AT1G52191

acyl-CoA hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015145
Physical Location & Seq
Reverse (-)
19439367 .. 19441724
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52191.1

Sequence Viewer

Length: 417 bp
ATGTTTCTTTTCATCCTCGAAGGCCTTCAAGTCATCCATGTTGGAAGAGGGATCGTACGGTGTAAATTGACAGTAACGCATCATGTTTTGAATGAAGACGGGACCTTACACACTGCAGCGATTGGGGTTCTGATGGAGTTGATGGGAGCCATCGCGATCTACTCGGCTGGAGGATCCCATACCTCAGTTGATCTCAACTATTCGTTATACTCGACAGCCAAGATTCAAGAAGAAATAAAGATAGAAGCAAGAGTGGTAGGGAAGAGATCAGAGAACCTAAACTCAGCAATAATTGAGATTCGAAGAGAATACGAAGAAGAACTCATTGCCACAGGTAGACTATGGATGAGCCTGTTGAAGACACCATTTAGCCTAAATGTCAAACACAATGGTGTTGATCAAGTTAGCAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

138

Amino Acids

15.33

Weight (kDa)

6.59

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52191 AT3G16175
fragaria_vesca FvH4_6g31870 FvH4_6g31870
rosa_chinensis RchiOBHm_Chr2g0139201
rosa_laevigata RLG00000019794
rosa_multiflora Rmu_sc0001803.1_g000007 Rmu_sc0037230.1_g000003
rosa_roxburghii Rroxscaffold_2G00105560
rosa_rugosa Rorug02G0355500 Rorug02G0355500
rosa_samantha Rh2AG405700 Rh2BG416200 Rh2CG391700 Rh2DG425400
rosa_wichuraiana Rw2G033130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 337
AccII CGCG 1 cut(s) 155
AclWI GGATC 3 cut(s) 59, 168, 181
AfaI GTAC 1 cut(s) 57
AgsI TTSAA 4 cut(s) 29, 91, 227, 358
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
AlwI GGATC 3 cut(s) 59, 168, 181
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 102
AsuII TTCGAA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 102
BamHI GGATCC 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 102, 365
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 127, 136, 158
BclI TGATCA 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 3 cut(s) 103, 148, 175
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 2 cut(s) 102, 365
BpmI CTGGAG 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 324
BseGI GGATG 3 cut(s) 12, 33, 351
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 198, 297
BseXI GCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 24
BsiWI CGTACG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 301
Bsp143I GATC 6 cut(s) 51, 156, 173, 190, 266, 397
Bsp68I TCGCGA 1 cut(s) 155
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 2 cut(s) 197, 296
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 103, 148, 175
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 3 cut(s) 59, 168, 181
BspT104I TTCGAA 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 324
BssMI GATC 6 cut(s) 51, 156, 173, 190, 266, 397
Bst4CI ACNGT 2 cut(s) 60, 73
Bst6I CTCTTC 3 cut(s) 40, 257, 298
BstBI TTCGAA 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 2 cut(s) 184, 283
BstF5I GGATG 3 cut(s) 12, 33, 351
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 6 cut(s) 54, 159, 176, 193, 269, 400
BstMBI GATC 6 cut(s) 51, 156, 173, 190, 266, 397
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 102, 365
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 3 cut(s) 12, 33, 351
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 38, 83
CviJI RGCY 7 cut(s) 24, 149, 167, 218, 351, 372, 412
CviKI_1 RGCY 7 cut(s) 24, 149, 167, 218, 351, 372, 412
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 2 cut(s) 184, 283
DpnI GATC 6 cut(s) 53, 158, 175, 192, 268, 399
DpnII GATC 6 cut(s) 51, 156, 173, 190, 266, 397
Eam1104I CTCTTC 3 cut(s) 40, 257, 298
EarI CTCTTC 3 cut(s) 40, 257, 298
Eco147I AGGCCT 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 102
FaeI CATG 2 cut(s) 41, 86
FaiI YATR 5 cut(s) 39, 84, 180, 208, 343
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 37, 82
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 20, 358
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 24
Hin1II CATG 2 cut(s) 41, 86
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 2 cut(s) 223, 298
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 132, 271
Hpy188III TCNNGA 2 cut(s) 154, 227
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 14, 35
HpyCH4III ACNGT 2 cut(s) 60, 73
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 184, 283
Hsp92II CATG 2 cut(s) 41, 86
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 51, 156, 173, 190, 266, 397
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 3 cut(s) 153, 318, 365
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 73
MalI GATC 6 cut(s) 53, 158, 175, 192, 268, 399
MboI GATC 6 cut(s) 51, 156, 173, 190, 266, 397
MboII GAAGA 8 cut(s) 57, 107, 242, 274, 315, 326, 329, 370
MflI RGATCY 1 cut(s) 173
MluCI AATT 2 cut(s) 65, 291
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 26, 41, 164, 193
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 390
MvnI CGCG 1 cut(s) 155
NdeII GATC 6 cut(s) 51, 156, 173, 190, 266, 397
NlaIII CATG 2 cut(s) 41, 86
NlaIV GGNNCC 3 cut(s) 103, 148, 175
NmeAIII GCCGAG 1 cut(s) 143
NruI TCGCGA 1 cut(s) 155
NspV TTCGAA 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 390
PceI AGGCCT 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 223, 298
Pfl23II CGTACG 1 cut(s) 55
PkrI GCNGC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 102
PspLI CGTACG 1 cut(s) 55
PspN4I GGNNCC 3 cut(s) 103, 148, 175
PspPI GGNCC 1 cut(s) 102
PspPPI RGGWCCY 1 cut(s) 102
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 173
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 6 cut(s) 51, 156, 173, 190, 266, 397
Sau96I GGNCC 1 cut(s) 102
SetI ASST 5 cut(s) 107, 185, 279, 337, 414
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 301
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 2 cut(s) 65, 291
SseBI AGGCCT 1 cut(s) 24
StuI AGGCCT 1 cut(s) 24
TaaI ACNGT 2 cut(s) 60, 73
TaqI TCGA 3 cut(s) 18, 212, 301
TasI AATT 2 cut(s) 65, 291
TfiI GAWTC 2 cut(s) 223, 298
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.