Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360857.1

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 383

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360857.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

tatttcaactacatgggaatgcttgctgttgagggtacgtatgataagatgaatgctcttttaagccaaaatatccacccagtagatattctattgttgatggctgcctcagaagctgacaagccgaaaattgaagaacttttaagagccggagctagttactctgttaaagatgctgatgggcgaacagctcttgatagggctgcaagtgatgaaattaaagacttcattcttggtttttcagttcaaaaagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

4.75

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	37
AgsI	TTSAA	3 cut(s)	7, 134, 248
AluBI	AGCT	3 cut(s)	116, 155, 191
AluI	AGCT	3 cut(s)	116, 155, 191
AlwNI	CAGNNNCTG	1 cut(s)	116
ApeKI	GCWGC	2 cut(s)	104, 203
BbvI	GCAGC	2 cut(s)	91, 190
BccI	CCATC	2 cut(s)	94, 173
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	105, 204
BlsI	GCNGC	2 cut(s)	106, 205
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	91, 190
BsiSI	CCGG	1 cut(s)	150
BsmI	GAATGC	2 cut(s)	24, 58
BspCNI	CTCAG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSNI	TACGTA	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	91, 190
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	13, 255
CviJI	RGCY	8 cut(s)	66, 104, 116, 124, 149, 155, 191, 203
CviKI_1	RGCY	8 cut(s)	66, 104, 116, 124, 149, 155, 191, 203
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	39
FaeI	CATG	2 cut(s)	16, 258
FaiI	YATR	3 cut(s)	14, 42, 256
FatI	CATG	2 cut(s)	12, 254
Fnu4HI	GCNGC	2 cut(s)	105, 204
Fsp4HI	GCNGC	2 cut(s)	105, 204
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	105, 204
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	2 cut(s)	16, 258
HpaII	CCGG	1 cut(s)	150
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	16, 258
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	2 cut(s)	93, 163
Lsp1109I	GCAGC	2 cut(s)	91, 190
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	158
MboII	GAAGA	1 cut(s)	146
MluCI	AATT	2 cut(s)	129, 216
MnlI	CCTC	2 cut(s)	25, 118
MseI	TTAA	4 cut(s)	62, 143, 168, 219
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	150
Mva1269I	GAATGC	2 cut(s)	24, 58
MwoI	GCNNNNNNNGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	16, 258
PctI	GAATGC	2 cut(s)	24, 58
PkrI	GCNGC	2 cut(s)	106, 205
Ppu21I	YACGTR	1 cut(s)	39
PstNI	CAGNNNCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	62, 143, 168, 219
SatI	GCNGC	2 cut(s)	105, 204
SetI	ASST	4 cut(s)	41, 118, 157, 193
SfaNI	GCATC	1 cut(s)	163
SgeI	CNNG	9 cut(s)	25, 35, 92, 133, 162, 168, 206, 219, 245
SmiMI	CAYNNNNRTG	1 cut(s)	17
SnaBI	TACGTA	1 cut(s)	39
Sse9I	AATT	2 cut(s)	129, 216
SspMI	CTAG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	41
TasI	AATT	2 cut(s)	129, 216
Tru1I	TTAA	4 cut(s)	62, 143, 168, 219
Tru9I	TTAA	4 cut(s)	62, 143, 168, 219
TseI	GCWGC	2 cut(s)	104, 203
TspDTI	ATGAA	3 cut(s)	65, 217, 228
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.