Rorug05G0272300

dihydrokaempferol 4-reductase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
30708186 .. 30708969
784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0272300.1

Sequence Viewer

Length: 375 bp
ATGCCTTCGCCGCGATCTGCAACAAGTACGACCGATACGGCATCGACAAGTAGAAGGACTCTAATGTCTCCGGCGACGATGCCTTCGCTCGCCTCTACTCTGCCGTCGAGTTCGACATTGAAGCTGCTCTTCAGGTTCAGTATCTTTCTCTGTTTCTTTCTGATTCAAATTAAAGCGGAGCTTGCTTCAAAAAAGAAAAGTAGGGCATTTGCAGTTGCTTTGAATGCCGTGATTCGCCGGACCAAGGCTCGATTGCTTAAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTTAAAGGGCTTTCATCTGAAGAGTTTGCTGCTCGTAATGAGTTGGTTGTAAGGCTTGTTTACAGAAAAAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

11.59

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AccII CGCG 1 cut(s) 13
AciI CCGC 2 cut(s) 11, 176
AcuI CTGAAG 2 cut(s) 115, 336
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 4 cut(s) 121, 167, 189, 223
AluBI AGCT 2 cut(s) 124, 181
AluI AGCT 2 cut(s) 124, 181
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 124, 326
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AspS9I GGNCC 1 cut(s) 240
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 111, 313
BceAI ACGGC 3 cut(s) 54, 88, 212
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 3 cut(s) 11, 125, 327
BlsI GCNGC 3 cut(s) 12, 126, 328
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 267
BmsI GCATC 2 cut(s) 50, 69
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 111, 313
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 71, 238
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 2 cut(s) 11, 176
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 243
Bst6I CTCTTC 2 cut(s) 134, 312
BstC8I GCNNGC 2 cut(s) 90, 183
BstFNI CGCG 1 cut(s) 13
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 10, 182, 224
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 2 cut(s) 111, 313
Cac8I GCNNGC 2 cut(s) 90, 183
Cfr13I GGNCC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 6 cut(s) 124, 181, 248, 287, 307, 352
CviKI_1 RGCY 6 cut(s) 124, 181, 248, 287, 307, 352
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 134, 312
EarI CTCTTC 2 cut(s) 134, 312
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 115, 336
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaiI YATR 1 cut(s) 373
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 165, 197
Fnu4HI GCNGC 3 cut(s) 11, 125, 327
Fsp4HI GCNGC 3 cut(s) 11, 125, 327
GluI GCNGC 3 cut(s) 11, 125, 327
HapII CCGG 2 cut(s) 71, 238
HinfI GANTC 3 cut(s) 58, 163, 232
HpaII CCGG 2 cut(s) 71, 238
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 162, 316
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 79, 109
HpyAV CCTTC 4 cut(s) 15, 48, 93, 289
HpyCH4V TGCA 3 cut(s) 20, 212, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 182, 224
Kzo9I GATC 1 cut(s) 14
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 84, 118, 251
Lsp1109I GCAGC 2 cut(s) 111, 313
LweI GCATC 2 cut(s) 50, 69
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 121, 329
MluCI AATT 1 cut(s) 168
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 2 cut(s) 103, 256
MseI TTAA 3 cut(s) 171, 258, 300
MspI CCGG 2 cut(s) 71, 238
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 182, 224
NdeII GATC 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 134
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 163, 232
PkrI GCNGC 3 cut(s) 12, 126, 328
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 240
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 171, 258, 300
SatI GCNGC 3 cut(s) 11, 125, 327
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 52
SetI ASST 5 cut(s) 126, 137, 183, 267, 300
SfaNI GCATC 2 cut(s) 50, 69
SinI GGWCC 1 cut(s) 240
Sse9I AATT 1 cut(s) 168
SsiI CCGC 2 cut(s) 11, 176
StyI CCWWGG 1 cut(s) 243
TaqI TCGA 4 cut(s) 44, 107, 113, 250
TaqII GACCGA 1 cut(s) 47
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 163, 232
Tru1I TTAA 3 cut(s) 171, 258, 300
Tru9I TTAA 3 cut(s) 171, 258, 300
TseI GCWGC 2 cut(s) 124, 326
TspDTI ATGAA 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.