MD03G1173500.v1.1

dihydrokaempferol 4-reductase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
23720612 .. 23724744
4133 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1173500.v1.1.491

Sequence Viewer

Length: 1572 bp
ATGTCATCCTCCTCTGCAACTGCAGTCACCGCAACAAGAAGATTTAAATGGCAGTACCCACCACCCCAACCAACACCAAGAATCCTCCACCTCCCTCGGAGACCTCGCCGGAGAGCTACCAAGAACGTTCATGGCGGAAAACACAATTCAGGGGAGGCCAGGAAGGACCACAAGGGAAAGCTGGAGGCTCTGTTTGATCAAGAGAGAGCTTTTTCGAGAACCGGTTCGCCGGTTGTGCTTCTAGAGTGTGGGGATGGGGAGGAGAGAGAGAGGAAGAGAGAGAGGGTTAGAGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGGGAGTGGTGGAGGAGGAGAGGTGGAGGTTTCAGGCTGAGATGCTGAGGGCGGAGTGTAATTTGTTAAGGATGGAGAGGGATATTGCTGAAAAGAAAATGGAGAGGACCAAGGTTAAGATGGAGAGGACTCTTAAATCAGCTGTGCACACTCTTGTTTCTGGGCAAAAGAAGATTTGCAACGGAAAGGTTTTGGAGGAAGAGATTCAACACTTGGCAGAGAAACTACAGAGGTTGCAAAGAAATTTACGCGTTAAGGATTCGGAGGTTGGGAAGAACTCTAGTAATTTTGATAAACAAGCCTATCATCTCCAAACAAGGCTTCAGAAGTTTAGGACGACATCGGATGAGATACGTGTGAAGGAGATCCAAGGGATGGCAGAAGCAAGCTTGTCGATCAAATCAAGCTCTCGAGTAAATGAGAACTTGGTTTCGGGTGGGAAAAGCAATGCGGAGATTCTGAGAAGGAAAATGGAGGGATTGTCGAATGGGATGTTATTAGAGAGGATCAAGGAAGAGTATGGTTCAATGCTGTCTACAGCCAATAGTTCGGTTGCCAGTTCTGCCTCTTCTTTCCAGAGAATTGAAGCTGCAAATCTGTCTTCTTCCTTGATACAACAAATTTACAAGGAGAAAGAGTCTCGTGAAGAGGACGTATGCTCAGGACGTTGCAAGGCAATAGTTCGAAGAATTGTAGAGCAAGTCCGAGTTGAGACAGAGCAATGGTCTCAGATGCAGGAGATGCTGGGGCAGGTGAGGGAGGAGATGGAAGAATTGCAGGCTTCTAGGGACTTTTGGGAAGATCGAGCTCTAGATTCTGATTACCAGATTCAATCCTTACGCTCAGCTGTGCAAGAATGGAGACAGAAAGCCATTTCATCTGAAAGCAAAGGAAGGGAGTTACAAGTGCAAGTGTCAACGCTCCAAGGAGAGCTTGATAGGTTGAGGAAGGAAGAAAGCACAAGACTAATGAAGTCCAACGGTTCGCCACTTATTCCCCGGAATCCACATAACGAAATGGAAAAGCGGGTACTGATTTGTCACTTGAAGGAAAATCAGCGTACCAAAGAAGACGGGCGCAAGCAAAGGGAGGGTTTAACTGATGAAAGTAAAAAACCAGACGCATACATCAACACAACACCTAATGCTCCGAAGCGAACGCCATTTCAAAACATCGGAAACTCCTCATTTTTGGCGAGGCAGAATGGCAAAGCAGCCTTCCCGTGTCATTACCCTCAACCTTCCAAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

524

Amino Acids

60.16

Weight (kDa)

9.36

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1060
Acc36I ACCTGC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 694
AccI GTMKAC 1 cut(s) 854
AccII CGCG 1 cut(s) 570
AciI CCGC 5 cut(s) 30, 135, 371, 770, 1345
AclI AACGTT 1 cut(s) 126
AclWI GGATC 2 cut(s) 679, 833
AcsI RAATTY 2 cut(s) 562, 939
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 3 cut(s) 56, 1350, 1381
AfiI CCNNNNNNNGG 1 cut(s) 694
AflIII ACRYGT 2 cut(s) 568, 673
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 6 cut(s) 527, 846, 905, 1151, 1366, 1487
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 624, 656
Alw21I GWGCWC 2 cut(s) 468, 1129
Alw26I GTCTC 5 cut(s) 94, 963, 1025, 1050, 1174
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 2 cut(s) 679, 833
Ama87I CYCGRG 1 cut(s) 729
AoxI GGCC 1 cut(s) 156
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 908, 1532
ApoI RAATTY 2 cut(s) 562, 939
AsiGI ACCGGT 1 cut(s) 221
Asp700I GAANNNNTTC 2 cut(s) 223, 522
AspLEI GCGC 1 cut(s) 1398
AspS9I GGNCC 2 cut(s) 166, 426
AsuC2I CCSGG 1 cut(s) 1318
AsuHPI GGTGA 2 cut(s) 19, 1084
AsuII TTCGAA 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 729
AvaII GGWCC 2 cut(s) 166, 426
BaeGI GKGCMC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 1129
BauI CACGAG 1 cut(s) 960
BbsI GAAGAC 2 cut(s) 912, 1395
Bbv12I GWGCWC 2 cut(s) 468, 1129
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 895, 1544
BccI CCATC 5 cut(s) 248, 385, 433, 688, 1078
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 1 cut(s) 160
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 1318
BcoDI GTCTC 5 cut(s) 94, 963, 1025, 1050, 1174
BfaI CTAG 4 cut(s) 242, 600, 1104, 1130
BfmI CTRYAG 3 cut(s) 21, 545, 855
BfuAI ACCTGC 1 cut(s) 1060
BisI GCNGC 2 cut(s) 909, 1533
BlpI GCTNAGC 1 cut(s) 1162
BlsI GCNGC 2 cut(s) 910, 1534
Bme1390I CCNGG 2 cut(s) 160, 1318
Bme18I GGWCC 2 cut(s) 166, 426
BmeT110I CYCGRG 1 cut(s) 729
BmgT120I GGNCC 2 cut(s) 166, 426
BmrFI CCNGG 2 cut(s) 160, 1318
BmsI GCATC 3 cut(s) 351, 1041, 1050
BpiI GAAGAC 2 cut(s) 912, 1395
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 2 cut(s) 365, 979
Bpu1102I GCTNAGC 1 cut(s) 1162
Bpu14I TTCGAA 1 cut(s) 1003
BpuMI CCSGG 1 cut(s) 1318
BsaAI YACGTR 1 cut(s) 674
BsaI GGTCTC 2 cut(s) 94, 1050
BsaJI CCNNGG 5 cut(s) 95, 429, 688, 1243, 1316
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 8 cut(s) 176, 206, 326, 356, 785, 815, 941, 971
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse118I RCCGGY 2 cut(s) 221, 229
Bse1I ACTGG 1 cut(s) 876
Bse3DI GCAATG 2 cut(s) 772, 1046
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 5 cut(s) 95, 429, 688, 1243, 1316
BseGI GGATG 6 cut(s) 5, 259, 396, 670, 699, 816
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMI GCAATG 2 cut(s) 772, 1046
BseMII CTCAG 6 cut(s) 348, 356, 770, 993, 1061, 1176
BseNI ACTGG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 468
BseXI GCAGC 2 cut(s) 895, 1544
BseYI CCCAGC 1 cut(s) 1063
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 468, 1129
BsiHKCI CYCGRG 1 cut(s) 729
BsiSI CCGG 4 cut(s) 109, 222, 230, 1318
BslFI GGGAC 1 cut(s) 1121
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 5 cut(s) 94, 963, 1025, 1050, 1174
BsmFI GGGAC 1 cut(s) 1121
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 2 cut(s) 94, 1050
BsoBI CYCGRG 1 cut(s) 729
Bsp119I TTCGAA 1 cut(s) 1003
Bsp1286I GDGCHC 2 cut(s) 468, 1129
Bsp143I GATC 5 cut(s) 196, 684, 714, 825, 1120
Bsp1720I GCTNAGC 1 cut(s) 1162
BspACI CCGC 5 cut(s) 30, 135, 371, 770, 1345
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 6 cut(s) 349, 357, 771, 992, 1060, 1175
BspFNI CGCG 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 1060
BspPI GGATC 2 cut(s) 679, 833
BspT104I TTCGAA 1 cut(s) 1003
BspTNI GGTCTC 2 cut(s) 94, 1050
BsrDI GCAATG 2 cut(s) 772, 1046
BsrFI RCCGGY 2 cut(s) 221, 229
BsrI ACTGG 1 cut(s) 876
BssAI RCCGGY 2 cut(s) 221, 229
BssECI CCNNGG 5 cut(s) 95, 429, 688, 1243, 1316
BssMI GATC 5 cut(s) 196, 684, 714, 825, 1120
BssSI CACGAG 1 cut(s) 960
BssT1I CCWWGG 3 cut(s) 429, 688, 1243
Bst2BI CACGAG 1 cut(s) 960
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 1301
Bst6I CTCTTC 5 cut(s) 269, 513, 828, 892, 960
BstAPI GCANNNNNTGC 1 cut(s) 1060
BstBAI YACGTR 1 cut(s) 674
BstBI TTCGAA 1 cut(s) 1003
BstC8I GCNNGC 3 cut(s) 706, 1098, 1400
BstDEI CTNAG 6 cut(s) 357, 365, 779, 979, 1047, 1162
BstF5I GGATG 6 cut(s) 5, 259, 396, 670, 699, 816
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 1398
BstKTI GATC 5 cut(s) 199, 687, 717, 828, 1123
BstMAI GTCTC 5 cut(s) 94, 963, 1025, 1050, 1174
BstMBI GATC 5 cut(s) 196, 684, 714, 825, 1120
BstMWI GCNNNNNNNGC 4 cut(s) 29, 235, 881, 1060
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 158, 1316
BstSFI CTRYAG 3 cut(s) 21, 545, 855
BstSLI GKGCMC 1 cut(s) 468
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 895, 1544
BstV2I GAAGAC 2 cut(s) 912, 1395
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 6 cut(s) 5, 259, 396, 670, 699, 816
BveI ACCTGC 1 cut(s) 1060
Cac8I GCNNGC 3 cut(s) 706, 1098, 1400
CfoI GCGC 1 cut(s) 1398
Cfr10I RCCGGY 2 cut(s) 221, 229
Cfr13I GGNCC 2 cut(s) 166, 426
CseI GACGC 1 cut(s) 1448
Csp6I GTAC 3 cut(s) 55, 1349, 1380
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 1 cut(s) 131
CviQI GTAC 3 cut(s) 55, 1349, 1380
DdeI CTNAG 6 cut(s) 357, 365, 779, 979, 1047, 1162
DpnI GATC 5 cut(s) 198, 686, 716, 827, 1122
DpnII GATC 5 cut(s) 196, 684, 714, 825, 1120
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 5 cut(s) 269, 513, 828, 892, 960
EarI CTCTTC 5 cut(s) 269, 513, 828, 892, 960
EciI GGCGGA 2 cut(s) 150, 386
Ecl136II GAGCTC 1 cut(s) 1127
Eco130I CCWWGG 3 cut(s) 429, 688, 1243
Eco24I GRGCYC 1 cut(s) 1129
Eco31I GGTCTC 2 cut(s) 94, 1050
Eco47I GGWCC 2 cut(s) 166, 426
Eco53kI GAGCTC 1 cut(s) 1127
Eco57I CTGAAG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 729
EcoICRI GAGCTC 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 3 cut(s) 429, 688, 1243
EcoT38I GRGCYC 1 cut(s) 1129
ErhI CCWWGG 3 cut(s) 429, 688, 1243
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 132, 840, 976, 1329, 1444, 1570
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 1 cut(s) 1121
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 1338
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 2 cut(s) 909, 1533
FokI GGATG 5 cut(s) 266, 403, 677, 706, 823
FriOI GRGCYC 1 cut(s) 1129
Fsp4HI GCNGC 2 cut(s) 909, 1533
FspBI CTAG 4 cut(s) 242, 600, 1104, 1130
GlaI GCGC 1 cut(s) 1397
GluI GCNGC 2 cut(s) 909, 1533
GsaI CCCAGC 1 cut(s) 1067
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 158
HapII CCGG 4 cut(s) 109, 222, 230, 1318
HgaI GACGC 1 cut(s) 1448
HhaI GCGC 1 cut(s) 1398
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 1396
HinP1I GCGC 1 cut(s) 1396
HincII GTYRAC 1 cut(s) 1236
HindII GTYRAC 1 cut(s) 1236
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 9 cut(s) 81, 448, 523, 578, 775, 956, 1133, 1147, 1321
HpaII CCGG 4 cut(s) 109, 222, 230, 1318
HphI GGTGA 2 cut(s) 19, 1084
Hpy166II GTNNAC 3 cut(s) 466, 855, 1236
Hpy188III TCNNGA 8 cut(s) 200, 216, 242, 729, 895, 962, 981, 1130
Hpy8I GTNNAC 3 cut(s) 466, 855, 1236
HpyAV CCTTC 8 cut(s) 157, 673, 777, 1206, 1261, 1360, 1546, 1569
HpyCH4III ACNGT 1 cut(s) 1301
HpyCH4IV ACGT 4 cut(s) 126, 673, 972, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 235, 881, 1060
HpyF3I CTNAG 6 cut(s) 357, 365, 779, 979, 1047, 1162
HpySE526I ACGT 4 cut(s) 126, 673, 972, 985
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 1396
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 5 cut(s) 196, 684, 714, 825, 1120
LmnI GCTCC 2 cut(s) 1245, 1471
Lsp1109I GCAGC 2 cut(s) 895, 1544
LweI GCATC 3 cut(s) 351, 1041, 1050
MaeI CTAG 4 cut(s) 242, 600, 1104, 1130
MaeII ACGT 4 cut(s) 126, 673, 972, 985
MaeIII GTNAC 3 cut(s) 25, 1218, 1358
MalI GATC 5 cut(s) 198, 686, 716, 827, 1122
MboI GATC 5 cut(s) 196, 684, 714, 825, 1120
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 2 cut(s) 468, 1129
MluCI AATT 8 cut(s) 145, 379, 562, 604, 900, 939, 1008, 1091
MluI ACGCGT 1 cut(s) 568
MlyI GAGTC 2 cut(s) 442, 965
MmeI TCCRAC 1 cut(s) 1320
MroXI GAANNNNTTC 2 cut(s) 223, 522
MseI TTAA 6 cut(s) 45, 386, 435, 453, 573, 1415
MspA1I CMGCKG 2 cut(s) 461, 1166
MspI CCGG 4 cut(s) 109, 222, 230, 1318
MspR9I CCNGG 2 cut(s) 160, 1318
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 4 cut(s) 29, 235, 881, 1060
NciI CCSGG 1 cut(s) 1318
NdeII GATC 5 cut(s) 196, 684, 714, 825, 1120
NlaIII CATG 1 cut(s) 134
NmuCI GTSAC 2 cut(s) 25, 1358
NspV TTCGAA 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 729
PaqCI CACCTGC 1 cut(s) 1060
PdmI GAANNNNTTC 2 cut(s) 223, 522
PfeI GAWTC 7 cut(s) 81, 523, 578, 775, 1133, 1147, 1321
PflMI CCANNNNNTGG 1 cut(s) 694
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 2 cut(s) 910, 1534
PleI GAGTC 2 cut(s) 442, 964
PpsI GAGTC 2 cut(s) 442, 964
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 1129
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 1063
PspGI CCWGG 1 cut(s) 158
PspPI GGNCC 2 cut(s) 166, 426
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 684
PvuII CAGCTG 2 cut(s) 461, 1166
RsaI GTAC 3 cut(s) 56, 1350, 1381
RsaNI GTAC 3 cut(s) 55, 1349, 1380
SacI GAGCTC 1 cut(s) 1129
SaqAI TTAA 6 cut(s) 45, 386, 435, 453, 573, 1415
SatI GCNGC 2 cut(s) 909, 1533
Sau3AI GATC 5 cut(s) 196, 684, 714, 825, 1120
Sau96I GGNCC 2 cut(s) 166, 426
SchI GAGTC 2 cut(s) 442, 965
ScrFI CCNGG 2 cut(s) 160, 1318
SduI GDGCHC 2 cut(s) 468, 1129
SfaNI GCATC 3 cut(s) 351, 1041, 1050
SfcI CTRYAG 3 cut(s) 21, 545, 855
Sfr274I CTCGAG 1 cut(s) 729
SfuI TTCGAA 1 cut(s) 1003
SinI GGWCC 2 cut(s) 166, 426
SlaI CTCGAG 1 cut(s) 729
SmiI ATTTAAAT 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 729
SmoI CTYRAG 1 cut(s) 729
Sse9I AATT 8 cut(s) 145, 379, 562, 604, 900, 939, 1008, 1091
SsiI CCGC 5 cut(s) 30, 135, 371, 770, 1345
SspMI CTAG 4 cut(s) 242, 600, 1104, 1130
SstI GAGCTC 1 cut(s) 1129
StyD4I CCNGG 2 cut(s) 158, 1316
StyI CCWWGG 3 cut(s) 429, 688, 1243
SwaI ATTTAAAT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 1301
TaiI ACGT 4 cut(s) 129, 676, 975, 988
TaqI TCGA 6 cut(s) 215, 713, 730, 803, 1003, 1123
TasI AATT 8 cut(s) 145, 379, 562, 604, 900, 939, 1008, 1091
TfiI GAWTC 7 cut(s) 81, 523, 578, 775, 1133, 1147, 1321
Tru1I TTAA 6 cut(s) 45, 386, 435, 453, 573, 1415
Tru9I TTAA 6 cut(s) 45, 386, 435, 453, 573, 1415
TseFI GTSAC 2 cut(s) 25, 1358
TseI GCWGC 2 cut(s) 908, 1532
Tsp45I GTSAC 2 cut(s) 25, 1358
TspDTI ATGAA 4 cut(s) 119, 1185, 1304, 1437
TspGWI ACGGA 1 cut(s) 516
Van91I CCANNNNNTGG 1 cut(s) 694
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 166, 426
XapI RAATTY 2 cut(s) 562, 939
XbaI TCTAGA 2 cut(s) 241, 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XhoI CTCGAG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 854
XmnI GAANNNNTTC 2 cut(s) 223, 522
XspI CTAG 4 cut(s) 242, 600, 1104, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.