FvH4_6g31870
ERF Family

Thioesterase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015145
Physical Location & Seq
Forward (+)
24946790 .. 24953965
7176 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31870.t1

Sequence Viewer

Length: 471 bp
ATGGAAGACGAGAAGCTGCAGGAGTCCAAGAAATGGCTTCACTATTTGTCGACAGGTGCCAAAGGTATCAATGAACTGGAGGCCTTAACTCTAATTGGCCTACAGGTTCTGAATGCCCACAAGGGCTTCTTCCACTGCAACTTCATCGTTCCAGACCATCTCTCTGACCAAGATGGAAACTGGCATGTCGGAGCTATCGCAACTATGATCGACGATGTTGGAGCCGCCGCAGTATACTCAACTGTTGGTCTTGCCAAAACCGTTGACATCACCCTTTCATATTACTCGAGGGTCAAGATTAGAGAAGAGGTTGAGTTGGTGGCTGATATTGTAGGGGACATGGGGAAGCTCATATGTGTGGTGGTGAAGGTAACAAGGAAAGAGAATGGAGAAATGGTTGCTTTGGGTAAGCAATGGATGGCCTCATTTTCACCCAAGACCAAGCTATCTCAAGTCAGTAGTAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

157

Amino Acids

17.21

Weight (kDa)

6.19

Isoelectric Point (pI)

21.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT PF03061 59 - 131 1e-05 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52191 AT3G16175
fragaria_vesca FvH4_6g31870 FvH4_6g31870
rosa_chinensis RchiOBHm_Chr2g0139201
rosa_laevigata RLG00000019794
rosa_multiflora Rmu_sc0001803.1_g000007 Rmu_sc0037230.1_g000003
rosa_roxburghii Rroxscaffold_2G00105560
rosa_rugosa Rorug02G0355500 Rorug02G0355500
rosa_samantha Rh2AG405700 Rh2BG416200 Rh2CG391700 Rh2DG425400
rosa_wichuraiana Rw2G033130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 2 cut(s) 50, 234
AciI CCGC 2 cut(s) 225, 228
AfiI CCNNNNNNNGG 1 cut(s) 33
AluBI AGCT 4 cut(s) 16, 194, 349, 445
AluI AGCT 4 cut(s) 16, 194, 349, 445
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 81, 97, 420
ApeKI GCWGC 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 262, 376, 423
AvaI CYCGRG 1 cut(s) 286
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 3
BccI CCATC 3 cut(s) 165, 167, 412
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BfmI CTRYAG 2 cut(s) 17, 101
BisI GCNGC 3 cut(s) 17, 225, 228
BlsI GCNGC 3 cut(s) 18, 226, 229
BmeT110I CYCGRG 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 58, 223
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 81, 185
Bse3DI GCAATG 1 cut(s) 419
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 81, 185
BseXI GCAGC 1 cut(s) 3
BshFI GGCC 3 cut(s) 83, 99, 422
BshNI GGYRCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 286
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 3 cut(s) 83, 99, 422
BsoBI CYCGRG 1 cut(s) 286
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 2 cut(s) 225, 228
BspANI GGCC 3 cut(s) 83, 99, 422
BspLI GGNNCC 2 cut(s) 58, 223
BspMAI CTGCAG 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 419
BsrI ACTGG 2 cut(s) 81, 185
BssMI GATC 1 cut(s) 207
BssNAI GTATAC 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 244, 262
Bst6I CTCTTC 1 cut(s) 300
BstF5I GGATG 1 cut(s) 423
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 188
BstSFI CTRYAG 2 cut(s) 17, 101
BstV1I GCAGC 1 cut(s) 3
BstV2I GAAGAC 1 cut(s) 12
BstZ17I GTATAC 1 cut(s) 235
BsuRI GGCC 3 cut(s) 83, 99, 422
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 109
CviAII CATG 2 cut(s) 185, 340
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 286
FaeI CATG 2 cut(s) 188, 343
FaiI YATR 7 cut(s) 186, 206, 235, 280, 341, 353, 355
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 350
FatI CATG 2 cut(s) 184, 339
FauNDI CATATG 1 cut(s) 353
FblI GTMKAC 2 cut(s) 50, 234
Fnu4HI GCNGC 3 cut(s) 17, 225, 228
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 17, 225, 228
GluI GCNGC 3 cut(s) 17, 225, 228
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 3 cut(s) 83, 99, 422
Hin1II CATG 2 cut(s) 188, 343
HincII GTYRAC 2 cut(s) 51, 265
HindII GTYRAC 2 cut(s) 51, 265
HinfI GANTC 1 cut(s) 23
HphI GGTGA 3 cut(s) 262, 376, 423
Hpy166II GTNNAC 3 cut(s) 51, 235, 265
Hpy188I TCNGA 3 cut(s) 111, 166, 191
Hpy188III TCNNGA 2 cut(s) 152, 295
Hpy8I GTNNAC 3 cut(s) 51, 235, 265
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 244, 262
HpyCH4V TGCA 2 cut(s) 19, 138
Hsp92II CATG 2 cut(s) 188, 343
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 191, 221
LpnPI CCDG 6 cut(s) 5, 39, 62, 89, 165, 166
Lsp1109I GCAGC 1 cut(s) 3
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 3 cut(s) 17, 121, 317
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 169, 199
MnlI CCTC 4 cut(s) 73, 282, 301, 433
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 118
NdeI CATATG 1 cut(s) 353
NdeII GATC 1 cut(s) 207
NlaIII CATG 2 cut(s) 188, 343
NlaIV GGNNCC 2 cut(s) 58, 223
NspI RCATGY 1 cut(s) 188
PaeR7I CTCGAG 1 cut(s) 286
PceI AGGCCT 1 cut(s) 83
PctI GAATGC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 3 cut(s) 18, 226, 229
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 58, 223
PspXI VCTCGAGB 1 cut(s) 286
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 356
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 3 cut(s) 17, 225, 228
Sau3AI GATC 1 cut(s) 207
SchI GAGTC 1 cut(s) 32
SetI ASST 9 cut(s) 18, 58, 67, 108, 196, 312, 351, 372, 447
SfcI CTRYAG 2 cut(s) 17, 101
Sfr274I CTCGAG 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 286, 450
SmoI CTYRAG 2 cut(s) 286, 450
Sse9I AATT 1 cut(s) 93
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 2 cut(s) 225, 228
StuI AGGCCT 1 cut(s) 83
TaaI ACNGT 2 cut(s) 244, 262
TaqI TCGA 3 cut(s) 50, 210, 287
TasI AATT 1 cut(s) 93
TauI GCSGC 2 cut(s) 227, 230
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 140
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 3 cut(s) 87, 133, 267
TspRI CASTG 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 33
XceI RCATGY 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 286
XmiI GTMKAC 2 cut(s) 50, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.