Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010109

Physical Location & Seq

Genomic Coordinates Forward (+)

19057472 .. 19059766

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51405.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGAGAGACGTAACGAAGCGTTGATGATTAGGAAATCGAAGTGGCAGTACCCACAAGTGGGTTCTCCGACGCCGAGGATTCTTCAGTTGCCACGGAGGCATAGTGTTCGACGAAATGCTTCAAAGGGCTTGAAGACAACAGTTTCTTCGTCGTCTCAGAAGGATCGGAGAGTGAAACTGGAGGTTTTGTTTCATCAAGAGAGGACTTTTGATCGGGGGGCATCGATTGTGATGGTGAATGATAATGGTGGTGAGAAGAAGGATGAAGAAGAGGGAAGGAGAAGAGGGAAAGTTGCAGATGGGAGAGAGATTGGTGTGTCTGGGTTGTCTTCTTCTTCTGCGGTTGATGAAGTTGAGGAAGCTAAGTGGAGGTTTCAAGCGGAGATGTTGAGATCAGAGTGTAATTTGTTAAGAATAGAAAAAGAGATTGCTTTGAAGAAGATGGAGAGGAGGAAGAAGCGAATGGAGCGGACGCTGAGATCTGCTGTTCTTACTCTTCTATCTGGGAAAGAGAGAATCTCTGAAGGGACGAAAGAGAGCAAGGTTTTGGAAGATGAGATAAGCTATTTGGTTGAGAAACTGAATGAGTTAAAGTCTCCAAAGGTTAAGGACATGGAAGCTAGAAACTTCAAACATAATTTTGATAAGCAAGCTTCTGTTTTAAGAAGAGAGCTAGAGAGGTTCGATGAAGCAGTTTCCGAAGAGGTTTGTGTCAAAGGGATTCAGAAAATGGCAGAGGCTAGCTTCTCCGTCCATTCTGATCAAAACGCTCTTAGGAACAATAATGGAAATATAGATACATTGAGTAGTAAAATGGAGGCGTTGTCAAAAGGGGTTTTGTTGGAAAGAATGGAGAAAGAATATGGATCGAGTCTCGTTGCACCGTCTTCAAGCTCTGTACAAGACATGTATTGTAAGGGAATTAAAGCGCATGAGGAAAAGAAAGACTGTTCTAGACACTGCAAAGTAGTTATGAGGAAGATTGCGGATGAAGTAAGAGCTGAAGCAGAGCAATGGTCACAAATGCAAGAGATGTTGAATCAAGTGAGAAAAGAAATGGAGGAACTTCAATCTTGTCGTGATTTCTGGCAAAACCGCGCCCTCGAAGCAGATTCCGAGATACAAAATCTACATTCCTCTGTTGAAGGATGGCGAAGAAAGGCGTTATCATCAGAGGCAAAGTTGAAAAACCTACAAGCAGAGGTTTGCGGATTACAAGAAGAGATCAAGAGACTGAGAAAGGAAGATAAGTTAGAACCAGAGAAGAACAAATTGCCATCAGAGTCAGAGAAAAGGGTATTGATTTGTCGGTTAAAAGAAAACCGACATAGCAACAATGGAGATTGGTCCAAGTACAGTGAAGGAAGAACAACAAAACCGTCGAGCTCGAGACCGCCTTTGAGGGAAGTTAAGAACAGTTCAGTCATAGCAAGGCAGAGAAACTCCAATATCATGAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

56.21

Weight (kDa)

9.48

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51405 AT1G51405
fragaria_vesca	FvH4_3g28690 FvH4_3g28690 FvH4_3g28690 FvH4_3g28690
malus_domestica	MD03G1173500.v1.1 MD11G1191400.v1.1
prunus_persica	Prupe.4G251400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052391
rosa_laevigata	RLG00000034820
rosa_multiflora	Rmu_sc0004707.1_g000005 Rmu_sc0007454.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028270
rosa_rugosa	Rorug05G0272300 Rorug05G0272400
rosa_samantha	Rh5AG345000 Rh5BG356000 Rh5CG381400 Rh5DG371000
rosa_wichuraiana	Rw5G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	469
AccII	CGCG	1 cut(s)	1098
AciI	CCGC	7 cut(s)	341, 380, 469, 986, 1096, 1209, 1394
AclWI	GGATC	2 cut(s)	171, 874
AcuI	CTGAAG	3 cut(s)	68, 543, 1023
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	3 cut(s)	50, 900, 1355
AfiI	CCNNNNNNNGG	2 cut(s)	58, 59
AflIII	ACRYGT	1 cut(s)	906
AluBI	AGCT	9 cut(s)	362, 564, 620, 653, 673, 744, 894, 1001, 1386
AluI	AGCT	9 cut(s)	362, 564, 620, 653, 673, 744, 894, 1001, 1386
Alw21I	GWGCWC	1 cut(s)	1388
Alw26I	GTCTC	5 cut(s)	159, 600, 878, 1225, 1384
AlwI	GGATC	2 cut(s)	171, 874
Ama87I	CYCGRG	1 cut(s)	1387
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	2 cut(s)	931, 1100
AspS9I	GGNCC	1 cut(s)	1347
AsuHPI	GGTGA	2 cut(s)	247, 263
AsuNHI	GCTAGC	1 cut(s)	740
AvaI	CYCGRG	1 cut(s)	1387
AvaII	GGWCC	1 cut(s)	1347
BanII	GRGCYC	1 cut(s)	1388
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbsI	GAAGAC	3 cut(s)	140, 321, 879
Bbv12I	GWGCWC	1 cut(s)	1388
BccI	CCATC	5 cut(s)	226, 293, 436, 1143, 1285
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	5 cut(s)	159, 600, 878, 1225, 1384
BfaI	CTAG	4 cut(s)	621, 674, 741, 954
BglI	GCCNNNNNGGC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	1347
BmeT110I	CYCGRG	1 cut(s)	1387
BmgT120I	GGNCC	1 cut(s)	1347
BmsI	GCATC	1 cut(s)	230
BmtI	GCTAGC	1 cut(s)	744
BpiI	GAAGAC	3 cut(s)	140, 321, 879
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	1384
BsaJI	CCNNGG	2 cut(s)	74, 92
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 173, 203, 809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 59
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	1019
BseCI	ATCGAT	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	74, 92
BseGI	GGATG	3 cut(s)	268, 994, 1154
BseLI	CCNNNNNNNGG	2 cut(s)	58, 59
BseMI	GCAATG	1 cut(s)	1019
BseMII	CTCAG	3 cut(s)	170, 467, 1226
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	1098
BshVI	ATCGAT	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	1388
BsiHKCI	CYCGRG	1 cut(s)	1387
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	58, 59
BsmAI	GTCTC	5 cut(s)	159, 600, 878, 1225, 1384
BsmBI	CGTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	1384
BsoBI	CYCGRG	1 cut(s)	1387
Bsp1286I	GDGCHC	1 cut(s)	1388
Bsp1407I	TGTACA	1 cut(s)	898
Bsp143I	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
BspACI	CCGC	7 cut(s)	341, 380, 469, 986, 1096, 1209, 1394
BspCNI	CTCAG	3 cut(s)	169, 468, 1227
BspDI	ATCGAT	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	1098
BspHI	TCATGA	1 cut(s)	1452
BspOI	GCTAGC	1 cut(s)	744
BspPI	GGATC	2 cut(s)	171, 874
BspTNI	GGTCTC	1 cut(s)	1384
BsrBI	CCGCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	1019
BsrGI	TGTACA	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	74, 92
BssMI	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	6 cut(s)	142, 885, 950, 1358, 1380, 1418
Bst6I	CTCTTC	6 cut(s)	264, 277, 501, 661, 696, 1215
BstACI	GRCGYC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	898
BstC8I	GCNNGC	2 cut(s)	651, 742
BstDEI	CTNAG	5 cut(s)	156, 363, 476, 773, 1235
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	268, 994, 1154
BstFNI	CGCG	1 cut(s)	1098
BstHHI	GCGC	2 cut(s)	931, 1100
BstKTI	GATC	7 cut(s)	166, 214, 395, 482, 763, 869, 1227
BstMAI	GTCTC	5 cut(s)	159, 600, 878, 1225, 1384
BstMBI	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 466, 1106
BstNSI	RCATGY	1 cut(s)	910
BstUI	CGCG	1 cut(s)	1098
BstV2I	GAAGAC	3 cut(s)	140, 321, 879
BstX2I	RGATCY	1 cut(s)	479
BstYI	RGATCY	1 cut(s)	479
Bsu15I	ATCGAT	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	268, 994, 1154
BtsI	GCAGTG	1 cut(s)	958
BtsIMutI	CAGTG	2 cut(s)	958, 1363
Cac8I	GCNNGC	2 cut(s)	651, 742
CciI	TCATGA	1 cut(s)	1452
CfoI	GCGC	2 cut(s)	931, 1100
Cfr13I	GGNCC	1 cut(s)	1347
ClaI	ATCGAT	1 cut(s)	224
CseI	GACGC	2 cut(s)	79, 481
Csp6I	GTAC	3 cut(s)	49, 899, 1354
CviAII	CATG	4 cut(s)	613, 907, 932, 1453
CviQI	GTAC	3 cut(s)	49, 899, 1354
DdeI	CTNAG	5 cut(s)	156, 363, 476, 773, 1235
DpnI	GATC	7 cut(s)	165, 213, 394, 481, 762, 868, 1226
DpnII	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
Eam1104I	CTCTTC	6 cut(s)	264, 277, 501, 661, 696, 1215
EarI	CTCTTC	6 cut(s)	264, 277, 501, 661, 696, 1215
Ecl136II	GAGCTC	1 cut(s)	1386
Eco24I	GRGCYC	1 cut(s)	1388
Eco31I	GGTCTC	1 cut(s)	1384
Eco47I	GGWCC	1 cut(s)	1347
Eco53kI	GAGCTC	1 cut(s)	1386
Eco57I	CTGAAG	3 cut(s)	68, 543, 1023
Eco88I	CYCGRG	1 cut(s)	1387
EcoICRI	GAGCTC	1 cut(s)	1386
EcoT38I	GRGCYC	1 cut(s)	1388
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	4 cut(s)	616, 910, 935, 1456
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	4 cut(s)	612, 906, 931, 1452
FbaI	TGATCA	1 cut(s)	760
FokI	GGATG	3 cut(s)	275, 1001, 1161
FriOI	GRGCYC	1 cut(s)	1388
FspBI	CTAG	4 cut(s)	621, 674, 741, 954
GlaI	GCGC	2 cut(s)	930, 1099
GsuI	CTGGAG	1 cut(s)	200
HgaI	GACGC	2 cut(s)	79, 481
HhaI	GCGC	2 cut(s)	931, 1100
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	616, 910, 935, 1456
Hin6I	GCGC	2 cut(s)	929, 1098
HinP1I	GCGC	2 cut(s)	929, 1098
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	7 cut(s)	79, 516, 721, 871, 1039, 1112, 1283
HphI	GGTGA	2 cut(s)	247, 263
Hpy188III	TCNNGA	6 cut(s)	197, 954, 1079, 1228, 1389, 1453
Hpy99I	CGWCG	4 cut(s)	73, 114, 154, 1384
HpyAV	CCTTC	6 cut(s)	154, 253, 270, 518, 1139, 1355
HpyCH4III	ACNGT	6 cut(s)	142, 885, 950, 1358, 1380, 1418
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	4 cut(s)	296, 881, 963, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 466, 1106
HpyF3I	CTNAG	5 cut(s)	156, 363, 476, 773, 1235
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	616, 910, 935, 1456
HspAI	GCGC	2 cut(s)	929, 1098
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	5 cut(s)	164, 306, 489, 1072, 1272
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	4 cut(s)	621, 674, 741, 954
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	11, 1017
MalI	GATC	7 cut(s)	165, 213, 394, 481, 762, 868, 1226
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	1388
MluCI	AATT	4 cut(s)	403, 637, 921, 1271
MlyI	GAGTC	2 cut(s)	880, 1292
MmeI	TCCRAC	2 cut(s)	92, 822
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	7 cut(s)	410, 590, 606, 662, 924, 1313, 1410
MslI	CAYNNNNRTG	1 cut(s)	1457
MvnI	CGCG	1 cut(s)	1098
MwoI	GCNNNNNNNGC	3 cut(s)	97, 466, 1106
NdeII	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
NheI	GCTAGC	1 cut(s)	740
NlaIII	CATG	4 cut(s)	616, 910, 935, 1456
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	1017
NspI	RCATGY	1 cut(s)	910
PaeR7I	CTCGAG	1 cut(s)	1387
PagI	TCATGA	1 cut(s)	1452
PciI	ACATGT	1 cut(s)	906
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	79, 516, 721, 1039, 1112
PleI	GAGTC	2 cut(s)	879, 1291
PpsI	GAGTC	2 cut(s)	879, 1291
PscI	ACATGT	1 cut(s)	906
Psp124BI	GAGCTC	1 cut(s)	1388
PspPI	GGNCC	1 cut(s)	1347
PsuI	RGATCY	1 cut(s)	479
RsaI	GTAC	3 cut(s)	50, 900, 1355
RsaNI	GTAC	3 cut(s)	49, 899, 1354
RseI	CAYNNNNRTG	1 cut(s)	1457
SacI	GAGCTC	1 cut(s)	1388
SaqAI	TTAA	7 cut(s)	410, 590, 606, 662, 924, 1313, 1410
Sau3AI	GATC	7 cut(s)	163, 211, 392, 479, 760, 866, 1224
Sau96I	GGNCC	1 cut(s)	1347
SchI	GAGTC	2 cut(s)	880, 1292
SduI	GDGCHC	1 cut(s)	1388
SfaNI	GCATC	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	1387
SinI	GGWCC	1 cut(s)	1347
SlaI	CTCGAG	1 cut(s)	1387
SmiMI	CAYNNNNRTG	1 cut(s)	1457
SmlI	CTYRAG	1 cut(s)	1387
SmoI	CTYRAG	1 cut(s)	1387
Sse9I	AATT	4 cut(s)	403, 637, 921, 1271
SsiI	CCGC	7 cut(s)	341, 380, 469, 986, 1096, 1209, 1394
SspMI	CTAG	4 cut(s)	621, 674, 741, 954
SstI	GAGCTC	1 cut(s)	1388
TaaI	ACNGT	6 cut(s)	142, 885, 950, 1358, 1380, 1418
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	8 cut(s)	38, 109, 224, 684, 869, 1104, 1382, 1388
TasI	AATT	4 cut(s)	403, 637, 921, 1271
TatI	WGTACW	2 cut(s)	898, 1353
TfiI	GAWTC	5 cut(s)	79, 516, 721, 1039, 1112
Tru1I	TTAA	7 cut(s)	410, 590, 606, 662, 924, 1313, 1410
Tru9I	TTAA	7 cut(s)	410, 590, 606, 662, 924, 1313, 1410
TscAI	CASTG	2 cut(s)	965, 1363
TseFI	GTSAC	1 cut(s)	1017
Tsp45I	GTSAC	1 cut(s)	1017
TspDTI	ATGAA	5 cut(s)	182, 279, 363, 702, 1005
TspGWI	ACGGA	2 cut(s)	109, 739
TspRI	CASTG	2 cut(s)	965, 1363
VpaK11BI	GGWCC	1 cut(s)	1347
XbaI	TCTAGA	1 cut(s)	953
XceI	RCATGY	1 cut(s)	910
XhoI	CTCGAG	1 cut(s)	1387
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	4 cut(s)	621, 674, 741, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.