 cut(s) 64, 1148
MmeI TCCRAC 1 cut(s) 808
Mox20I TGGCCA 1 cut(s) 1337
Mph1103I ATGCAT 2 cut(s) 184, 251
MroXI GAANNNNTTC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 1337
MseI TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1448, 1542
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 1337
MspA1I CMGCKG 2 cut(s) 695, 854
MspI CCGG 1 cut(s) 725
MspR9I CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1556
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 6 cut(s) 307, 404, 583, 926, 1100, 1556
NciI CCSGG 1 cut(s) 726
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 358, 526, 1391
NlaIV GGNNCC 4 cut(s) 1104, 1189, 1467, 1510
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 316, 442
NsiI ATGCAT 2 cut(s) 184, 251
NspI RCATGY 3 cut(s) 16, 636, 984
OliI CACNNNNGTG 1 cut(s) 323
PaeI GCATGC 1 cut(s) 16
PasI CCCWGGG 1 cut(s) 1099
PciI ACATGT 1 cut(s) 980
PcsI WCGNNNNNNNCGW 1 cut(s) 1396
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 305
Ple19I CGATCG 1 cut(s) 529
PleI GAGTC 2 cut(s) 64, 1147
PpsI GAGTC 2 cut(s) 64, 1147
Ppu21I YACGTR 2 cut(s) 146, 1549
PpuMI RGGWCCY 1 cut(s) 1103
PscI ACATGT 1 cut(s) 980
Psp5II RGGWCCY 1 cut(s) 1103
Psp6I CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1554
PspEI GGTNACC 1 cut(s) 442
PspFI CCCAGC 2 cut(s) 214, 854
PspGI CCWGG 6 cut(s) 305, 402, 581, 924, 1098, 1554
PspN4I GGNNCC 4 cut(s) 1104, 1189, 1467, 1510
PspPI GGNCC 5 cut(s) 154, 620, 1096, 1103, 1283
PspPPI RGGWCCY 1 cut(s) 1103
PstNI CAGNNNCTG 3 cut(s) 221, 306, 695
PvuI CGATCG 1 cut(s) 529
PvuII CAGCTG 2 cut(s) 695, 854
RsaI GTAC 5 cut(s) 356, 643, 1008, 1128, 1386
RsaNI GTAC 5 cut(s) 355, 642, 1007, 1127, 1385
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1448, 1542
Sau3AI GATC 3 cut(s) 358, 526, 1391
Sau96I GGNCC 5 cut(s) 154, 620, 1096, 1103, 1283
SchI GAGTC 2 cut(s) 64, 1148
ScrFI CCNGG 7 cut(s) 307, 404, 583, 726, 926, 1100, 1556
SfaNI GCATC 8 cut(s) 121, 169, 262, 525, 907, 1027, 1144, 1339
SfcI CTRYAG 2 cut(s) 555, 1227
SinI GGWCC 3 cut(s) 620, 1103, 1283
SmiMI CAYNNNNRTG 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 146
SphI GCATGC 1 cut(s) 16
Sse9I AATT 5 cut(s) 366, 507, 762, 1028, 1449
SsiI CCGC 6 cut(s) 5, 282, 610, 722, 788, 1330
SspI AATATT 1 cut(s) 1532
StyD4I CCNGG 7 cut(s) 305, 402, 581, 724, 924, 1098, 1554
StyI CCWWGG 1 cut(s) 1204
TaaI ACNGT 4 cut(s) 241, 646, 862, 1231
TaiI ACGT 3 cut(s) 148, 493, 1551
TaqI TCGA 3 cut(s) 25, 68, 529
TasI AATT 5 cut(s) 366, 507, 762, 1028, 1449
TatI WGTACW 3 cut(s) 641, 1126, 1384
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1448, 1542
Tru9I TTAA 7 cut(s) 344, 545, 654, 864, 1109, 1448, 1542
TscAI CASTG 1 cut(s) 651
TseFI GTSAC 2 cut(s) 316, 442
TseI GCWGC 9 cut(s) 20, 284, 550, 689, 692, 851, 1121, 1361, 1569
Tsp45I GTSAC 2 cut(s) 316, 442
TspDTI ATGAA 6 cut(s) 749, 1131, 1287, 1335, 1455, 1542
TspGWI ACGGA 2 cut(s) 547, 953
TspRI CASTG 1 cut(s) 651
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 3 cut(s) 620, 1103, 1283
XagI CCTNNNNNAGG 1 cut(s) 1473
XapI RAATTY 1 cut(s) 1028
XceI RCATGY 3 cut(s) 16, 636, 984
XcmI CCANNNNNNNNNTGG 2 cut(s) 1073, 1519
XmnI GAANNNNTTC 1 cut(s) 754
Zsp2I ATGCAT 2 cut(s) 184, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.