AT3G16175
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015145
Physical Location & Seq
Forward (+)
5480416 .. 5481379
964 bp
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UTR
Exon/CDS
Intron
AT3G16175.1

Sequence Viewer

Length: 474 bp
ATGGTAGATCCAACGATCCATAACACGACGACGTATCTCGAAGAGATAGCAAAAGGAAACGGGCAAACCGAGTTCGAGATTTTAATCTTGAAAGGCTTAGAACTCATCCATGTCGGGAAAGGGATCTTACGTTGTAAATTACTTGTCACAGATCATGTCGTGGGAGAAGATGGAAGTTGGAATGCGGGAGTGATTACGGCGGTGATGGACTCGATCGGAGCGTCAGCTGTGTACTCCTCCGGCGGCGGACTCCATATCTCTGTTGATCTCAACTCTTCGTTTTATTCAACGGCCAAGATTCACGAAACGGTAGAGATAGAAGCAAGAGTGAATGGAAGCAATGGAGGATTAAAATCAGCTGTGATTGAGATTAGAAGAGAAACAAGTGGAGAAATTATAGCCACAGGAAGATTGTGGATGGCTCCACTTAGCGTCAAAGCCATACAAAATGTTTCTACTCTTAGTAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

157

Amino Acids

16.7

Weight (kDa)

5.7

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 58 - 128 1.9e-06 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52191 AT3G16175
fragaria_vesca FvH4_6g31870 FvH4_6g31870
rosa_chinensis RchiOBHm_Chr2g0139201
rosa_laevigata RLG00000019794
rosa_multiflora Rmu_sc0001803.1_g000007 Rmu_sc0037230.1_g000003
rosa_roxburghii Rroxscaffold_2G00105560
rosa_rugosa Rorug02G0355500 Rorug02G0355500
rosa_samantha Rh2AG405700 Rh2BG416200 Rh2CG391700 Rh2DG425400
rosa_wichuraiana Rw2G033130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 185, 200, 243, 246
AclWI GGATC 3 cut(s) 2, 10, 131
AcoI YGGCCR 1 cut(s) 291
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 2 cut(s) 91, 288
AluBI AGCT 3 cut(s) 227, 359, 469
AluI AGCT 3 cut(s) 227, 359, 469
AlwI GGATC 3 cut(s) 2, 10, 131
AoxI GGCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 214
BccI CCATC 3 cut(s) 164, 199, 412
BceAI ACGGC 2 cut(s) 213, 306
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 423
BsaBI GATNNNNATC 2 cut(s) 83, 352
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 2 cut(s) 83, 352
BseGI GGATG 2 cut(s) 105, 423
BseJI GATNNNNATC 2 cut(s) 83, 352
BseMI GCAATG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 216
BsiSI CCGG 1 cut(s) 240
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 6 cut(s) 7, 15, 123, 151, 213, 265
BspACI CCGC 4 cut(s) 185, 200, 243, 246
BspANI GGCC 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 3 cut(s) 2, 10, 131
BsrDI GCAATG 1 cut(s) 346
BssMI GATC 6 cut(s) 7, 15, 123, 151, 213, 265
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 3 cut(s) 36, 280, 370
BstDEI CTNAG 3 cut(s) 97, 428, 461
BstF5I GGATG 2 cut(s) 105, 423
BstKTI GATC 6 cut(s) 10, 18, 126, 154, 216, 268
BstMBI GATC 6 cut(s) 7, 15, 123, 151, 213, 265
BstMCI CGRYCG 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 7, 123
BstYI RGATCY 2 cut(s) 7, 123
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 105, 423
CseI GACGC 2 cut(s) 210, 421
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 110, 155
CviJI RGCY 8 cut(s) 96, 227, 293, 359, 401, 422, 440, 469
CviKI_1 RGCY 8 cut(s) 96, 227, 293, 359, 401, 422, 440, 469
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 3 cut(s) 97, 428, 461
DpnI GATC 6 cut(s) 9, 17, 125, 153, 215, 267
DpnII GATC 6 cut(s) 7, 15, 123, 151, 213, 265
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 3 cut(s) 36, 280, 370
EarI CTCTTC 3 cut(s) 36, 280, 370
EciI GGCGGA 1 cut(s) 261
FaeI CATG 2 cut(s) 113, 158
FaiI YATR 6 cut(s) 21, 111, 156, 255, 398, 443
FatI CATG 2 cut(s) 109, 154
FauI CCCGC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 92, 430
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 240
HgaI GACGC 2 cut(s) 210, 421
Hin1II CATG 2 cut(s) 113, 158
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 3 cut(s) 209, 249, 298
HpaII CCGG 1 cut(s) 240
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 5 cut(s) 38, 76, 88, 115, 302
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 31, 34
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 32, 130
HpyF3I CTNAG 3 cut(s) 97, 428, 461
HpySE526I ACGT 2 cut(s) 32, 130
Hsp92II CATG 2 cut(s) 113, 158
Kzo9I GATC 6 cut(s) 7, 15, 123, 151, 213, 265
LmnI GCTCC 2 cut(s) 218, 427
LpnPI CCDG 2 cut(s) 253, 390
MaeII ACGT 2 cut(s) 32, 130
MaeIII GTNAC 1 cut(s) 145
MalI GATC 6 cut(s) 9, 17, 125, 153, 215, 267
MboI GATC 6 cut(s) 7, 15, 123, 151, 213, 265
MboII GAAGA 5 cut(s) 53, 179, 267, 387, 420
MflI RGATCY 2 cut(s) 7, 123
MluCI AATT 2 cut(s) 137, 393
MlyI GAGTC 2 cut(s) 203, 243
MmeI TCCRAC 2 cut(s) 35, 158
MnlI CCTC 2 cut(s) 247, 338
MseI TTAA 2 cut(s) 83, 350
MspA1I CMGCKG 2 cut(s) 227, 359
MspI CCGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 187
NdeII GATC 6 cut(s) 7, 15, 123, 151, 213, 265
NlaIII CATG 2 cut(s) 113, 158
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 218
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 1 cut(s) 245
Ple19I CGATCG 1 cut(s) 216
PleI GAGTC 2 cut(s) 203, 243
PpsI GAGTC 2 cut(s) 203, 243
PspN4I GGNNCC 1 cut(s) 423
PsuI RGATCY 2 cut(s) 7, 123
PvuI CGATCG 1 cut(s) 216
PvuII CAGCTG 2 cut(s) 227, 359
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 83, 350
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 6 cut(s) 7, 15, 123, 151, 213, 265
SchI GAGTC 2 cut(s) 203, 243
SetI ASST 5 cut(s) 35, 133, 229, 361, 471
Sse9I AATT 2 cut(s) 137, 393
SsiI CCGC 4 cut(s) 185, 200, 243, 246
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 35, 133
TaqI TCGA 3 cut(s) 39, 75, 212
TasI AATT 2 cut(s) 137, 393
TatI WGTACW 1 cut(s) 231
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 83, 350
Tru9I TTAA 2 cut(s) 83, 350
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.