Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014956

Physical Location & Seq

Genomic Coordinates Forward (+)

42191813 .. 42193223

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0339500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAAGGAATTGCGAAAGGCTTGGTCTACCTGCATGAGTTTAGCTCCAAAAAGTATGTCCATGGAGACTTGAAGCCGAGTAACATGCTTCTTGGACATAACATGGAGCCACACATTTCTGATTTTGGACTCGGACGCCTTGCTAATATAGCCGGAGGTACCCCAACACTGGAATCCAACCGAATGGCCACCATAGACAAACCACAACAAAGGCACCAAAAGAGCGCATCGATTGAATCTGCTATAGTTTGTTCATCTAGTAATTTGGGATCTTGTTATAAAGCTCCAGAAGCTCTGAAGGTGGTGAAACCATCACAGAAATGGGATGTCTATTCCTACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

9.3

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 114	1.1e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 48	3.8e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52790
fragaria_vesca	FvH4_6g30751 FvH4_6g30751
malus_domestica	MD17G1200700.v1.1
prunus_persica	Prupe.3G076300_v2.0.a1 Prupe.4G141200_v2.0.a1
pyrus_communis	pycom17g20420 pycom17g20470
rosa_chinensis	RchiOBHm_Chr2g0137171
rosa_laevigata	RLG00000019630
rosa_multiflora	Rmu_sc0000894.1_g000049
rosa_roxburghii	Rroxscaffold_2G00107420
rosa_rugosa	Rorug02G0339500
rosa_samantha	Rh2CG375200 Rh2DG410700
rosa_wichuraiana	Rw2G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	39
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	158, 213
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	73, 236
AluBI	AGCT	3 cut(s)	45, 284, 293
AluI	AGCT	3 cut(s)	45, 284, 293
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	158, 213
BccI	CCATC	1 cut(s)	319
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	108, 160, 215
BmsI	GCATC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	2 cut(s)	158, 213
BshVI	ATCGAT	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	108, 160, 215
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	2 cut(s)	158, 213
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	269
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 290
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	35, 62, 85, 103
CviJI	RGCY	8 cut(s)	21, 45, 76, 109, 152, 188, 284, 293
CviKI_1	RGCY	8 cut(s)	21, 45, 76, 109, 152, 188, 284, 293
CviQI	GTAC	1 cut(s)	159
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	4 cut(s)	38, 65, 88, 106
FatI	CATG	4 cut(s)	34, 61, 84, 102
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	338
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	38, 65, 88, 106
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	3 cut(s)	129, 173, 236
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	121, 134, 297
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 290
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	38, 65, 88, 106
HspAI	GCGC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	3 cut(s)	50, 106, 289
LpnPI	CCDG	4 cut(s)	44, 155, 166, 300
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MflI	RGATCY	1 cut(s)	269
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	9, 262
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	319
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	149, 290
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	4 cut(s)	38, 65, 88, 106
NlaIV	GGNNCC	3 cut(s)	108, 160, 215
NmeAIII	GCCGAG	1 cut(s)	102
NspI	RCATGY	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	173, 236
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	108, 160, 215
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	123
SetI	ASST	6 cut(s)	33, 47, 160, 286, 295, 303
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	9, 262
SspMI	CTAG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	9, 262
TfiI	GAWTC	2 cut(s)	173, 236
TscAI	CASTG	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	17, 243
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.