Rmu_sc0037230.1_g000003
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037230.1
OG0015145
Physical Location & Seq
Forward (+)
8936 .. 9534
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037230.1_g000003.1.cds

Sequence Viewer

Length: 377 bp
atggaagacgagaagctacagaagtccaagaaatggctgcacgatctgtcgacaggtgccaaaggtatcaacgagctagaggccttaactcatgttggcctgcaggtcatgaatgcccgcaagggcttcttccgctgcaacttcatcgttccagaccatctctctgaccaggatggaaactggcatgtcggagctatcgcaactgtgatcgacgatgttggggccgccaccgtatattcaactgttggtgatgtcaaatccgttgacttcaccatttcatattactccagggtcaagactagagaagaggttgagttggaggctgagattgtaggggacatggggaagctcatatgtgtggtggtaaaggtgacaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

5.29

Isoelectric Point (pI)

8.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52191 AT3G16175
fragaria_vesca FvH4_6g31870 FvH4_6g31870
rosa_chinensis RchiOBHm_Chr2g0139201
rosa_laevigata RLG00000019794
rosa_multiflora Rmu_sc0001803.1_g000007 Rmu_sc0037230.1_g000003
rosa_roxburghii Rroxscaffold_2G00105560
rosa_rugosa Rorug02G0355500 Rorug02G0355500
rosa_samantha Rh2AG405700 Rh2BG416200 Rh2CG391700 Rh2DG425400
rosa_wichuraiana Rw2G033130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 1 cut(s) 50
AciI CCGC 3 cut(s) 118, 133, 225
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 2 cut(s) 168, 287
AluBI AGCT 4 cut(s) 16, 76, 194, 349
AluI AGCT 4 cut(s) 16, 76, 194, 349
AoxI GGCC 3 cut(s) 81, 97, 222
ApeKI GCWGC 2 cut(s) 37, 135
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 260, 262
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 24, 122
BccI CCATC 2 cut(s) 165, 167
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 2 cut(s) 170, 289
BfaI CTAG 2 cut(s) 77, 300
BfmI CTRYAG 2 cut(s) 17, 101
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 3 cut(s) 38, 136, 225
BlsI GCNGC 3 cut(s) 39, 137, 226
Bme1390I CCNGG 2 cut(s) 170, 289
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 58, 223
BmrFI CCNGG 2 cut(s) 170, 289
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 170, 289
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 24, 122
BsgI GTGCAG 1 cut(s) 23
BshFI GGCC 3 cut(s) 83, 99, 224
BshNI GGYRCC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 3 cut(s) 83, 99, 224
Bsp143I GATC 2 cut(s) 43, 207
BspACI CCGC 3 cut(s) 118, 133, 225
BspANI GGCC 3 cut(s) 83, 99, 224
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 58, 223
BspMAI CTGCAG 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 43, 207
Bst2UI CCWGG 2 cut(s) 170, 289
Bst4CI ACNGT 3 cut(s) 205, 232, 244
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 101, 118
BstDEI CTNAG 1 cut(s) 324
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 2 cut(s) 46, 210
BstMBI GATC 2 cut(s) 43, 207
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 170, 289
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 168, 287
BstSFI CTRYAG 2 cut(s) 17, 101
BstV1I GCAGC 2 cut(s) 24, 122
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 3 cut(s) 83, 99, 224
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 101, 118
CciI TCATGA 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 222
CviAII CATG 4 cut(s) 92, 109, 185, 340
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 45, 209
DpnII GATC 2 cut(s) 43, 207
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 168, 287
FaeI CATG 4 cut(s) 95, 112, 188, 343
FaiI YATR 8 cut(s) 93, 110, 186, 235, 280, 341, 353, 355
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 91, 108, 184, 339
FauI CCCGC 1 cut(s) 125
FauNDI CATATG 1 cut(s) 353
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 38, 136, 225
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 3 cut(s) 38, 136, 225
FspBI CTAG 2 cut(s) 77, 300
GluI GCNGC 3 cut(s) 38, 136, 225
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 3 cut(s) 83, 99, 224
Hin1II CATG 4 cut(s) 95, 112, 188, 343
HincII GTYRAC 2 cut(s) 51, 265
HindII GTYRAC 2 cut(s) 51, 265
HphI GGTGA 2 cut(s) 260, 262
Hpy166II GTNNAC 2 cut(s) 51, 265
Hpy188I TCNGA 2 cut(s) 166, 191
Hpy188III TCNNGA 3 cut(s) 109, 152, 295
Hpy8I GTNNAC 2 cut(s) 51, 265
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 205, 232, 244
HpyCH4V TGCA 3 cut(s) 40, 103, 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 4 cut(s) 95, 112, 188, 343
Kzo9I GATC 2 cut(s) 43, 207
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 9 cut(s) 39, 89, 113, 155, 165, 166, 182, 274, 301
Lsp1109I GCAGC 2 cut(s) 24, 122
MaeI CTAG 2 cut(s) 77, 300
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 45, 209
MboI GATC 2 cut(s) 43, 207
MboII GAAGA 3 cut(s) 17, 121, 317
MmeI TCCRAC 2 cut(s) 169, 297
MnlI CCTC 3 cut(s) 73, 301, 313
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 170, 289
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 2 cut(s) 170, 289
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeI CATATG 1 cut(s) 353
NdeII GATC 2 cut(s) 43, 207
NlaIII CATG 4 cut(s) 95, 112, 188, 343
NlaIV GGNNCC 2 cut(s) 58, 223
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 188
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 1 cut(s) 83
PctI GAATGC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 3 cut(s) 39, 137, 226
Psp6I CCWGG 2 cut(s) 168, 287
PspGI CCWGG 2 cut(s) 168, 287
PspN4I GGNNCC 2 cut(s) 58, 223
PspPI GGNCC 1 cut(s) 222
PstI CTGCAG 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 356
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 38, 136, 225
Sau3AI GATC 2 cut(s) 43, 207
Sau96I GGNCC 1 cut(s) 222
SbfI CCTGCAGG 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 170, 289
SdaI CCTGCAGG 1 cut(s) 105
SetI ASST 9 cut(s) 18, 58, 67, 78, 108, 196, 312, 351, 372
SfcI CTRYAG 2 cut(s) 17, 101
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse8387I CCTGCAGG 1 cut(s) 105
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 3 cut(s) 118, 133, 225
SspMI CTAG 2 cut(s) 77, 300
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 2 cut(s) 168, 287
TaaI ACNGT 3 cut(s) 205, 232, 244
TaqI TCGA 2 cut(s) 50, 210
TauI GCSGC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 37, 135
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 125, 133, 267
TspGWI ACGGA 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 33
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 50
XspI CTAG 2 cut(s) 77, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.