Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Reverse (-)

13032516 .. 13034869

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTTCAATTCCATGTACTGGTGTTGCTGCTGCTGCTGCTGCCATCACCTCCAAGTCCTTTCCTTCTTCAACCAAATTCAACACCCGGTTCGTGGGTACCCGAAATAGGCTCGGGTGGGTCAGGCCCTTGGGGCTTGGACCCTCCAACGGGTCCAGAGCGAAGTGCTGGTTTAAATTCGGGAAAAACGGTGTAGATGCTGAAGGTGCTGGTATTTATGGAAGCCAATCCCGTGATGATTTTGATAGAGATGATGTTGAACAGTATTTCAACTACATGGGTATGCTCGCTGTTGAAGGTACATATGATAAGATGAATGCTCTTTTAAGCCAAAACATCCACCCGGTAGACATTTTGTTGTTGATGGCTGCATCTGAAGGTGACAAGCCAAAAATTGAAGAACTTTTAAGAGCTGGTGCTAGTTACTCTATCAAAGATGTCGATGGCCGGACAGCTCTTGATAGGGCTGCAAGTGATGAAATCAAAGACTTCATTCTTGGTTTTTCAGTTCAGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.7

Weight (kDa)

6.58

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	77, 176
AcuI	CTGAAG	2 cut(s)	222, 396
AfaI	GTAC	3 cut(s)	19, 100, 301
AfiI	CCNNNNNNNGG	5 cut(s)	20, 94, 108, 149, 150
AgsI	TTSAA	7 cut(s)	9, 72, 82, 260, 271, 296, 398
AluBI	AGCT	2 cut(s)	413, 455
AluI	AGCT	2 cut(s)	413, 455
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	125, 445
ApeKI	GCWGC	7 cut(s)	29, 32, 35, 38, 41, 368, 467
ApoI	RAATTY	2 cut(s)	77, 176
Asp718I	GGTACC	1 cut(s)	98
AspS9I	GGNCC	3 cut(s)	126, 140, 153
AsuC2I	CCSGG	2 cut(s)	88, 344
AsuHPI	GGTGA	2 cut(s)	40, 392
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	140, 153
BanI	GGYRCC	1 cut(s)	98
BbvI	GCAGC	7 cut(s)	16, 19, 22, 25, 28, 355, 454
BccI	CCATC	3 cut(s)	53, 358, 437
BcnI	CCSGG	2 cut(s)	88, 344
BfaI	CTAG	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	133
BisI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 369, 468
BlsI	GCNGC	7 cut(s)	31, 34, 37, 40, 43, 370, 469
Bme1390I	CCNGG	2 cut(s)	88, 344
Bme18I	GGWCC	2 cut(s)	140, 153
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	126, 140, 153
BmiI	GGNNCC	3 cut(s)	100, 142, 154
BmrFI	CCNGG	2 cut(s)	88, 344
BmsI	GCATC	2 cut(s)	187, 380
BpuMI	CCSGG	2 cut(s)	88, 344
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 94, 108, 149, 150
Bse1I	ACTGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	5 cut(s)	20, 94, 108, 149, 150
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	7 cut(s)	16, 19, 22, 25, 28, 355, 454
BshFI	GGCC	2 cut(s)	127, 447
BshNI	GGYRCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	88, 344, 448
BslI	CCNNNNNNNGG	5 cut(s)	20, 94, 108, 149, 150
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	127, 447
BsoBI	CYCGRG	1 cut(s)	113
BspANI	GGCC	2 cut(s)	127, 447
BspLI	GGNNCC	3 cut(s)	100, 142, 154
BspT107I	GGYRCC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	191, 264
BstC8I	GCNNGC	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 38, 41, 133, 206
BstSCI	CCNGG	2 cut(s)	86, 342
BstV1I	GCAGC	7 cut(s)	16, 19, 22, 25, 28, 355, 454
BsuRI	GGCC	2 cut(s)	127, 447
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	126, 140, 153
Csp6I	GTAC	3 cut(s)	18, 99, 300
CviAII	CATG	3 cut(s)	15, 277, 519
CviQI	GTAC	3 cut(s)	18, 99, 300
DraI	TTTAAA	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	445
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	140, 153
Eco57I	CTGAAG	2 cut(s)	222, 396
Eco88I	CYCGRG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	18, 280, 522
FaiI	YATR	7 cut(s)	16, 219, 278, 284, 304, 306, 520
FatI	CATG	3 cut(s)	14, 276, 518
FauNDI	CATATG	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 369, 468
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 369, 468
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 369, 468
HaeIII	GGCC	2 cut(s)	127, 447
HapII	CCGG	3 cut(s)	88, 344, 448
Hin1II	CATG	3 cut(s)	18, 280, 522
HpaII	CCGG	3 cut(s)	88, 344, 448
HphI	GGTGA	2 cut(s)	40, 392
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	376, 513
Hpy188III	TCNNGA	3 cut(s)	156, 181, 458
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	4 cut(s)	75, 197, 290, 371
HpyCH4III	ACNGT	2 cut(s)	191, 264
HpyCH4V	TGCA	2 cut(s)	371, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 38, 41, 133, 206
Hsp92II	CATG	3 cut(s)	18, 280, 522
KpnI	GGTACC	1 cut(s)	102
LpnPI	CCDG	9 cut(s)	6, 101, 109, 154, 169, 195, 357, 399, 461
Lsp1109I	GCAGC	7 cut(s)	16, 19, 22, 25, 28, 355, 454
LweI	GCATC	2 cut(s)	187, 380
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	380, 422
MboII	GAAGA	2 cut(s)	60, 410
MluCI	AATT	4 cut(s)	9, 77, 176, 393
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	61, 154
MseI	TTAA	3 cut(s)	174, 326, 407
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	3 cut(s)	88, 344, 448
MspR9I	CCNGG	2 cut(s)	88, 344
Mva1269I	GAATGC	1 cut(s)	322
MwoI	GCNNNNNNNGC	5 cut(s)	35, 38, 41, 133, 206
NciI	CCSGG	2 cut(s)	88, 344
NdeI	CATATG	1 cut(s)	304
NlaIII	CATG	3 cut(s)	18, 280, 522
NlaIV	GGNNCC	3 cut(s)	100, 142, 154
NmuCI	GTSAC	1 cut(s)	380
PctI	GAATGC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	31, 34, 37, 40, 43, 370, 469
PspN4I	GGNNCC	3 cut(s)	100, 142, 154
PspPI	GGNCC	3 cut(s)	126, 140, 153
RsaI	GTAC	3 cut(s)	19, 100, 301
RsaNI	GTAC	3 cut(s)	18, 99, 300
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	174, 326, 407
SatI	GCNGC	7 cut(s)	30, 33, 36, 39, 42, 369, 468
Sau96I	GGNCC	3 cut(s)	126, 140, 153
ScrFI	CCNGG	2 cut(s)	88, 344
SetI	ASST	6 cut(s)	53, 208, 301, 382, 415, 457
SfaNI	GCATC	2 cut(s)	187, 380
SinI	GGWCC	2 cut(s)	140, 153
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	9, 77, 176, 393
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	86, 342
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	191, 264
TaqI	TCGA	1 cut(s)	441
TasI	AATT	4 cut(s)	9, 77, 176, 393
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	174, 326, 407
Tru9I	TTAA	3 cut(s)	174, 326, 407
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	7 cut(s)	29, 32, 35, 38, 41, 368, 467
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	3 cut(s)	329, 481, 492
Van91I	CCANNNNNTGG	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	140, 153
XapI	RAATTY	2 cut(s)	77, 176
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.