Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Reverse (-)

19662194 .. 19663301

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCCCCTAAGATTCCAACCTTAGATTTCTCAAGAGAAGATTTGAAACCAGGCACAAAGTATTGGGAATCAACAAGAGAAAACATAAGACAAGCACTTGAAGAATATGGATGTTTCATCATAGATCTTAAAGACAAGACTCCTTTAGATCTTCTTGATCGAGTCTTTGGTTCTTTGGTCGACTTGTTTGATCTTCCAACACAGACCAAAATGAAGAACAAATACGATAAGCCCTTAAATGGCTACGTTGGTCAGATTCCAGCTCTTCCTCTTCATGAAAGTCTTGGCATTGATAATGCCACTTCGTTAGAAGCAACCAGAAGCTTCACCGGTTTGATGTGGCCACAAGGAAATGAACATTTTAGTGAATGTTTGTATAAGTATGCGGAGTTTGCAGCCGAGCTTGATCAAATGGTGACTCGGATGGTTTTCCAAAGCTATAATGTCGAGAAATACTACGATCCATATATCGAATCAACCACTTACCTTCTCCGTGTGCTGAAGAATCGTGCACCGAACAACGAAAACCCTACTTTAGGATTTGTTACACACACAGACAAGAGCTTCACAACAATACTTCACCAAGATCAAGTCAATGGGCTAGAAATGGAAACTAGAGAAGGAGAGCGAATCAATATCAATCTATCATCACCTTCACTCTTCATGGTCGTCGCAGGCGATGCATTGATGGCATGGAGCAACGATAGGGTTTGGTCTCCACGACACCAAGTTCTTGTGAGCGGTGAAACAGACAGATACTCTCTTGGAATGTTTGCATTCAACAATGGAACTCTTCAAGTACCAGAAGAGCTTATTGATCATCAACATCCTCTCATGTATAAGCCATTTGATCATCTTGGTCTTCTTCGATTCTACCGTACCGACACGGGTTACAAATCAGAGTGCCCTATCAAAGCTTATTGCGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

310

Amino Acids

35.7

Weight (kDa)

5.24

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	5 - 84	2.3e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 258	7e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	3 cut(s)	386, 741, 924
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	801, 880
AfiI	CCNNNNNNNGG	2 cut(s)	239, 536
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	46, 101, 781, 797
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	7 cut(s)	263, 324, 403, 438, 564, 811, 917
AluI	AGCT	7 cut(s)	263, 324, 403, 438, 564, 811, 917
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	720
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	1 cut(s)	341
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	1 cut(s)	395
AsiGI	ACCGGT	1 cut(s)	329
AsuHPI	GGTGA	5 cut(s)	319, 427, 572, 642, 755
BaeGI	GKGCMC	2 cut(s)	514, 908
BalI	TGGCCA	1 cut(s)	343
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	1 cut(s)	854
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	418, 682
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	3 cut(s)	406, 817, 850
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	2 cut(s)	602, 615
BglII	AGATCT	2 cut(s)	124, 148
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	720
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 536
Bse118I	RCCGGY	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	116, 429, 826
BseLI	CCNNNNNNNGG	2 cut(s)	239, 536
BseSI	GKGCMC	2 cut(s)	514, 908
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	239, 536
BsmAI	GTCTC	1 cut(s)	720
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	720
Bsp1286I	GDGCHC	2 cut(s)	514, 908
Bsp143I	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
BspACI	CCGC	3 cut(s)	386, 741, 924
BspANI	GGCC	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	274
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	2 cut(s)	270, 801
BspTNI	GGTCTC	1 cut(s)	720
BsrBI	CCGCTC	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	878
Bst6I	CTCTTC	5 cut(s)	270, 276, 665, 798, 801
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	2 cut(s)	9, 22
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	3 cut(s)	116, 429, 826
BstKTI	GATC	9 cut(s)	127, 151, 160, 193, 409, 463, 589, 820, 853
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 680, 689
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	2 cut(s)	514, 908
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	854
BstX2I	RGATCY	2 cut(s)	124, 148
BstYI	RGATCY	2 cut(s)	124, 148
BsuRI	GGCC	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	3 cut(s)	116, 429, 826
Cac8I	GCNNGC	1 cut(s)	676
CciI	TCATGA	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	800, 879
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	4 cut(s)	275, 664, 693, 835
CviQI	GTAC	2 cut(s)	800, 879
DdeI	CTNAG	2 cut(s)	9, 22
DpnI	GATC	9 cut(s)	126, 150, 159, 192, 408, 462, 588, 819, 852
DpnII	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	5 cut(s)	270, 276, 665, 798, 801
EarI	CTCTTC	5 cut(s)	270, 276, 665, 798, 801
Eco31I	GGTCTC	1 cut(s)	720
Eco57I	CTGAAG	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	685
FaeI	CATG	4 cut(s)	278, 667, 696, 838
FatI	CATG	4 cut(s)	274, 663, 692, 834
FbaI	TGATCA	3 cut(s)	406, 817, 850
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	3 cut(s)	123, 436, 813
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	602, 615
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	4 cut(s)	278, 667, 696, 838
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	2 cut(s)	322, 915
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	5 cut(s)	319, 427, 572, 642, 755
Hpy166II	GTNNAC	2 cut(s)	181, 512
Hpy188I	TCNGA	3 cut(s)	255, 423, 901
Hpy188III	TCNNGA	4 cut(s)	33, 155, 275, 448
Hpy8I	GTNNAC	2 cut(s)	181, 512
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	3 cut(s)	497, 614, 663
HpyCH4III	ACNGT	1 cut(s)	878
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	395, 512, 683, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 680, 689
HpyF3I	CTNAG	2 cut(s)	9, 22
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	278, 667, 696, 838
Ksp22I	TGATCA	3 cut(s)	406, 817, 850
Kzo9I	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
LguI	GCTCTTC	2 cut(s)	270, 801
LmnI	GCTCC	1 cut(s)	696
LpnPI	CCDG	7 cut(s)	36, 63, 273, 331, 343, 660, 816
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	602, 615
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	415, 544, 890
MalI	GATC	9 cut(s)	126, 150, 159, 192, 408, 462, 588, 819, 852
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
MflI	RGATCY	2 cut(s)	124, 148
MhlI	GDGCHC	2 cut(s)	514, 908
MlsI	TGGCCA	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	343
MlyI	GAGTC	3 cut(s)	133, 171, 412
MmeI	TCCRAC	2 cut(s)	41, 221
MnlI	CCTC	2 cut(s)	279, 840
Mox20I	TGGCCA	1 cut(s)	343
Mph1103I	ATGCAT	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	343
MseI	TTAA	2 cut(s)	129, 236
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	343
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	392, 680, 689
NdeII	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
NlaIII	CATG	4 cut(s)	278, 667, 696, 838
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	415
NsiI	ATGCAT	1 cut(s)	685
PagI	TCATGA	1 cut(s)	274
PciSI	GCTCTTC	2 cut(s)	270, 801
PcsI	WCGNNNNNNNCGW	2 cut(s)	675, 874
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	7 cut(s)	13, 68, 256, 473, 505, 630, 870
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	133, 170, 412
PpsI	GAGTC	3 cut(s)	133, 170, 412
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	124, 148
RsaI	GTAC	2 cut(s)	801, 880
RsaNI	GTAC	2 cut(s)	800, 879
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	179
SapI	GCTCTTC	2 cut(s)	270, 801
SaqAI	TTAA	2 cut(s)	129, 236
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	9 cut(s)	124, 148, 157, 190, 406, 460, 586, 817, 850
SchI	GAGTC	3 cut(s)	133, 171, 412
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	514, 908
SfaNI	GCATC	1 cut(s)	670
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	3 cut(s)	386, 741, 924
SspMI	CTAG	2 cut(s)	602, 615
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	878
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	160, 180, 447, 471, 868
TfiI	GAWTC	7 cut(s)	13, 68, 256, 473, 505, 630, 870
Tru1I	TTAA	2 cut(s)	129, 236
Tru9I	TTAA	2 cut(s)	129, 236
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	6 cut(s)	106, 227, 263, 291, 369, 652
TspGWI	ACGGA	1 cut(s)	482
VneI	GTGCAC	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	602, 615
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.