Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Reverse (-)

23848650 .. 23850210

Gene Structure 1561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTCTGATCATCATCAAGTGCCCCTAAAGCTTCCGGTCCTAGATTTCTCAAACAAGGAATCTCTGAATCCTGGCACCAACTCATGGCTCTCTGCACGCAAACATGTTCAAGGAGCACTCGAAGAGTTTGGCTGCTTTGTAGTTTTGTACGACGGAATCTCTCCGGACTTCCGCAACACTTTGTTAGCTACTATGCAAGAGTTGTTTGATCTCCCTACTAAAACCAAAATGACAAACAAATATGAGGCTAAACCCTTAAATGGGTATGTTGGGCAAATTCCCAAACTCCCTCTCCATGAAAGCATGGGCATCGATAATGCCACTTCTCTGGAGGAAACTCAGAGATTCACTGAGCTCATGTGGCCAGGTGGAAATGATAACTTTTGTGAAAGTGTATATTCGTTTGCCAAAGTAGCAGAAGAGCTGGATAAAATGGTGACTAGAATGATATTTGAGAGCTATGGCGTGGAGAAGTGTTATGACTCTTATGTTGGGTCCATCACTTATCTTCTTCGACTGTTGAAGAACAAATTGCCTCAAGAAAACCAACCTAATCTTGGCTTTGTCCCTCACACTGACAAGAGCTTCACAACCATACTTTACCAGAACAATCAGGTTCATGCTTTGGAGATTGAAACAAGAAACCATGAATGGTTTAAGGTTGAGTTTCCACCTTCATCCTTTATAGTCATGGCGGGTGATGCACTAATGGCATGGAGTAATGACAGAATATTATCTCCGAACCACCGAGTTGTTATGAGCACTGGGCATGAAACGGAAGCAAGATACTCTATGGCACAATTTGCATTTAGCAATGGCGAGATCCGAGTGCCTGATGAGCTTGTTGACGACCAACACCCCTTACGGTACAAGCCTTTCGATCATGTCGGGTTACTACGTTTCTTTCGTACTGCTGAAGACAACTCGAACTCTGCTATAAAAGCCTATTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

321

Amino Acids

36.48

Weight (kDa)

5.48

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 92	2.3e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	177 - 270	1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	175, 698
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	939
AfaI	GTAC	3 cut(s)	152, 872, 913
AfiI	CCNNNNNNNGG	4 cut(s)	87, 263, 264, 560
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	113, 526, 638
AjnI	CCWGG	2 cut(s)	73, 367
AluBI	AGCT	7 cut(s)	34, 191, 358, 427, 462, 588, 844
AluI	AGCT	7 cut(s)	34, 191, 358, 427, 462, 588, 844
Alw21I	GWGCWC	3 cut(s)	121, 360, 767
AlwI	GGATC	1 cut(s)	820
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	40, 498
AsuHPI	GGTGA	2 cut(s)	451, 713
AvaII	GGWCC	2 cut(s)	40, 498
BaeGI	GKGCMC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	927
Bbv12I	GWGCWC	3 cut(s)	121, 360, 767
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	1 cut(s)	509
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	75, 369
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	2 cut(s)	44, 444
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	75, 369
Bme18I	GGWCC	2 cut(s)	40, 498
BmgT120I	GGNCC	2 cut(s)	40, 498
BmiI	GGNNCC	2 cut(s)	79, 499
BmrFI	CCNGG	2 cut(s)	75, 369
BmrI	ACTGGG	1 cut(s)	777
BmsI	GCATC	2 cut(s)	321, 694
BmuI	ACTGGG	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	927
BpmI	CTGGAG	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	37, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 263, 264, 560
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	1 cut(s)	823
Bse8I	GATNNNNATC	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	75, 369
BseCI	ATCGAT	1 cut(s)	315
BseGI	GGATG	1 cut(s)	680
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	87, 263, 264, 560
BseMI	GCAATG	1 cut(s)	823
BseMII	CTCAG	2 cut(s)	345, 356
BseNI	ACTGG	1 cut(s)	772
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	3 cut(s)	121, 360, 767
BsiSI	CCGG	2 cut(s)	38, 167
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	4 cut(s)	87, 263, 264, 560
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	4 cut(s)	27, 121, 360, 767
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	10, 211, 825, 883
BspACI	CCGC	2 cut(s)	175, 698
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	346, 355
BspDI	ATCGAT	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	79, 499
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	823
BsrI	ACTGG	1 cut(s)	772
BssMI	GATC	4 cut(s)	10, 211, 825, 883
Bst2UI	CCWGG	2 cut(s)	75, 369
Bst4CI	ACNGT	2 cut(s)	522, 870
Bst6I	CTCTTC	2 cut(s)	120, 417
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	342, 354
BstF5I	GGATG	1 cut(s)	680
BstKTI	GATC	4 cut(s)	13, 214, 828, 886
BstMBI	GATC	4 cut(s)	10, 211, 825, 883
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
BstNI	CCWGG	2 cut(s)	75, 369
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	73, 367
BstSLI	GKGCMC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	1 cut(s)	825
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	825
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	367
BsuTUI	ATCGAT	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	3 cut(s)	351, 576, 765
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	40, 498
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	151, 871, 912
CviQI	GTAC	3 cut(s)	151, 871, 912
DdeI	CTNAG	2 cut(s)	342, 354
DpnI	GATC	4 cut(s)	12, 213, 827, 885
DpnII	GATC	4 cut(s)	10, 211, 825, 883
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	120, 417
EarI	CTCTTC	2 cut(s)	120, 417
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	40, 498
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	939
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	73, 367
EcoT38I	GRGCYC	1 cut(s)	360
FaqI	GGGAC	1 cut(s)	554
FauI	CCCGC	1 cut(s)	691
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	44, 444
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	2 cut(s)	38, 167
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	5 cut(s)	62, 70, 159, 348, 485
HpaII	CCGG	2 cut(s)	38, 167
HphI	GGTGA	2 cut(s)	451, 713
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188I	TCNGA	5 cut(s)	10, 69, 345, 744, 830
Hpy188III	TCNNGA	3 cut(s)	167, 332, 542
Hpy8I	GTNNAC	1 cut(s)	850
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	687
HpyCH4III	ACNGT	2 cut(s)	522, 870
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	4 cut(s)	98, 199, 707, 809
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
HpyF3I	CTNAG	2 cut(s)	342, 354
HpySE526I	ACGT	1 cut(s)	901
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 211, 825, 883
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	321, 694
MaeI	CTAG	2 cut(s)	44, 444
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	2 cut(s)	439, 894
MalI	GATC	4 cut(s)	12, 213, 827, 885
MboI	GATC	4 cut(s)	10, 211, 825, 883
MboII	GAAGA	6 cut(s)	137, 434, 503, 506, 538, 932
MflI	RGATCY	1 cut(s)	825
MhlI	GDGCHC	4 cut(s)	27, 121, 360, 767
MlsI	TGGCCA	1 cut(s)	367
MluCI	AATT	3 cut(s)	279, 533, 803
MluNI	TGGCCA	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	5 cut(s)	241, 303, 328, 549, 582
Mox20I	TGGCCA	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	367
MseI	TTAA	2 cut(s)	260, 660
Msp20I	TGGCCA	1 cut(s)	367
MspI	CCGG	2 cut(s)	38, 167
MspR9I	CCNGG	2 cut(s)	75, 369
MvaI	CCWGG	2 cut(s)	75, 369
MwoI	GCNNNNNNNGC	8 cut(s)	31, 364, 416, 704, 713, 806, 841, 944
NdeII	GATC	4 cut(s)	10, 211, 825, 883
NlaIV	GGNNCC	2 cut(s)	79, 499
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	110
PciI	ACATGT	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	907
PfeI	GAWTC	4 cut(s)	62, 70, 159, 348
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PscI	ACATGT	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	73, 367
PspGI	CCWGG	2 cut(s)	73, 367
PspN4I	GGNNCC	2 cut(s)	79, 499
PspPI	GGNCC	2 cut(s)	40, 498
PsuI	RGATCY	1 cut(s)	825
RsaI	GTAC	3 cut(s)	152, 872, 913
RsaNI	GTAC	3 cut(s)	151, 871, 912
SacI	GAGCTC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	260, 660
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	4 cut(s)	10, 211, 825, 883
Sau96I	GGNCC	2 cut(s)	40, 498
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	75, 369
SduI	GDGCHC	4 cut(s)	27, 121, 360, 767
SfaNI	GCATC	2 cut(s)	321, 694
SinI	GGWCC	2 cut(s)	40, 498
SmlI	CTYRAG	1 cut(s)	540
SmoI	CTYRAG	1 cut(s)	540
Sse9I	AATT	3 cut(s)	279, 533, 803
SsiI	CCGC	2 cut(s)	175, 698
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	2 cut(s)	44, 444
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	73, 367
TaaI	ACNGT	2 cut(s)	522, 870
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	5 cut(s)	123, 315, 517, 882, 929
TasI	AATT	3 cut(s)	279, 533, 803
TfiI	GAWTC	4 cut(s)	62, 70, 159, 348
Tru1I	TTAA	2 cut(s)	260, 660
Tru9I	TTAA	2 cut(s)	260, 660
TscAI	CASTG	3 cut(s)	358, 583, 772
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	315, 611, 666, 669, 789
TspGWI	ACGGA	2 cut(s)	171, 794
TspRI	CASTG	3 cut(s)	358, 583, 772
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	2 cut(s)	40, 498
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XspI	CTAG	2 cut(s)	44, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.