Rh5BG356000

dihydrokaempferol 4-reductase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
55259289 .. 55262870
3582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG356000.1

Sequence Viewer

Length: 1557 bp
ATGTCTCTCACAACGACAGTAACAGCAACAAGGAGGCCAAAACGGCAGTACCCACCAGCCCCACCGGTCCCAAAGATCCTACATTTGCCACGTAGGCCTCGCCGGAGAACACCCAAGAGCAGCATCGCCGCCGTTCATGGAAAACCAGCCGCGCCCACTTCGGTGGAGGACAAGAAGGGCAAGCTGGTGGCTCTGTTTGACCAAGAACGAGTTTTTTCAAAAGCTGGTTTTCCAATAGTGCTTTTGGAGAGTGAGGGGAGGAGGGAGAGGGTTAGTGAGGGGGAGGAGGAAGATGGTGGTGCTGACGTGGAGGTGGTGGAAGAGGAGAAGTGGAGGTTTCAGGCGGAGATGTTGAGGGCAGAGTGCAATTTGCTGAGGATGGAGAAGGAGATTGTGGTTAAGAAGATGGAGAGGATCAAAGTTAAAATGGAAAGGACTCTTAAATCAGCTGTGCACACTCTTGTTTCTGGGAGAAAGAAGATTAGTGAAGGAAGGAATGTAACTATGGTATTGGAGGAAGAGATTCAGCAATTGGTTCAGAAACTAGAGAAGTTGCAAAGGAATCTAGGAGCTAAGGGCGTGGAGGTTCGGAAGTCCAGCAACTTCGACAAACAAGCTTATCTTCTTCAAAGGCGGTTAGAGAAGTTTAGAGGAACATCGGATGAGATATGCGTTAAGGAGATCCAGGAGATGGCAGAAGCAAGCTTATCAATCAAAACAAGCTATAGAGGAACTGAGAACTTGGTTTCAAGTGGCAAAAGCAATGTGGAGATTCTGAGAAGGAGAATGGAGGGGTTGTCAAATGGGATGCTATTAAAGAGGATGAAGGAGGAATATGGTTCAATGCTGTCTACAGCCAACAACTCTGTTGCCAGTTCTGCCTCCTCGTCCAAGAGAATCGAATCCACTGATTTGTTGTCTTCCTTGGAGAAAGAAACTCATGATGAGAACGTATGCTCAGGACGTTGCAAGGCCATTGTTCGAAGGATTGTAGAGCAAGTACGAGCTGAGACAGAGCAATGGTCTCAGATGCAGGAAATGCTTGGGCAGGTGAGGGAGGAGATGGAGGAATTGCATGCCTCTCGAGACTTTTGGGAAGATCGAGCCCTAGACTCTGATTATCATATCCAATCCTTGAGCTCCTCTGTGCAAGAATGGAGGCAGAAAGCTGTTTCATCTGAAAGCAAAGCAAGGGGCTTGCAAGAACAAGTGTCATCACTCCATGCGGAGCTAAATAGCTTGAGGAAATGTGAAAACACAAAAGTAAAGAAGGAGAATTGCTCACCTAATCCCTGGGATCTGCAGACCGAAATGGAAAAACGGGTTTTGATTTGTCACTTGAAGGAAAACCATTGTACCAAAGAATACAGCAGCAAGCAAAGGGAGGTTTTACTTGAAAGTAGGAAAAAACCAGACTCATGCACCAACAGAACACCTATTGCTCCCCATGCTCTGAAAAGATCACCATTTCGAGATATTGGAAATTCCTCATTGTCGTTGAGGCAACACAGCAAAGCAGTCTTCCCTTTACATTGTCCTCTACCTTCCAAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

518

Amino Acids

59.13

Weight (kDa)

9.37

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1039
Acc36I ACCTGC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 691
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 152
AciI CCGC 5 cut(s) 129, 150, 344, 634, 1226
AclWI GGATC 4 cut(s) 70, 422, 676, 1305
AcsI RAATTY 1 cut(s) 1483
AfaI GTAC 3 cut(s) 50, 1002, 1357
AfiI CCNNNNNNNGG 1 cut(s) 691
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 6 cut(s) 219, 629, 750, 843, 1342, 1397
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 2 cut(s) 684, 1292
AleI CACNNNNGTG 1 cut(s) 161
Alw21I GWGCWC 2 cut(s) 456, 1142
Alw26I GTCTC 4 cut(s) 9, 1004, 1029, 1080
Alw44I GTGCAC 1 cut(s) 452
AlwI GGATC 4 cut(s) 70, 422, 676, 1305
Ama87I CYCGRG 1 cut(s) 1083
AoxI GGCC 3 cut(s) 35, 95, 972
ApaLI GTGCAC 1 cut(s) 452
ApeKI GCWGC 2 cut(s) 120, 1371
ApoI RAATTY 1 cut(s) 1483
AsiGI ACCGGT 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 1063, 1275, 1455
AsuII TTCGAA 1 cut(s) 982
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 456
BaeI ACNNNNGTAYC 4 cut(s) 32, 65, 1339, 1372
BanII GRGCYC 2 cut(s) 1108, 1142
BbsI GAAGAC 2 cut(s) 912, 1513
Bbv12I GWGCWC 2 cut(s) 456, 1142
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 132, 1383
BccI CCATC 5 cut(s) 287, 373, 400, 685, 1057
BceAI ACGGC 2 cut(s) 59, 116
BcgI CGANNNNNNTGC 2 cut(s) 1064, 1098
BciT130I CCWGG 2 cut(s) 686, 1294
BcoDI GTCTC 4 cut(s) 9, 1004, 1029, 1080
BfaI CTAG 3 cut(s) 545, 566, 1109
BfmI CTRYAG 3 cut(s) 724, 852, 1301
BfuAI ACCTGC 1 cut(s) 1039
BglI GCCNNNNNGGC 2 cut(s) 43, 94
BisI GCNGC 4 cut(s) 121, 129, 150, 1372
BlsI GCNGC 4 cut(s) 122, 130, 151, 1373
Bme1390I CCNGG 2 cut(s) 686, 1294
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 1083
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 686, 1294
BmsI GCATC 3 cut(s) 132, 798, 1020
BpiI GAAGAC 2 cut(s) 912, 1513
BplI GAGNNNNNCTC 2 cut(s) 1265, 1297
Bpu10I CCTNAGC 3 cut(s) 374, 573, 958
Bpu14I TTCGAA 1 cut(s) 982
BpuEI CTTGAG 2 cut(s) 1156, 1261
BsaAI YACGTR 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 1029
BsaJI CCNNGG 3 cut(s) 924, 1292, 1293
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 873
Bse3DI GCAATG 2 cut(s) 769, 1025
BseBI CCWGG 2 cut(s) 686, 1294
BseDI CCNNGG 3 cut(s) 924, 1292, 1293
BseGI GGATG 4 cut(s) 384, 667, 813, 828
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 2 cut(s) 769, 1025
BseMII CTCAG 6 cut(s) 365, 726, 767, 972, 999, 1040
BseNI ACTGG 1 cut(s) 873
BseRI GAGGAG 6 cut(s) 274, 299, 338, 874, 1073, 1132
BseSI GKGCMC 1 cut(s) 456
BseXI GCAGC 2 cut(s) 132, 1383
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 3 cut(s) 37, 97, 974
BshTI ACCGGT 1 cut(s) 64
BsiHKAI GWGCWC 2 cut(s) 456, 1142
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 65, 103
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 4 cut(s) 9, 1004, 1029, 1080
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 3 cut(s) 37, 97, 974
Bso31I GGTCTC 1 cut(s) 1029
BsoBI CYCGRG 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 982
Bsp1286I GDGCHC 3 cut(s) 456, 1108, 1142
Bsp143I GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
BspACI CCGC 5 cut(s) 129, 150, 344, 634, 1226
BspANI GGCC 3 cut(s) 37, 97, 974
BspCNI CTCAG 6 cut(s) 366, 727, 768, 971, 1000, 1039
BspFNI CGCG 1 cut(s) 152
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 1305
BspMI ACCTGC 1 cut(s) 1039
BspPI GGATC 4 cut(s) 70, 422, 676, 1305
BspT104I TTCGAA 1 cut(s) 982
BspTNI GGTCTC 1 cut(s) 1029
BsrDI GCAATG 2 cut(s) 769, 1025
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 873
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 3 cut(s) 924, 1292, 1293
BssMI GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
BssT1I CCWWGG 1 cut(s) 924
Bst2UI CCWGG 2 cut(s) 686, 1294
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 315, 513
BstAPI GCANNNNNTGC 1 cut(s) 1039
BstBAI YACGTR 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 982
BstC8I GCNNGC 5 cut(s) 182, 703, 1077, 1199, 1376
BstDEI CTNAG 7 cut(s) 374, 573, 735, 776, 958, 1008, 1026
BstF5I GGATG 4 cut(s) 384, 667, 813, 828
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 6 cut(s) 78, 417, 684, 1102, 1300, 1463
BstMAI GTCTC 4 cut(s) 9, 1004, 1029, 1080
BstMBI GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
BstMWI GCNNNNNNNGC 5 cut(s) 43, 94, 878, 1039, 1448
BstNI CCWGG 2 cut(s) 686, 1294
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 2 cut(s) 684, 1292
BstSFI CTRYAG 3 cut(s) 724, 852, 1301
BstSLI GKGCMC 1 cut(s) 456
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 132, 1383
BstV2I GAAGAC 2 cut(s) 912, 1513
BstX2I RGATCY 3 cut(s) 75, 681, 1297
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 3 cut(s) 75, 681, 1297
BsuRI GGCC 3 cut(s) 37, 97, 974
BtgZI GCGATG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 4 cut(s) 384, 667, 813, 828
BtsIMutI CAGTG 1 cut(s) 906
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 5 cut(s) 182, 703, 1077, 1199, 1376
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 49, 1001, 1356
CspAI ACCGGT 1 cut(s) 64
CviAII CATG 6 cut(s) 137, 941, 1076, 1223, 1419, 1448
CviQI GTAC 3 cut(s) 49, 1001, 1356
DdeI CTNAG 7 cut(s) 374, 573, 735, 776, 958, 1008, 1026
DpnI GATC 6 cut(s) 77, 416, 683, 1101, 1299, 1462
DpnII GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
Eam1104I CTCTTC 2 cut(s) 315, 513
EarI CTCTTC 2 cut(s) 315, 513
EciI GGCGGA 1 cut(s) 359
Ecl136II GAGCTC 1 cut(s) 1140
Eco130I CCWWGG 1 cut(s) 924
Eco147I AGGCCT 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 1108, 1142
Eco31I GGTCTC 1 cut(s) 1029
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 1140
Eco88I CYCGRG 1 cut(s) 1083
EcoICRI GAGCTC 1 cut(s) 1140
EcoRII CCWGG 2 cut(s) 684, 1292
EcoT14I CCWWGG 1 cut(s) 924
EcoT38I GRGCYC 2 cut(s) 1108, 1142
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 6 cut(s) 140, 944, 1079, 1226, 1422, 1451
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 53
FatI CATG 6 cut(s) 136, 940, 1075, 1222, 1418, 1447
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 4 cut(s) 121, 129, 150, 1372
FokI GGATG 4 cut(s) 391, 674, 820, 835
FriOI GRGCYC 2 cut(s) 1108, 1142
Fsp4HI GCNGC 4 cut(s) 121, 129, 150, 1372
FspBI CTAG 3 cut(s) 545, 566, 1109
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 121, 129, 150, 1372
HaeIII GGCC 3 cut(s) 37, 97, 974
HapII CCGG 2 cut(s) 65, 103
HhaI GCGC 1 cut(s) 154
Hin1II CATG 6 cut(s) 140, 944, 1079, 1226, 1422, 1451
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 2 cut(s) 615, 703
HinfI GANTC 8 cut(s) 436, 523, 562, 772, 897, 902, 1112, 1415
HpaII CCGG 2 cut(s) 65, 103
HphI GGTGA 3 cut(s) 1063, 1275, 1455
Hpy166II GTNNAC 2 cut(s) 454, 852
Hpy188I TCNGA 8 cut(s) 540, 591, 661, 777, 1029, 1117, 1180, 1455
Hpy188III TCNNGA 5 cut(s) 941, 960, 1083, 1085, 1472
Hpy8I GTNNAC 2 cut(s) 454, 852
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 4 cut(s) 91, 306, 951, 964
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 94, 878, 1039, 1448
HpyF3I CTNAG 7 cut(s) 374, 573, 735, 776, 958, 1008, 1026
HpySE526I ACGT 4 cut(s) 91, 306, 951, 964
Hsp92II CATG 6 cut(s) 140, 944, 1079, 1226, 1422, 1451
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
LmnI GCTCC 4 cut(s) 569, 1145, 1228, 1447
Lsp1109I GCAGC 2 cut(s) 132, 1383
LweI GCATC 3 cut(s) 132, 798, 1020
MaeI CTAG 3 cut(s) 545, 566, 1109
MaeII ACGT 4 cut(s) 91, 306, 951, 964
MaeIII GTNAC 3 cut(s) 19, 499, 1334
MalI GATC 6 cut(s) 77, 416, 683, 1101, 1299, 1462
MboI GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
MfeI CAATTG 1 cut(s) 530
MflI RGATCY 3 cut(s) 75, 681, 1297
MhlI GDGCHC 3 cut(s) 456, 1108, 1142
MluCI AATT 5 cut(s) 367, 530, 1070, 1276, 1483
MlyI GAGTC 3 cut(s) 430, 1106, 1409
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 6 cut(s) 399, 423, 441, 675, 815, 1555
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 65, 103
MspR9I CCNGG 2 cut(s) 686, 1294
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 2 cut(s) 686, 1294
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 5 cut(s) 43, 94, 878, 1039, 1448
NdeII GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
NlaIII CATG 6 cut(s) 140, 944, 1079, 1226, 1422, 1451
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 1334
NspI RCATGY 1 cut(s) 1079
NspV TTCGAA 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 161
PaeI GCATGC 1 cut(s) 1079
PaeR7I CTCGAG 1 cut(s) 1083
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 1039
PasI CCCWGGG 1 cut(s) 1293
PceI AGGCCT 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 523, 562, 772, 897, 902
PflMI CCANNNNNTGG 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 684
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 4 cut(s) 122, 130, 151, 1373
PleI GAGTC 3 cut(s) 430, 1106, 1409
PpsI GAGTC 3 cut(s) 430, 1106, 1409
Ppu21I YACGTR 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 1142
Psp6I CCWGG 2 cut(s) 684, 1292
PspGI CCWGG 2 cut(s) 684, 1292
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 1305
PsuI RGATCY 3 cut(s) 75, 681, 1297
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 50, 1002, 1357
RsaNI GTAC 3 cut(s) 49, 1001, 1356
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 1142
SaqAI TTAA 6 cut(s) 399, 423, 441, 675, 815, 1555
SatI GCNGC 4 cut(s) 121, 129, 150, 1372
Sau3AI GATC 6 cut(s) 75, 414, 681, 1099, 1297, 1460
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 3 cut(s) 430, 1106, 1409
ScrFI CCNGG 2 cut(s) 686, 1294
SduI GDGCHC 3 cut(s) 456, 1108, 1142
SfaNI GCATC 3 cut(s) 132, 798, 1020
SfcI CTRYAG 3 cut(s) 724, 852, 1301
Sfr274I CTCGAG 1 cut(s) 1083
SfuI TTCGAA 1 cut(s) 982
SinI GGWCC 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 1083
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 3 cut(s) 1083, 1135, 1240
SmoI CTYRAG 3 cut(s) 1083, 1135, 1240
SphI GCATGC 1 cut(s) 1079
Sse9I AATT 5 cut(s) 367, 530, 1070, 1276, 1483
SseBI AGGCCT 1 cut(s) 97
SsiI CCGC 5 cut(s) 129, 150, 344, 634, 1226
SspMI CTAG 3 cut(s) 545, 566, 1109
SstI GAGCTC 1 cut(s) 1142
StuI AGGCCT 1 cut(s) 97
StyD4I CCNGG 2 cut(s) 684, 1292
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 4 cut(s) 94, 309, 954, 967
TaqI TCGA 6 cut(s) 606, 900, 982, 1084, 1102, 1471
TaqII GACCGA 1 cut(s) 1322
TasI AATT 5 cut(s) 367, 530, 1070, 1276, 1483
TauI GCSGC 2 cut(s) 131, 152
TfiI GAWTC 5 cut(s) 523, 562, 772, 897, 902
Tru1I TTAA 6 cut(s) 399, 423, 441, 675, 815, 1555
Tru9I TTAA 6 cut(s) 399, 423, 441, 675, 815, 1555
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 1 cut(s) 1334
TseI GCWGC 2 cut(s) 120, 1371
Tsp45I GTSAC 1 cut(s) 1334
TspDTI ATGAA 3 cut(s) 125, 839, 1164
TspRI CASTG 1 cut(s) 913
Van91I CCANNNNNTGG 1 cut(s) 691
VneI GTGCAC 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 1 cut(s) 1483
XceI RCATGY 1 cut(s) 1079
XhoI CTCGAG 1 cut(s) 1083
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 3 cut(s) 545, 566, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.